EWM28243.1, cds2481 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|585110588|gb|EWM28243.1| (cytochrome b6-f complex iron-sulfur subunit [Nannochloropsis gaditana]) HSP 1 Score: 489.189 bits (1258), Expect = 4.935e-175 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query: 1 MPLDYSRDGRINTAWQRASMKTAFVLATFFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
MPLDYSRDGRINTAWQRASMKTAFVLATFFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK
Sbjct: 1 MPLDYSRDGRINTAWQRASMKTAFVLATFFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|298706644|emb|CBJ29582.1| (Cytochrome b6-f complex iron-sulfur subunit [Ectocarpus siliculosus]) HSP 1 Score: 268.47 bits (685), Expect = 5.949e-88 Identity = 130/195 (66.67%), Postives = 156/195 (80.00%), Query Frame = 0
Query: 43 SASVARTNSGRIVTK-MAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
SA R + R +K M + EE FVPDMDRR MN IL GS+G+NV GLAVPYIAFFVP GGG+GGG+ AKDA+G++VTV+ WL+TH G R L +G+KGDATYL+V EDK +++YG+ AVCTHLGCVVPWNKAE+KF+CPCHGSQYD+TGKV+RGPAPLSLAL+HV+E DGKV+ W ETDFRT PWW
Sbjct: 30 SAVAQRPTASRATSKAMKMSSNEEVFVPDMDRRTAMNLILAGSIGVNVLGLAVPYIAFFVPPGGGGSGGGVTAKDAIGNEVTVESWLATHGVGSRELAEGIKGDATYLVVTEDKKVQDYGIVAVCTHLGCVVPWNKAENKFMCPCHGSQYDQTGKVIRGPAPLSLALSHVEEVDGKVIFKEWKETDFRTGDKPWW 224
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|226503409|ref|NP_001141265.1| (iron-sulfur protein 2 [Zea mays] >gi|194689486|gb|ACF78827.1| unknown [Zea mays] >gi|194703650|gb|ACF85909.1| unknown [Zea mays] >gi|195655777|gb|ACG47356.1| cytochrome b6-f complex iron-sulfur subunit [Zea mays] >gi|1142706183|gb|AQK70107.1| iron-sulfur protein1 [Zea mays] >gi|1142706184|gb|AQK70108.1| iron-sulfur protein1 [Zea mays]) HSP 1 Score: 259.225 bits (661), Expect = 3.534e-84 Identity = 120/193 (62.18%), Postives = 142/193 (73.58%), Query Frame = 0
Query: 45 SVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
S+ R + R + A + VPDM++RKLMN +LLG++ L G+ VPY AFFVP G AGGG AKD LG+D+TV+ WL+TH DR+L QGLKGD TYL+V++DKT+ YG+NAVCTHLGCVVPWN AE+KFICPCHGSQY+ GKVVRGPAPLSLAL H DGKVL PW ETDFRT PWWK
Sbjct: 33 SMGRERAQRSIVCQAASSISADRVPDMEKRKLMNLLLLGAISLPTVGMVVPYGAFFVPAGSGNAGGGTYAKDKLGNDITVEAWLNTHGPNDRTLAQGLKGDPTYLVVEQDKTLATYGINAVCTHLGCVVPWNGAENKFICPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGEDPWWK 225
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|195612712|gb|ACG28186.1| (cytochrome b6-f complex iron-sulfur subunit [Zea mays]) HSP 1 Score: 258.84 bits (660), Expect = 4.747e-84 Identity = 120/193 (62.18%), Postives = 142/193 (73.58%), Query Frame = 0
Query: 45 SVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
S+ R + R + A + VPDM++RKLMN +LLG++ L G+ VPY AFFVP G AGGG AKD LG+D+TV+ WL+TH DR+L QGLKGD TYL+V++DKT+ YG+NAVCTHLGCVVPWN AE+KFICPCHGSQY+ GKVVRGPAPLSLAL H DGKVL PW ETDFRT PWWK
Sbjct: 33 SMGRERAQRSIVCQAASSISADRVPDMEKRKLMNLLLLGAISLPTVGMVVPYGAFFVPAGSGNAGGGTYAKDKLGNDITVEAWLNTHGPNDRTLAQGLKGDPTYLVVEQDKTLATYGINAVCTHLGCVVPWNGAENKFICPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGEDPWWK 225
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|194702912|gb|ACF85540.1| (unknown [Zea mays]) HSP 1 Score: 256.914 bits (655), Expect = 7.996e-84 Identity = 119/184 (64.67%), Postives = 141/184 (76.63%), Query Frame = 0
Query: 54 IVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
IV + A ++ + VPDM++RKLMN +LLG++ L G+ VPY AFFVP G AGGG AKD LG+D+TV+ WL+TH DR+L QGLKGD TYL+V++DKT+ YG+NAVCTHLGCVVPWN AE+KFICPCHGSQY+ GKVVRGPAPLSLAL H DGKVL PW ETDFRT PWWK
Sbjct: 10 IVCQAASSISAD-RVPDMEKRKLMNLLLLGAISLPTVGMVVPYGAFFVPAGSGNAGGGTYAKDKLGNDITVEAWLNTHGPNDRTLAQGLKGDPTYLVVEQDKTLATYGINAVCTHLGCVVPWNGAENKFICPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGEDPWWK 192
