|
|
Properties
| Property Name | Value |
|---|
| Product | cytochrome b6-f complex iron-sulfur subunit |
| Orig transcript id | gnl|cribi|Naga_100004g129.9174.mrna |
| Orig protein id | gnl|cribi|Naga_100004g129.9174 |
| Gene | PETC |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:506190..509387 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2489 ID=rna2489|Name=rna2489|organism=Nannochloropsis gaditana|type=mRNA|length=2734bp
CATCCTCTAGCGCCCCGCCGCGTCGCTCATGTTCGTAAGCGCCTTACACG
CCATGTCCTAGCCTGCCTCGGCTCTTTGCTAGCCGAGCTCAGCAGGACGT
CGCATGACTGTCGCGTCGACTTGTCGGTTCATTTGTTTTTCCTCACCGGT
GCGCTTATTAACGATTAATGTCGCGATGATGCCGTTGCTGTCATGATCTG
ATAAGTGATGCGGAACCACGCAGGTCTTCGGTACTTTACGCGTCTTTTCA
GTGCCCAAGCAAAAGCTCTGAGTCGGAAAAAGTCACATGCTCAAGGAAGT
TAAAAAATGGAGTTGACCTTTGAATTATCTCTTTCCAGAATTCCTCCCCC
CCCCGACAAAAGATAGGAAAAGATGGACTTTTCGTCGTCCTTGAAAGCCG
CAAGCTGCCTGGTAAAGCGGCTTCGACAAGAAACCACGGGTTCAGAGCTG
TCGACCCTGCTGCCCGTCGCTCAACTGTTATCATCCAAACTTATAGCGAA
ACCAAATTTTGTTTTGACGGACGTGGACGAACCTCTGCGGATCTTAATGA
CTTTGGGACAGGAGGCACGGTGGGAATGCTTGTGCGTGGCATTACTGGTC
TTCAACGACGCCATAGCACACACGGCTCCTGCCCCTGCCGTCTCGCCAGT
GCTCCGCAATGCAGTTGAGACGGTGATCGCACTTCATTTGGAGCATGATG
AGCCCAGGGTGAGGCGCCTGGTCGCCAAGACGCTCGGTTTGCTCTGCACC
CTCCCATCCGTGGGGACGGACGCCTATACGCGCTTTGCTGGGCAATTGTG
GGCCAGTGTGGATGCGAATATCACGCGGCGTATTACCGAGACGCGGCGGG
CAAAGCTGGGTGTAACAAAAAACATTGTTATGGACGATGTAAGCGGCTGG
CGTTCACTGGAAACCTCTCTTATGGCTTTGCGTGAGGTGGTTGAAGCTTG
TGGGCCTGAACTGATTCGGCGTAGTTTGCTCACTCCGGAATGGCTCAACA
AGACGGTTTTTACAGCAGCTGAGCACTCAAATCGTTATGTCAGAGAGGCG
GCTATGGACATGGCTCGGGTGGTGGTCGATCGTTGTGTATGTATCAGCGA
CAGCGCTTCTTGTGGGAAAGTCATAGATTTTAATAGGCTGGCTGCTGTCG
TAGCAGGTGGCTTGGCAGATGCCTGGCCGCAAGTAGTGTATGCGGCTGTC
ATTGCGACTCGTAGTCTTCTGTTAACGGCTACAAACCATGTTGGTGTGGA
TGCCGAAGATCTTTTCGCCGAGCTCCTTCCTCCACTTTGTCAGTGCCGCT
ACTATACACCTGAGGGTGTTCAGGTACAAGCTCAGGAGACCTGGACTCAA
TTGTTTGCAGCCGCAAACAAAAGGAAGGATGACGCAGGCAGCGCTGGAAG
CGGGCGGGAGGCTGTCGCGCGATATGTGAAGGAAATGGTTGATTGCCATT
GTCGGGCACTTCAGCATGGACGCAGCCATTTCACACAGGTCGCCGCGTGT
TATGCCCTGAAGGAGCTAATGGAAAAGATCGATGAAAAGGTAACTTCACC
TTTCGCCAATCAAATATTGCGGGGGATCCTGCCCTGTTTACGGGCTTCGC
ACTGGGAGCTTCGCTCGGCAGGATACGTCGCCTTTGCTCAACTTTCACAA
AAATTTCCCGTGATTGTCATGTCACGACGAGAAGATGCTGTTAACGTCTG
TTTTGTTGGATTAGAAGATGAATCGTGGTCCATTCGCGAAGAGTCTGCAT
