rna249, rna249 (mRNA) Nannochloropsis gaditana

Overview
Namerna249
Unique Namerna249
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1951
Alignment locationCM002455.1:631357..632315 +

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Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100210g9.8074.mrna
Orig protein idgnl|cribi|Naga_100210g9.8074
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:631357..632315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100210g9gene238Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna249rna249-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30426.1cds249Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna249 ID=rna249|Name=rna249|organism=Nannochloropsis gaditana|type=mRNA|length=1951bp
TGCACAGGAAGAAAGAAAGAGGCTGCTTGAACGGATTTCGAAGCGTGCAT
CATGGACAGCCGGAAAAAGCTTTTCAAAAAGGTGTTTGATGGGGATTCCT
GCCGACGTCGTCGCGAAGAGCAGCAGGTTCAGATCCGGAAGCAAAAACGC
GAAGACTCATTGTCACAGCGCAGGCGCATGGACAATGATTCTCAATCGAC
TGTGCCTGCAGCAACGAATTACCCTGCTGCGGGGTCATTCGGCACAAGTG
TCGGCTTGGCGGCGGGCGGCGCGAACTTGGGGGGACCGCAGGTGGAGGAT
TTGCCTCGCTTTGCCTTGGACATGCGCTCGGGCGATGTCGCCCGCGAAGT
TGAAGCCACACGGGGTGTGCGCAAGCTCCTGTCTGTCGAACGTAAACCTC
CGGTAGAGGAAGTCCTGGCGCAGAATATCCTCCCCTTGTTGGTCGGGCTG
CTGGACAGGGACGGGGCGCCGACGCAGCTTCAATTCGAGGCGGCGTGGGC
CCTGACGAACATCGCCTCCACGTCCTTTACTCGGGCGCTCGTCGTACACG
GCGCCATCCCCCCTCTGACTCGCCTCCTCCTCTCCCCATCCGCGGACGTG
CGGGAGCAGTGTGCGTGGGCCTTGGGCAACGTGAGCGGGGACTGCCCTGA
GCTCCGTGACATGGTTCTGCAGCACGGGGCCCTGCGCCCTCTCCTGCAGA
ACGTCCTGGCGCCTGCGTCCGAGTCCATGCTGCGCAACTGCATTTGGAGC
CTGTCCAACCTGTGTCGGGGCAAGCCGCAGCCTCACGTGGACTTGTTGCG
ACCCGCGCTGCCTGTGCTCGCCCAGGTCCTGGCCTCCTCCTCGGACCCTG
AGTGCCTGCAGGATACCGCCTGGGCCCTCTCCTACATATCAGACGGCGAC
GGTGCGCGAATCCAGGCCGTTCTTGACGCGGACGTGGCAAGCGACCTGGT
CAAGCATTTGACGCACCCGCTCCCGAACGTGGTGACGCCCGTCGTGCGGG
CACTGGGCAACCTCGTCTCCGGCGACGACGAGCACACGCAGGCCGTCATC
GATGCAGGAGCTCTGACCTGCATGCCCTCTCTTTTGAGAAATTGCAAGAA
GAACATTCGGAAGGAGACGTGTTGGCTGCTGAGTAACATCGCCGCGGGGA
ACAGACAGCAGGTGCACGCTCTGGCAACCACGCAGGGTTTAGTCAAAGCA
GTTCTGACGCAGATGAGCCAAGCCGAATGGGAGGTCAGGAAAGAAGCCGC
CTGGGTTGTCTCCAACGTGGCCACCGGGGGGAGCGGACAGCACGTGCACA
TGCTGGTCGAGCTGGGCGTCCTCAAACCCTTGTCCGACCTGTTGGATGCG
GCCGATGTGAAGGTCATCGAAGTGGCGTTGGACGCGCTGGAGGCGATCCT
GAAAGTGTGGAAGACAGGAGTCCCCCTGGCGCATGGCGAGTGCGATTACA
TGGTGCTTCTTCAAGAGGCAGACCTGCATGAACGTCTGGAGAAGTTGCAG
GAGCATGCAAGCGAGAAAATCTATAGGCGAGCTGTGGACATCATTGAGAA
CTATTTGGGTGTGGAGGAGGAAGAGGAATTGGGGGACAAATTGCAGAACG
AGTTCGGTCAAGGGATGTACGGCTTCCAGTCCGCGGCACAAGTCGGAGCA
TCGAACAAAGGGTTTGATTTCAGCAGCTTTGGACATTAGGAAGAGGTTGC
TGGGTGGTTGCAAGAAAGCATAATAGATGAACGTCGTCGGGATCGAAATT
GACCAGGTTACATAGTATGATGCCGAATGCGGGTCTGTGTGAAAATATGG
CATAAAGTAGACCCACAAACTGAAAGTTTACGAAGATAAATGAAAGCGAA
AAGTTTTAAATTGCCGTGAAGATTGGCATTATGATTGGAAGCAAGCTAAA
GCACTATGCACGTGTGGATAATAAGCACAAAGAACATATACACACATAGA
T
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protein sequence of rna249