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|1204879471|ref|XP_021282541.1| (cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Herrania umbratica]) HSP 1 Score: 253.447 bits (646), Expect = 5.503e-82 Identity = 121/208 (58.17%), Postives = 147/208 (70.67%), Query Frame = 0
Query: 29 FFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
FC LV S V + + G +T A ++ + VPDM +R+LMN +LLG+V L + VPY AFFVP G GAG G AKDA+G+D+ WL TH GDR+L QGLKGD TYL+V++DKT+ YG+NAVCTHLGCVVPWN+AE++FICPCHGSQY+ G+VVRGPAPLSLALAH DGKV+ PW ETDFRT APWW
Sbjct: 21 LFCTSQALLVKPTRSQMVKK-DKGMRLTCQATSIPADDRVPDMGKRQLMNLLLLGTVSLPTGFMLVPYGAFFVPPGGLGAGEGTVAKDAIGNDIIATEWLKTHGPGDRTLTQGLKGDPTYLVVEKDKTLATYGINAVCTHLGCVVPWNQAENRFICPCHGSQYNDQGRVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGEAPWW 227
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|1117490160|ref|XP_019437042.1| (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [Lupinus angustifolius]) HSP 1 Score: 252.677 bits (644), Expect = 1.262e-81 Identity = 121/208 (58.17%), Postives = 148/208 (71.15%), Query Frame = 0
Query: 30 FCGVHGFLVPGIPSASVARTNSGRI-VTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
FC +V P + N R+ VT A ++ E VPDM++RKLMN +LLG++ L AG+ VPY FF P G + GG+ AKDALG+DV WL TH GDR+L QGLKGD TYL+V++D+T+ YG+NAVCTHLGCVVPWNKAE+KF+CPCHGSQY+ G+VVRGPAPLSLAL+H DGKV+ PW ETDFRT APWW
Sbjct: 22 FCPSQALVVK--PMSPKIMGNGKRMRVTCQATSIAPE-RVPDMEKRKLMNLLLLGAISLPTAGMLVPYATFFAPPGSGSSTGGVVAKDALGNDVFADQWLKTHGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPWNKAENKFMCPCHGSQYNDQGRVVRGPAPLSLALSHADVDDGKVVFVPWVETDFRTGEAPWW 226
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|1063473801|ref|XP_017971970.1| (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Theobroma cacao]) HSP 1 Score: 252.677 bits (644), Expect = 1.408e-81 Identity = 121/208 (58.17%), Postives = 147/208 (70.67%), Query Frame = 0
Query: 29 FFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
FC LV + V + + G +T A ++ + VPDM +R+LMN +LLG+V L + VPY AFFVP G GAG G AKDA+G+DV WL TH GDR+L QGLKGD TYL+V++DKT+ YG+N VCTHLGCVVPWN+AE+KFICPCHGSQY++ G+VVRGPAPLSLALAH DGKV+ PW ETDFRT APWW
Sbjct: 21 LFCPSQALLVKPTRTQMV-KKDKGMRLTCQATSIPADDRVPDMGKRQLMNLLLLGAVSLPSGFMLVPYGAFFVPAGGRGAGDGTVAKDAIGNDVIAAEWLKTHGPGDRTLAQGLKGDPTYLVVEKDKTLATYGINGVCTHLGCVVPWNQAENKFICPCHGSQYNEQGRVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGEAPWW 227
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|508707371|gb|EOX99267.1| (Photosynthetic electron transfer C [Theobroma cacao]) HSP 1 Score: 251.906 bits (642), Expect = 2.682e-81 Identity = 121/208 (58.17%), Postives = 146/208 (70.19%), Query Frame = 0
Query: 29 FFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
FC LV + V + + G +T A ++ + VPDM +R+LMN +LLG+V L + VPY AFFVP G GAG G AKDA G+DV WL TH GDR+L QGLKGD TYL+V++DKT+ YG+N VCTHLGCVVPWN+AE+KFICPCHGSQY++ G+VVRGPAPLSLALAH DGKV+ PW ETDFRT APWW
Sbjct: 21 LFCPSQALLVKPTRTQMV-KKDKGMRLTCQATSIPADDRVPDMGKRQLMNLLLLGAVSLPSGFMLVPYGAFFVPAGGRGAGDGTVAKDAFGNDVIAAEWLKTHGPGDRTLTQGLKGDPTYLVVEKDKTLATYGINGVCTHLGCVVPWNQAENKFICPCHGSQYNEQGRVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGEAPWW 227
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|568831093|ref|XP_006469814.1| (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Citrus sinensis]) HSP 1 Score: 251.521 bits (641), Expect = 4.290e-81 Identity = 118/208 (56.73%), Postives = 146/208 (70.19%), Query Frame = 0
Query: 29 FFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
FC FLV + V + G + A ++ + VPDM +R+LMN +LLG+V L + VPY FF P G AGGG AKDA+G+D+ WL+TH GDR+L +GLKGD TYL+V++DKT+ +YG+NAVCTHLGCVVPWN AE+KFICPCHGSQY+ G+VVRGPAPLSLALAH +GKV+ PWTETDFRT APWW
Sbjct: 22 MFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 228 The following BLAST results are available for this feature:
BLAST of EWM28243.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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