GGGCACTAGCCGCCATGACTCGATATGGGGAAAAAACAAAAATGCAGCAA
TGCCTTATCACCCGTCTTGAAGCCACACTGGATGCCGCTCGCCGTCAACC
TGTGGAGACCGAAGAAGAGCAGCTGCGACGCTTCAATGATGCCCAGGCTC
ACACGGGCGGGCCTGTATTCGGTTGTTGTGGAGGCCTCTTACATCCTCGT
GCAACTCCGTCGGGGGTCAATTTGCAGACCGACGTAGATATGTCTGCGTA
TCGTTACGCAGCTCAGCCCTGGGAAGTGTCTGAAGGCGCTTTGTACATCT
TTGTTGAACTATGCTCAAAAGATCTCCTACCACAGATTGACGCCGTATAC
GGAAGCACATTTGCAGACAGATATTTGCCTGTCCTAGCGGAGTTAGGCGG
TCTGCGTCATTTCTACAGCGCCGATCGTTTGCGTCAGAGCCTCTGGCGAA
TGCTACCTCGAGTGACAGAGCGCTTGGGCAAGCCGACCTTGAGGCGGTAC
TTAGATCTCTTCACACCCGCGCTTTTCAGTGCCCTCGCCTCGCCCGCGGC
CAGTCCCTTGACACGGCATGCGGCTATGGTATGCATAGCTGAGCTTTGCC
GACAAATGGGCCCCTCGTTTTTTGTGGGTCGGCTATCAGAGGCTGAACGC
CAGCTCTATTTTCGTCACGTTCCTCGTTGGTCTTCACCCCACGGCATTGC
TCGGGCATCGCGATCGGATGGTGGCCTAATTCCATCCCTCCTGCTTTCTC
AACCTGAAGTTGTCAGCATATAGGTGCGCGACCTCTTTCTCATTTGTCCT
GTACTGCATTGCTCGAATAATAACTTGAAGATAAAGAGTTTGACTCTTGG
GATACGTCCTTGAAACTGTTTAGCTCAAGCAATGTCTTACAGGCTAAGAA
TAAATTTCGAAGACAAAGGATGCGTTATAACACTTATGCTTTGACTCTTG
ATTCTTTATCGTACTTAGCGCACAACGTCAGAAA back to topprotein sequence of rna2489 >rna2489-protein ID=rna2489-protein|Name=rna2489|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MPLDYSRDGRINTAWQRASMKTAFVLATFFCGVHGFLVPGIPSASVARTN
SGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFF
VPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLI
VKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRG
PAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK back to topmRNA from alignment at CM002459.1:506190..509387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2489 ID=rna2489|Name=rna2489|organism=Nannochloropsis gaditana|type=mRNA|length=3198bp|location=Sequence derived from alignment at CM002459.1:506190..509387+ (Nannochloropsis gaditana)
CGCTCTAAGATACGCTGGTCTCGCAGGTGTGGATTATCGGGTCAATCCAG
ACTGAACGAAGGTCGTCGCACCGACAACATGGTCTGGAGATTTAGAAGCT
ATCGCATCGGATGCACCGGACTCTTGTGGAGAAGACAGGCTTACCCATCC
CTCTATCGTTCCTGTGCGTCACTGTGTATTGTCTGTGAGTGGTGTCAGAA
ATCTGCTGGGCCTCGGCCGGTTCGACCTCATGATATTTGAGCCTTGCACA
CCAGGTGCATAGCGGGGTGTTTTTTAATTGCTTATTGACAGTGATTTCAG
TGTGGCCCCAATTTTGtgcgggcaggaggcggtcgaCGAATGGTGCACGA
GTGATGGATGAGCAAGAGTTATGACGAAAGCTCACTTGGGAAACTACAAG
AGGCACATCATGTCGATCGATGTTTTGCATATTTCACTTTCTTAAGTTGC
TAAAATGCCTCTTGATTATTCCCGGGACGGGCGAATTAATACAGCTTGGC
AACGCGCAAGTATGAAGACTGCTTTTGTTCTCGCTACTTTCTTCTGTGGC
GTCCACGGATTTTTGGTGCCTGGCATCCCTTCTGCCTCAGTGGCGCGCAC
CAACAGCGGGCGAATCGTCACCAAGATGGCTGAAGCCGTGGGTGAAGAGC
CCTTTGTTCCTGATATGGACCGGCGCAAGCTTATGAACACGATCCTGTTG
GGCTCTGTGGGCCTGAATGTGGCGGGTCTGGCGGTGCCCTACATTGCCTT
CTTTGTGCCCCGCACAGGTGGTGGGGCCGGTGGGGGGCTGGCAGCAAAAG
ATGCACTTGGAGATGATGTAACCGTGCAAGGCTGGTTGTCGACACATCAA
GCGGGTGACCGAAGCTTGGTGCAGGGCCTGAAAGGCGATGCCACCTATCT
AAttgtgaaggaggacaagaccATTGAGAATTACGGTCTTAACGCTGTCT
GTACGCATCTAGGTTGTGTTGTACCCTGGAACAAAGCTGAAAGCAAATTT
ATTTGCCCGTGCCACGGCTCCCAGTATGACAAGACAGGGAAGGTCGTGCG
TGGCCCTGCACCGCTTTCTCTCGCCTTGGCGCATGTTAAGGAAAGTGATG
GGAAAgtcctcctcactccttgGACAGAAACTGATTTTCGAACGGACACA
GCCCCTTGGTACGTGAAGTGGGAAAATTGATCTAAATCCAGGTGCATCGC
CTTTCGTGTTTCACGACTTACATCCCTTCCATGCCATTTCTCCTACAATC
AGGTGGAAGTAGGCTGAACACATGGTATCTTACGGAAGTGTGTTAATTGG
TCACGGGGGAAGCAAGGAAGATAGAGCCCGCGCGTTCATCGACGGAAGGA
AACTATGAAGGAAACCATGTTTAACCCTGGAATGCTCTAGATGAGAGTTG
TGGGCTGACGCCAGGCAGGATCGGGTCCATTGTGTACAAAGCGCACCCAT
GAGTGCTTGTCTGTGATGGAGCGTCTGGTCATCTGGAGTCGGCTGCTTTG
AAGGTCTTACTGTTCCTCTTAAACATGGCTTGTGAAGAAGGCAGTGACAA
TGCGTCTTGAAAGGGCAAGAGACAAAGCTATATCAGTCACATCTTTTTAG
TTTTCTCGCTGTCGCTGTGATATAAAAACAAAATGCTATCAAACAACATC
TAGTTGAGACAACGAGGCCACACTGCCTAACAAATCGGTGATTCTCGTGG
TATGGTGATGGTCGTTGACGGCTAGTGAGGATCCGAAAAGCTCTACAAGG
CCCGTCCAGCGACAGCGCTATCTCCGCCCCTTGCACAAGCGAGCGCTAGA
ACGACACACGTCGTCGACTCGCCGATCTCATCCACCTGGCAGTCCGTCCA
AATCACGCATTACTAAGATTGTAATCGAGACCTTCGGTGACTCTTAGAAT
ACAAAAATATCAGGAGCTTGATATGGGGCAAAACGCTTACGAGAAGATCC
AGATGGCCTTGTCATGGCCAAATACATCTCCATAAGGGTAGATCGCTCGC
CTACTTTCGAGATGCATGCAAGTTGAAAAAATCATTCGAGTTTCAGCACG
AAAAAAAGTGCGTTTCGTAAATACAAAGGTTTCCCGAAACATATACCTAT
CGAATGAATTTATCTTGTTTTGATCACCTGCATTACATCGATTTTATACT
TTAGCGTACCCTAGCATCCTTCTTGGATAATGCTTGAATAGACATCTTCG
TCAGggtttttttctcctcccccttaccTGATGCATTCTTTCTAATATAC
TCTTCGTCGTCAATATTCTGAaactccatctccttctgcCCATTTCTTTC
GAAAAGAATATCTCATCTTTCTTGTGTCATTCTTCAACGTTCGATTTTTC
ATATCTCTTCGACGTCGCcacccttccatccctcgaTATTTTGAGTACTT
TCTGAGTCTCTATCCAAATTTGCGAGATCTCTGAAATCTTAAACATTCCT
TACACTGCTGAGCTGTCAACTTCTGATACCGTAACAATAAAACGAGATCC
ACGGCAATAATGAGAAAGGCCACAAACGTCATGGCAACTGGCAAAAAGCC
CCCCAGTTGATCAACAGGGAGTAAAGTAATGCCTATGGCTGTAGGGACAA
TGCTCATAAACGATCAAAGCAGGTGGTAATATAAAGTGCAAGTTGTCTAC
CCTGTATAGAATCTTGCAAGACGAGTCCTGAAAATAGATCGAATAAATTA