>rna249-protein ID=rna249-protein|Name=rna249|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRL
IIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSC
TVLRARVARAVDGLDMSLYEQSVRLRRAFLERHGLGQGK
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mRNA from alignment at CM002455.1:631357..632315+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna249 ID=rna249|Name=rna249|organism=Nannochloropsis gaditana|type=mRNA|length=959bp|location=Sequence derived from alignment at CM002455.1:631357..632315+ (Nannochloropsis gaditana)
CGGACGGGGCGAgggctcctccttcgagCTCAGAGCGCTTGAGGGCGTGC
GGTACAGCTAGCCGACTGCGATCTCGTTCGAGAACCAACTCAAAAACCAA
TTCACATCGTGCATCTACACTAGGTACAATTCAACTATGGCTTCCACCGA
CATGTCCATCCAGCATGGCGAAATTGTCTTCTTGCACGAGCTGGTCCGAT
CTCCTGAACCCTACCGGCGGACACGAGAACGATCAGTACGGGTGACCGGG
CGTTGTGTTCACGTCGACACTCATCAAAAGAGACTAATCATTCAAGACCG
ATCTAACCGCCTGACTGTTAATATTGAACTGATAGCGGATCAACTATTTG
CAATAGATGGCCTGTATCAATTTATCGGGGAGCtccgggaagagaggggg
gaggttgtgaTGGGAGGTACTACTGATGATAGCTGCACAGTTTTACGGGC
TCGCGTAGCTCGAGCAGTCGATGGTCTAGATATGTCATTGTATGAGCAGT
CCGTGCGCCTGCGCCGGGCATTCTTAGAAAGGCACGGGTTGGGCCAAGGC
AAATAGGTGTATGAGGGGAGAGGCTGCATCGAAGAGCAAAGACTAAAGAA
GGCTTGAAACAGGAAATATCGATCCACTGTGCAAAGTCAAGTCAATGTAC
AGAGTGTTACGTTTCTCAAGGATACAATGCTTCGAGATCGTATCCTCATG
CGCTGATTGCACGTGTTGCATCATCTTGTAGCTTGATTTCGATTTCCGTC
ACCACAACATAGGGAAACACACCAAaccctgccctgcctcccacaCTGCC
ACGCCTGCCAAACCCAGCTCCCGTGATAAGGCGAATCTTCTTTTAaagaa
ggcgggggtggggtaCGTGGCTCGGACCTCctcgccagcctcctcgccat
gTGAGGCCGAGTAGACAAACACGTGCTCCTGAGTATCTTCGTCCCACCAC
ACGCGCCGC
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Coding sequence (CDS) from alignment at CM002455.1:631357..632315+

>rna249 ID=rna249|Name=rna249|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at CM002455.1:631357..632315+ (Nannochloropsis gaditana)
ATGGCTTCCACCGACATGTCCATCCAGCATGGCGAAATTGTCTTCTTGCA
CGAGCTGGTCCGATCTCCTGAACCCTACCGGCGGACACGAGAACGATCAG
TACGGGTGACCGGGCGTTGTGTTCACGTCGACACTCATCAAAAGAGACTA
ATCATTCAAGACCGATCTAACCGCCTGACTGTTAATATTGAACTGATAGC
GGATCAACTATTTGCAATAGATGGCCTGTATCAATTTATCGGGGAGCtcc
gggaagagaggggggaggttgtgaTGGGAGGTACTACTGATGATAGCTGC
ACAGTTTTACGGGCTCGCGTAGCTCGAGCAGTCGATGGTCTAGATATGTC
ATTGTATGAGCAGTCCGTGCGCCTGCGCCGGGCATTCTTAGAAAGGCACG
GGTTGGGCCAAGGCAAATAG
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Synonyms
Publications