EWM30426.1, cds249 (CDS) Nannochloropsis gaditana

Overview
NameEWM30426.1
Unique Namecds249
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:631493..631912 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30426.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100210g9.8074.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:631493..631912 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003697single-stranded DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0070188obsolete Stn1-Ten1 complex
Vocabulary: INTERPRO
TermDefinition
IPR029146Ten1_animal_plant
Homology
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|585113087|gb|EWM30426.1| (uncharacterized protein Naga_100210g9 [Nannochloropsis gaditana])

HSP 1 Score: 280.796 bits (717), Expect = 8.567e-96
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query:    1 MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLERHGLGQGK 139
            MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLERHGLGQGK
Sbjct:    1 MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLERHGLGQGK 139          
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|1009113782|ref|XP_015873333.1| (PREDICTED: uncharacterized protein LOC107410420 [Ziziphus jujuba] >gi|1009113784|ref|XP_015873334.1| PREDICTED: uncharacterized protein LOC107410420 [Ziziphus jujuba])

HSP 1 Score: 72.4034 bits (176), Expect = 9.928e-14
Identity = 49/129 (37.98%), Postives = 70/129 (54.26%), Query Frame = 0
Query:    1 MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAF 129
            MAS+  +I+ G +V L +L  S + Y  ++  S+RVTG+           II D S  L +N + I D  F +  +YQFIGEL              D+  VL+ARV R VDG+D++LY QS+RL + F
Sbjct:    1 MASS--AIKSGALVALQDLHPSSQYY--SQGTSLRVTGKLQEYSVETAIAIIADGSANLKINTQHIRDLNFRVGSIYQFIGELL----------IHTDNEAVLQARVGRNVDGMDLNLYHQSLRLLKQF 115          
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|1173941392|gb|OQR90567.1| (hypothetical protein THRCLA_22535 [Thraustotheca clavata])

HSP 1 Score: 72.0182 bits (175), Expect = 1.064e-13
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = 0
Query:    8 IQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLE 131
            +  GEIV + E++R        R+RSVRVTGR    D  Q+   I  +++ + V  EL+++    +  LYQFIGE  E+ GE+            L+AR+ R VDGLD+ ++  ++++RR F++
Sbjct:    2 LAAGEIVQIDEILRDN-----MRDRSVRVTGRLDSFDASQRTASISFQNSSMKVTTELLSNVELNLGSLYQFIGETYEQNGEL-----------RLKARIGRNVDGLDIQMFLDALKIRREFIK 109          
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|470392865|ref|XP_004334810.1| (Hypothetical protein ACA1_093430 [Acanthamoeba castellanii str. Neff] >gi|440791559|gb|ELR12797.1| Hypothetical protein ACA1_093430 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 71.633 bits (174), Expect = 2.839e-13
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 0
Query:    6 MSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQD---RSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAF 129
            + +Q G+I  + E++ +    +    +SVRV G+ V  D    R++++    R++RLTV+  L+     A   L+Q IGELR  R E   GG       VL ARVAR VDGLD+ LY++++RL+R F
Sbjct:   12 VPLQFGQIKHIEEILAT----KDLNGQSVRVLGKVVEFDIPSNRVVLESPHGRTHRLTVDTRLLEAMPLATHSLFQVIGELR--RQEDQPGGY------VLEARVARNVDGLDIGLYDEALRLKRQF 126          
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|1150731736|ref|XP_020276638.1| (CST complex subunit TEN1 [Asparagus officinalis])

HSP 1 Score: 71.2478 bits (173), Expect = 3.300e-13
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 0
Query:    1 MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLE 131
            MA +D  I+ G++V LHEL  S   ++     S+RVTG+           II D    L +N + + +    ID +YQFIGEL+ +           ++  +L+ARV R VDG+D++LY Q+++LRR F E
Sbjct:    1 MAPSD--IKPGKLVALHELEASSPFFKHGS--SLRVTGKLQAHSVETGIAIITDGGVSLKINTKHLTNLSLRIDSIYQFIGELQIQ----------SENDAILQARVGRNVDGIDLNLYYQTMKLRRKFEE 117          
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|743883021|ref|XP_011036913.1| (PREDICTED: uncharacterized protein LOC105134261 isoform X3 [Populus euphratica])

HSP 1 Score: 70.8626 bits (172), Expect = 3.684e-13
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 0
Query:    6 MSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLERH 133
            M+I+HGE+V L EL  S  P+ + +  SVRVTG+           ++ D +  L ++ + + D  F +  +YQFIGEL  +           DS  +L+ARV R  DG+D+SLY QS++L R     H
Sbjct:    1 MAIKHGELVTLEELNPS-SPFFK-QGASVRVTGKLQQYTVETAIAVVADGNATLKIDTQHLRDISFRMGSVYQFIGELLIQ----------PDSEAILQARVGRIADGIDLSLYPQSLQLLRQVQADH 116          
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|1141982164|gb|ONK63387.1| (uncharacterized protein A4U43_C07F14600 [Asparagus officinalis])

HSP 1 Score: 70.8626 bits (172), Expect = 6.091e-13
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 0
Query:    1 MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLE 131
            MA +D  I+ G++V LHEL  S   ++     S+RVTG+           II D    L +N + + +    ID +YQFIGEL+ +           ++  +L+ARV R VDG+D++LY Q+++LRR F E
Sbjct:    1 MAPSD--IKPGKLVALHELEASSPFFKHGS--SLRVTGKLQAHSVETGIAIITDGGVSLKINTKHLTNLSLRIDSIYQFIGELQIQ----------SENDAILQARVGRNVDGIDLNLYYQTMKLRRKFEE 117          
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|1179530892|ref|XP_020686535.1| (CST complex subunit TEN1 [Dendrobium catenatum])

HSP 1 Score: 70.0922 bits (170), Expect = 7.548e-13
Identity = 48/129 (37.21%), Postives = 68/129 (52.71%), Query Frame = 0
Query:    1 MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAF 129
            MAS+   I+ G +V L EL  S   ++  +  S+RVTG+           II D    L ++ + + D  F I+ +YQFIGEL              D   VL+AR+ R VDG+D++LY QS+RLRR F
Sbjct:    1 MASS--IIKPGLLVALQELQPSSPFFKEGQ--SIRVTGKLQSYSVESAIAIIVDGGATLLIDTQHLRDINFRINSIYQFIGELL----------IPHDGQVVLKARIGRNVDGIDLNLYHQSIRLRRKF 115          
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|1021499872|ref|XP_016193216.1| (CST complex subunit TEN1 [Arachis ipaensis])

HSP 1 Score: 70.0922 bits (170), Expect = 8.245e-13
Identity = 49/130 (37.69%), Postives = 66/130 (50.77%), Query Frame = 0
Query:    6 MSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGEL--REERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLERH 133
            + I+ G +V L EL  S   +++    S+RVTG+            I D S+ L VN E + D  F +  +YQFIGEL  R E  E            VL+ARV R VDG+D++LY QS+ L R F   H
Sbjct:    4 IEIKSGALVTLQELNHSSPFFKQGA--SLRVTGKLQEYTLETALATIVDGSDFLKVNTEHLRDLTFKVGSIYQFIGELQIRSENNE-----------GVLQARVGRNVDGIDLNLYHQSLLLLRQFQANH 120          
BLAST of EWM30426.1 vs. NCBI_GenBank
Match: gi|1150134952|ref|XP_020211010.1| (CST complex subunit TEN1 [Cajanus cajan])

HSP 1 Score: 69.707 bits (169), Expect = 1.055e-12
Identity = 49/133 (36.84%), Postives = 70/133 (52.63%), Query Frame = 0
Query:    1 MASTDMSIQHGEIVFLHELVRSPEPYRRTRERSVRVTGRCVHVDTHQKRLIIQDRSNRLTVNIELIADQLFAIDGLYQFIGELREERGEVVMGGTTDDSCTVLRARVARAVDGLDMSLYEQSVRLRRAFLERH 133
            MAS  + I+ G +V L +L R   P+ + +  S+R+ G+     T     II D  + L VN E + D +F +  +YQFIGEL              D+  VL+ARV R VDG+D++LY QS+ L R F   H
Sbjct:    1 MAS--LEIKSGALVSLQDL-RPSSPFFK-QGASLRIIGKLQEYSTETGLAIIIDGDDILKVNTEHLRDLIFHVGSVYQFIGELL----------IQPDNEGVLQARVGRNVDGIDLNLYHQSLLLLRQFQANH 119          
The following BLAST results are available for this feature:
BLAST of EWM30426.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113087|gb|EWM30426.1|8.567e-96100.00uncharacterized protein Naga_100210g9 [Nannochloro... [more]
gi|1009113782|ref|XP_015873333.1|9.928e-1437.98PREDICTED: uncharacterized protein LOC107410420 [Z... [more]
gi|1173941392|gb|OQR90567.1|1.064e-1334.68hypothetical protein THRCLA_22535 [Thraustotheca c... [more]
gi|470392865|ref|XP_004334810.1|2.839e-1337.80Hypothetical protein ACA1_093430 [Acanthamoeba cas... [more]
gi|1150731736|ref|XP_020276638.1|3.300e-1335.88CST complex subunit TEN1 [Asparagus officinalis][more]
gi|743883021|ref|XP_011036913.1|3.684e-1335.94PREDICTED: uncharacterized protein LOC105134261 is... [more]
gi|1141982164|gb|ONK63387.1|6.091e-1335.88uncharacterized protein A4U43_C07F14600 [Asparagus... [more]
gi|1179530892|ref|XP_020686535.1|7.548e-1337.21CST complex subunit TEN1 [Dendrobium catenatum][more]
gi|1021499872|ref|XP_016193216.1|8.245e-1337.69CST complex subunit TEN1 [Arachis ipaensis][more]
gi|1150134952|ref|XP_020211010.1|1.055e-1236.84CST complex subunit TEN1 [Cajanus cajan][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna249rna249Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications