EWM28243.1, cds2481 (CDS) Nannochloropsis gaditana

Overview
NameEWM28243.1
Unique Namecds2481
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:506644..507347 +
Alignment locationCM002459.1:507442..507451 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28243.1
Productcytochrome b6-f complex iron-sulfur subunit
Orig transcript idgnl|cribi|Naga_100004g129.9174.mrna
GenePETC
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:506644..507347 +
CM002459.1supercontigCM002459.1:507442..507451 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0009579thylakoid
GO:0005886plasma membrane
GO:0009507chloroplast
GO:0042651thylakoid membrane
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0045158electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
GO:0016679oxidoreductase activity, acting on diphenols and related substances as donors
GO:0009496plastoquinol--plastocyanin reductase activity
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0008121ubiquinol-cytochrome-c reductase activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0015979photosynthesis
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR023960Cyt_b6_f_Rieske
IPR014349Rieske_Fe-S_prot
IPR014909Cyt_b6-f_cplx_Fe-S_su
IPR017941Rieske_2Fe-2S
IPR005805Rieske_Fe-S_prot_C
Homology
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|585110588|gb|EWM28243.1| (cytochrome b6-f complex iron-sulfur subunit [Nannochloropsis gaditana])

HSP 1 Score: 489.189 bits (1258), Expect = 4.935e-175
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MPLDYSRDGRINTAWQRASMKTAFVLATFFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
            MPLDYSRDGRINTAWQRASMKTAFVLATFFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK
Sbjct:    1 MPLDYSRDGRINTAWQRASMKTAFVLATFFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237          
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|298706644|emb|CBJ29582.1| (Cytochrome b6-f complex iron-sulfur subunit [Ectocarpus siliculosus])

HSP 1 Score: 268.47 bits (685), Expect = 5.949e-88
Identity = 130/195 (66.67%), Postives = 156/195 (80.00%), Query Frame = 0
Query:   43 SASVARTNSGRIVTK-MAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
            SA   R  + R  +K M  +  EE FVPDMDRR  MN IL GS+G+NV GLAVPYIAFFVP  GGG+GGG+ AKDA+G++VTV+ WL+TH  G R L +G+KGDATYL+V EDK +++YG+ AVCTHLGCVVPWNKAE+KF+CPCHGSQYD+TGKV+RGPAPLSLAL+HV+E DGKV+   W ETDFRT   PWW
Sbjct:   30 SAVAQRPTASRATSKAMKMSSNEEVFVPDMDRRTAMNLILAGSIGVNVLGLAVPYIAFFVPPGGGGSGGGVTAKDAIGNEVTVESWLATHGVGSRELAEGIKGDATYLVVTEDKKVQDYGIVAVCTHLGCVVPWNKAENKFMCPCHGSQYDQTGKVIRGPAPLSLALSHVEEVDGKVIFKEWKETDFRTGDKPWW 224          
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|226503409|ref|NP_001141265.1| (iron-sulfur protein 2 [Zea mays] >gi|194689486|gb|ACF78827.1| unknown [Zea mays] >gi|194703650|gb|ACF85909.1| unknown [Zea mays] >gi|195655777|gb|ACG47356.1| cytochrome b6-f complex iron-sulfur subunit [Zea mays] >gi|1142706183|gb|AQK70107.1| iron-sulfur protein1 [Zea mays] >gi|1142706184|gb|AQK70108.1| iron-sulfur protein1 [Zea mays])

HSP 1 Score: 259.225 bits (661), Expect = 3.534e-84
Identity = 120/193 (62.18%), Postives = 142/193 (73.58%), Query Frame = 0
Query:   45 SVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
            S+ R  + R +   A +      VPDM++RKLMN +LLG++ L   G+ VPY AFFVP   G AGGG  AKD LG+D+TV+ WL+TH   DR+L QGLKGD TYL+V++DKT+  YG+NAVCTHLGCVVPWN AE+KFICPCHGSQY+  GKVVRGPAPLSLAL H    DGKVL  PW ETDFRT   PWWK
Sbjct:   33 SMGRERAQRSIVCQAASSISADRVPDMEKRKLMNLLLLGAISLPTVGMVVPYGAFFVPAGSGNAGGGTYAKDKLGNDITVEAWLNTHGPNDRTLAQGLKGDPTYLVVEQDKTLATYGINAVCTHLGCVVPWNGAENKFICPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGEDPWWK 225          
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|195612712|gb|ACG28186.1| (cytochrome b6-f complex iron-sulfur subunit [Zea mays])

HSP 1 Score: 258.84 bits (660), Expect = 4.747e-84
Identity = 120/193 (62.18%), Postives = 142/193 (73.58%), Query Frame = 0
Query:   45 SVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
            S+ R  + R +   A +      VPDM++RKLMN +LLG++ L   G+ VPY AFFVP   G AGGG  AKD LG+D+TV+ WL+TH   DR+L QGLKGD TYL+V++DKT+  YG+NAVCTHLGCVVPWN AE+KFICPCHGSQY+  GKVVRGPAPLSLAL H    DGKVL  PW ETDFRT   PWWK
Sbjct:   33 SMGRERAQRSIVCQAASSISADRVPDMEKRKLMNLLLLGAISLPTVGMVVPYGAFFVPAGSGNAGGGTYAKDKLGNDITVEAWLNTHGPNDRTLAQGLKGDPTYLVVEQDKTLATYGINAVCTHLGCVVPWNGAENKFICPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGEDPWWK 225          
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|194702912|gb|ACF85540.1| (unknown [Zea mays])

HSP 1 Score: 256.914 bits (655), Expect = 7.996e-84
Identity = 119/184 (64.67%), Postives = 141/184 (76.63%), Query Frame = 0
Query:   54 IVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWWK 237
            IV + A ++  +  VPDM++RKLMN +LLG++ L   G+ VPY AFFVP   G AGGG  AKD LG+D+TV+ WL+TH   DR+L QGLKGD TYL+V++DKT+  YG+NAVCTHLGCVVPWN AE+KFICPCHGSQY+  GKVVRGPAPLSLAL H    DGKVL  PW ETDFRT   PWWK
Sbjct:   10 IVCQAASSISAD-RVPDMEKRKLMNLLLLGAISLPTVGMVVPYGAFFVPAGSGNAGGGTYAKDKLGNDITVEAWLNTHGPNDRTLAQGLKGDPTYLVVEQDKTLATYGINAVCTHLGCVVPWNGAENKFICPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGEDPWWK 192          
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|1204879471|ref|XP_021282541.1| (cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Herrania umbratica])

HSP 1 Score: 253.447 bits (646), Expect = 5.503e-82
Identity = 121/208 (58.17%), Postives = 147/208 (70.67%), Query Frame = 0
Query:   29 FFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
             FC     LV    S  V + + G  +T  A ++  +  VPDM +R+LMN +LLG+V L    + VPY AFFVP  G GAG G  AKDA+G+D+    WL TH  GDR+L QGLKGD TYL+V++DKT+  YG+NAVCTHLGCVVPWN+AE++FICPCHGSQY+  G+VVRGPAPLSLALAH    DGKV+  PW ETDFRT  APWW
Sbjct:   21 LFCTSQALLVKPTRSQMVKK-DKGMRLTCQATSIPADDRVPDMGKRQLMNLLLLGTVSLPTGFMLVPYGAFFVPPGGLGAGEGTVAKDAIGNDIIATEWLKTHGPGDRTLTQGLKGDPTYLVVEKDKTLATYGINAVCTHLGCVVPWNQAENRFICPCHGSQYNDQGRVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGEAPWW 227          
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|1117490160|ref|XP_019437042.1| (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [Lupinus angustifolius])

HSP 1 Score: 252.677 bits (644), Expect = 1.262e-81
Identity = 121/208 (58.17%), Postives = 148/208 (71.15%), Query Frame = 0
Query:   30 FCGVHGFLVPGIPSASVARTNSGRI-VTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
            FC     +V   P +     N  R+ VT  A ++  E  VPDM++RKLMN +LLG++ L  AG+ VPY  FF P   G + GG+ AKDALG+DV    WL TH  GDR+L QGLKGD TYL+V++D+T+  YG+NAVCTHLGCVVPWNKAE+KF+CPCHGSQY+  G+VVRGPAPLSLAL+H    DGKV+  PW ETDFRT  APWW
Sbjct:   22 FCPSQALVVK--PMSPKIMGNGKRMRVTCQATSIAPE-RVPDMEKRKLMNLLLLGAISLPTAGMLVPYATFFAPPGSGSSTGGVVAKDALGNDVFADQWLKTHGPGDRTLTQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPWNKAENKFMCPCHGSQYNDQGRVVRGPAPLSLALSHADVDDGKVVFVPWVETDFRTGEAPWW 226          
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|1063473801|ref|XP_017971970.1| (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Theobroma cacao])