TTGCTCTCTTATCAGATAAGGGGCATGGCTAATACGAGAATGCGAAAGAG
ACTCGAACGCAAGTCAAGGATTCAAATAAAAGAGCATACAGCATGGGATG
CTGCATCGTAGAATATTCCAGCTTTGACACGCGCGTGCTGACCTTAAAAC
GCTGGCTACACAGTTGCAACAGAGTTTTGGAGTGAACAGGTGTAGATACA
TGTTTTGAACAAGGCAAGGACAGGAGCATGCTGAAAAGGAGAAATCAGAC
GAGGATGTAAGCAAGTTCTCTTTTCTCTGATCTTTTCAGACACTCGGTCG
AAATATCCACGCACTGAAGAGTGTTCGATCGTAGACGAAAGTGATGCACA
TGAGGGTGTATAAAGTAATATTCAAGCTATCGACTCACTGAAGGTACCTA
AGATGGAGATGAAGCCTCTGAAAGGGTCAACCCCGTGAATAAACACAAAG
TAAATATTATGTTAACCGAAAAGGATTTCACTCAACGCAGGGTACTGA back to topCoding sequence (CDS) from alignment at CM002459.1:506190..509387+ >rna2489 ID=rna2489|Name=rna2489|organism=Nannochloropsis gaditana|type=CDS|length=1428bp|location=Sequence derived from alignment at CM002459.1:506190..509387+ (Nannochloropsis gaditana)
ATGCCTCTTGATTATTCCCGGGACGGGCGAATTAATACAGCTTGGCAACG
CGCAAGTATGAAGACTGCTTTTGTTCTCGCTACTTTCTTCTGTGGCGTCC
ACGGATTTTTGGTGCCTGGCATCCCTTCTGCCTCAGTGGCGCGCACCAAC
AGCGGGCGAATCGTCACCAAGATGGCTGAAGCCGTGGGTGAAGAGCCCTT
TGTTCCTGATATGGACCGGCGCAAGCTTATGAACACGATCCTGTTGGGCT
CTGTGGGCCTGAATGTGGCGGGTCTGGCGGTGCCCTACATTGCCTTCTTT
GTGCCCCGCACAGGTGGTGGGGCCGGTGGGGGGCTGGCAGCAAAAGATGC
ACTTGGAGATGATGTAACCGTGCAAGGCTGGTTGTCGACACATCAAGCGG
GTGACCGAAGCTTGGTGCAGGGCCTGAAAGGCGATGCCACCTATCTAAtt
gtgaaggaggacaagaccATTGAGAATTACGGTCTTAACGCTGTCTGTAC
GCATCTAGGTTGTGTTGTACCCTGGAACAAAGCTGAAAGCAAATTTATTT
GCCCGTGCCACGGCTCCCAGTATGACAAGACAGGGAAGGTCGTGCGTGGC
CCTGCACCGCTTTCTCTCGCCTTGGCGCATGTTAAGGAAAGTGATGGGAA
AgtcctcctcactccttgGACAGAAACTGATTTTCGAACGGACACAGCCC
CTTGGTGGAAGTAGATGCCTCTTGATTATTCCCGGGACGGGCGAATTAAT
ACAGCTTGGCAACGCGCAAGTATGAAGACTGCTTTTGTTCTCGCTACTTT
CTTCTGTGGCGTCCACGGATTTTTGGTGCCTGGCATCCCTTCTGCCTCAG
TGGCGCGCACCAACAGCGGGCGAATCGTCACCAAGATGGCTGAAGCCGTG
GGTGAAGAGCCCTTTGTTCCTGATATGGACCGGCGCAAGCTTATGAACAC
GATCCTGTTGGGCTCTGTGGGCCTGAATGTGGCGGGTCTGGCGGTGCCCT
ACATTGCCTTCTTTGTGCCCCGCACAGGTGGTGGGGCCGGTGGGGGGCTG
GCAGCAAAAGATGCACTTGGAGATGATGTAACCGTGCAAGGCTGGTTGTC
GACACATCAAGCGGGTGACCGAAGCTTGGTGCAGGGCCTGAAAGGCGATG
CCACCTATCTAAttgtgaaggaggacaagaccATTGAGAATTACGGTCTT
AACGCTGTCTGTACGCATCTAGGTTGTGTTGTACCCTGGAACAAAGCTGA
AAGCAAATTTATTTGCCCGTGCCACGGCTCCCAGTATGACAAGACAGGGA
AGGTCGTGCGTGGCCCTGCACCGCTTTCTCTCGCCTTGGCGCATGTTAAG
GAAAGTGATGGGAAAgtcctcctcactccttgGACAGAAACTGATTTTCG
AACGGACACAGCCCCTTGGTGGAAGTAG back to top
|