HSP 1 Score: 252.677 bits (644), Expect = 1.408e-81
Identity = 121/208 (58.17%), Postives = 147/208 (70.67%), Query Frame = 0
Query:   29 FFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
             FC     LV    +  V + + G  +T  A ++  +  VPDM +R+LMN +LLG+V L    + VPY AFFVP  G GAG G  AKDA+G+DV    WL TH  GDR+L QGLKGD TYL+V++DKT+  YG+N VCTHLGCVVPWN+AE+KFICPCHGSQY++ G+VVRGPAPLSLALAH    DGKV+  PW ETDFRT  APWW
Sbjct:   21 LFCPSQALLVKPTRTQMV-KKDKGMRLTCQATSIPADDRVPDMGKRQLMNLLLLGAVSLPSGFMLVPYGAFFVPAGGRGAGDGTVAKDAIGNDVIAAEWLKTHGPGDRTLAQGLKGDPTYLVVEKDKTLATYGINGVCTHLGCVVPWNQAENKFICPCHGSQYNEQGRVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGEAPWW 227          
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|508707371|gb|EOX99267.1| (Photosynthetic electron transfer C [Theobroma cacao])

HSP 1 Score: 251.906 bits (642), Expect = 2.682e-81
Identity = 121/208 (58.17%), Postives = 146/208 (70.19%), Query Frame = 0
Query:   29 FFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
             FC     LV    +  V + + G  +T  A ++  +  VPDM +R+LMN +LLG+V L    + VPY AFFVP  G GAG G  AKDA G+DV    WL TH  GDR+L QGLKGD TYL+V++DKT+  YG+N VCTHLGCVVPWN+AE+KFICPCHGSQY++ G+VVRGPAPLSLALAH    DGKV+  PW ETDFRT  APWW
Sbjct:   21 LFCPSQALLVKPTRTQMV-KKDKGMRLTCQATSIPADDRVPDMGKRQLMNLLLLGAVSLPSGFMLVPYGAFFVPAGGRGAGDGTVAKDAFGNDVIAAEWLKTHGPGDRTLTQGLKGDPTYLVVEKDKTLATYGINGVCTHLGCVVPWNQAENKFICPCHGSQYNEQGRVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGEAPWW 227          
BLAST of EWM28243.1 vs. NCBI_GenBank
Match: gi|568831093|ref|XP_006469814.1| (PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Citrus sinensis])

HSP 1 Score: 251.521 bits (641), Expect = 4.290e-81
Identity = 118/208 (56.73%), Postives = 146/208 (70.19%), Query Frame = 0
Query:   29 FFCGVHGFLVPGIPSASVARTNSGRIVTKMAEAVGEEPFVPDMDRRKLMNTILLGSVGLNVAGLAVPYIAFFVPRTGGGAGGGLAAKDALGDDVTVQGWLSTHQAGDRSLVQGLKGDATYLIVKEDKTIENYGLNAVCTHLGCVVPWNKAESKFICPCHGSQYDKTGKVVRGPAPLSLALAHVKESDGKVLLTPWTETDFRTDTAPWW 236
             FC    FLV    +  V +   G  +   A ++  +  VPDM +R+LMN +LLG+V L    + VPY  FF P   G AGGG  AKDA+G+D+    WL+TH  GDR+L +GLKGD TYL+V++DKT+ +YG+NAVCTHLGCVVPWN AE+KFICPCHGSQY+  G+VVRGPAPLSLALAH    +GKV+  PWTETDFRT  APWW
Sbjct:   22 MFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPAD-RVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 228          
The following BLAST results are available for this feature:
BLAST of EWM28243.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110588|gb|EWM28243.1|4.935e-175100.00cytochrome b6-f complex iron-sulfur subunit [Nanno... [more]
gi|298706644|emb|CBJ29582.1|5.949e-8866.67Cytochrome b6-f complex iron-sulfur subunit [Ectoc... [more]
gi|226503409|ref|NP_001141265.1|3.534e-8462.18iron-sulfur protein 2 [Zea mays] >gi|194689486|gb|... [more]
gi|195612712|gb|ACG28186.1|4.747e-8462.18cytochrome b6-f complex iron-sulfur subunit [Zea m... [more]
gi|194702912|gb|ACF85540.1|7.996e-8464.67unknown [Zea mays][more]
gi|1204879471|ref|XP_021282541.1|5.503e-8258.17cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
gi|1117490160|ref|XP_019437042.1|1.262e-8158.17PREDICTED: cytochrome b6-f complex iron-sulfur sub... [more]
gi|1063473801|ref|XP_017971970.1|1.408e-8158.17PREDICTED: cytochrome b6-f complex iron-sulfur sub... [more]
gi|508707371|gb|EOX99267.1|2.682e-8158.17Photosynthetic electron transfer C [Theobroma caca... [more]
gi|568831093|ref|XP_006469814.1|4.290e-8156.73PREDICTED: cytochrome b6-f complex iron-sulfur sub... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2489rna2489Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications