rna2487, rna2487 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2487
Unique Name	rna2487
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3119
Alignment location	CM002459.1:500279..503436 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g127.9226.mrna
Orig protein id	gnl\|cribi\|Naga_100004g127.9226
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:500279..503436 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g127	gene2378	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2487	rna2487-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28295.1	cds2479	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:500279..503436+
coding sequence from alignment at CM002459.1:500279..503436+

mRNA sequence

>rna2487 ID=rna2487|Name=rna2487|organism=Nannochloropsis gaditana|type=mRNA|length=3119bp
GGCCTGCTTATTAAATGGCAGTGAGACTCGTACTGATGGGATAGTGTGTG
GGCCTAATAAAATTATTCAAGTCGTATTTCAATATTTGAATATATCATCT
CATAGTTGGCAGACCTTGCATGGTTGTGGAGCGGTTTTGGCAGCGGCAGC
AGGTTTTTTCGACTCCTTCAACAGCCGTGTCGGCCTACGACTATCACGAT
AAGGGGGATGGCACGAGCGCGGAGTCTGTATGACATGGGCGTCTGGTCAA
TAACCACACGCGATGAATACGTCAGCTTTCTTCAGTCAAAGAAAAATCTC
TCAAAGGCCTCCATTCATAGCTATTGTTGGCGGCTTGAAACGCTGTTTCG
TGCCCTGATGACGGGCAAGCAAAAGCAAGGGAACTTAGATCGAGGCCAAA
TAAGACAATTAATCGAACATAATTTGGAGGAAGCAGAGCGCCTTGTGGCT
CAAGACGACCGCCGTAGCCATTGGTGCTTGCTTAAGGAATTTTTAGAGCT
GCCATCTGCTCCTTTATGCGCGGGCGAGAGAGGAAGAGATGAGCAGCTGT
TGGACAGTGTACGGGGAGTGGGAGAGGACGAGGTACGCTTTCCTGTCCAT
ACTCTTGAGAACGAGGCAAATAAGCACAAATCCATTTCACCGAATTCTTT
TCGAAAGAGAAATGGAATGATGGCAGCATCAAAAGGGAAGCACGAAAATA
AGGTTTGGGACATGGAGCTCAAGAAGGACTACAGGACTTGGCTGAGAGAG
CGCGGCGTGAAAGAGAGGACTTGCGGGTCATACTGCACATTCGTGCATAA
CCTTCTGCGAGCATTAGCAGATGCACGGAAGCCAGTGCCATATAGGAGCC
ACCGGCAGCAAACCACCACGATACCTATCACATTACTGCCTACATTCCCA
CAATCACGCTTGTCACACGAAGAAGGAAAAGAAGAAAGAAAACGAGAACA
ACAGGAAGAGCCCTCTGTATTAGCCATGCAAGACCAGGAGCACCATCAAC
AGCAAATATCCTATCAGCAGCCTCGTGCTGGGCAGCGTGAATGTCTACAT
GAGGGGCTACAAAGCGGTAACGCCATTTTATTGCTTGCTTCTCATGAAGA
CTCGGCAATTGGGGATGCATATTGTTATCGCGGCGACAGAAGTGGACAGG
AGGCTTCCGAAGACAATTTAAGAGTGGCAGAAGACAACGAAGTAGTCGCA
ATGGAGGGCGGTGAAGCGGGGATTGTTGCGCCCCGGCGGGAGGGATTAAA
CAGAGGGGAGCTGATCGAGCTACTGGATGAGCAACAAGAAGAGGCGCAAC
GCATTGTTCGTCAGTCTAAGAAAAACCGCTATCTACGGTCATTTCGAGAA
TTTTTGGGCATGAGTAACCATGACGATCACATCGTCAAAAATTCTAGGCA
GTGGACAGATCGAGTAGGAGGAGCTTATAAAAAGTGGATCGGAGCTGGGG
GTGCGAATTGTCCACATGCCCGCACTCGAGGTTACGTTGGTGCAGCTCGA
AGTATTCTGCGGGTCATAAAACGGAAAGGATGGGTCCAAGAGGCGTTCGG
AGGGCCTCCGCTCACCAGCGCTGATATTTGCTTGGCCATTGAAGCCCATA
AAGAGGAACTGCAACAGATTTGTGACAAGGCAGATGATGAATGCCTACAA
GCATTTTGCCGTTATTTGCGGCGACCGGAAAATAAGGGAGATGGCGAAGA
AGAGGAAGAGAAGGACTTCCATTCTTCTCCGGCAGTCTCATCGCTTGGGA
TAGGAGCCGAGGACGATGAGGCTGCTGAAGATATGGGAGATCATAAAATT
GGTACTAATCCCCCTACTGCAGTCAAGGGACTCCATGAACTGACATCGAC
GAAGGCATGTATTCATCGTCCTCTGAAGTCAGACGCGGGCATCGGGCACA
TGAATCGTGTTGTTCAATCTTCAGAACACCCCGCAAGATGCGGGGCTGAA
GAGGAGACTGTCGATAATCAGCAGCACGAATGGCCGATTTTTAATTCAGT
GGGTCACAAAAGAAAGCGACCGGATACAACCAGGGAGCAAGGGATGGAAC
ACCGTATCAGATCACTAACACTCGACCTAGAATGTAAGACACGAGAACGC
AACGCGGCACTCGCGCGCATACATGCGCTAGAGCTAGAGATACAGCATTT
GCGAGATCGCTTTTTGAGTACATCAACTCCGCCTGTCTCGGCTGTACAAG
AAGGACCTACCGAATGTCAGCAACAACATACACGTGGTGTGGAGATGATT
TTAAACCATCCCGGGGTCACAGAACAGGAAAATATAGGCGCACCGGGAGC
TGCAATCACACACAGTGTACCAGGCCATACTTGTGGAGAACGTGAGGGAG
GCATTTGTGCAGATGATAGAGTGGTAGAAACGAACGCAAAGGATGAAGCT
GTGTCCTTCAGGAACAAGATGGGACGAGAAGGTGAGAGAGCAGAGGGTGA
TCCCGGCTTTTTGTTGCTTGAAGCTGATGCACATTCTAATTGGCAACGTC
GAGACCAGTATGATCAGCTTCAGCGCCGACAGTCAGTTGCGCTACCACGC
GCTGGGGTTGACTTGACCGATGGAAAACCCCAGGAAGAGGACAAGAGGCA
GCGCTGCGTCTTCCGACACCACGTTCAGCACATCGAAGTACATGATCAAC
GGAACGCTTGCGACCATCAGGACATGCACCTAGATGATGGAGAGGATCAG
GACCATCATTTACGCATCGTGGGAGAACGAGAAACGGAAAATCTTCAGCA
TCTTCATGACGCTTCATTTGCATGCTCCCTCGGCCTTCGTGAGATGGGAG
AAGGGAAAGGAGATGGGGTGGAGAGCCGGGACTGTGTGGGTCATAATTCT
CGCATGCACACCATTGCCACGCTGGGTCTTGCATCCGACATTACGGAAAG
GGCAGGTGTGGAAGAAAATCACACCATTCGTCAGGGATGGTAGAATGCCC
ATGAAATCTAGAGCAGTCGTACACAGATATGACACGCGATAAGTTTGAAG
GATCATCGCGAATCAAAGTAGGCCCACGCACATTGTTCTGTCGAAAATTA
GAGAATATTTTTCTGACGTTGTGCGCTAAGTACGATAAAGAATCAAGAGT
CAAAGCATAAGTGTTATAA

protein sequence of rna2487

>rna2487-protein ID=rna2487-protein|Name=rna2487|organism=Nannochloropsis gaditana|type=polypeptide|length=911bp
MARARSLYDMGVWSITTRDEYVSFLQSKKNLSKASIHSYCWRLETLFRAL
MTGKQKQGNLDRGQIRQLIEHNLEEAERLVAQDDRRSHWCLLKEFLELPS
APLCAGERGRDEQLLDSVRGVGEDEVRFPVHTLENEANKHKSISPNSFRK
RNGMMAASKGKHENKVWDMELKKDYRTWLRERGVKERTCGSYCTFVHNLL
RALADARKPVPYRSHRQQTTTIPITLLPTFPQSRLSHEEGKEERKREQQE
EPSVLAMQDQEHHQQQISYQQPRAGQRECLHEGLQSGNAILLLASHEDSA
IGDAYCYRGDRSGQEASEDNLRVAEDNEVVAMEGGEAGIVAPRREGLNRG
ELIELLDEQQEEAQRIVRQSKKNRYLRSFREFLGMSNHDDHIVKNSRQWT
DRVGGAYKKWIGAGGANCPHARTRGYVGAARSILRVIKRKGWVQEAFGGP
PLTSADICLAIEAHKEELQQICDKADDECLQAFCRYLRRPENKGDGEEEE
EKDFHSSPAVSSLGIGAEDDEAAEDMGDHKIGTNPPTAVKGLHELTSTKA
CIHRPLKSDAGIGHMNRVVQSSEHPARCGAEEETVDNQQHEWPIFNSVGH
KRKRPDTTREQGMEHRIRSLTLDLECKTRERNAALARIHALELEIQHLRD
RFLSTSTPPVSAVQEGPTECQQQHTRGVEMILNHPGVTEQENIGAPGAAI
THSVPGHTCGEREGGICADDRVVETNAKDEAVSFRNKMGREGERAEGDPG
FLLLEADAHSNWQRRDQYDQLQRRQSVALPRAGVDLTDGKPQEEDKRQRC
VFRHHVQHIEVHDQRNACDHQDMHLDDGEDQDHHLRIVGERETENLQHLH
DASFACSLGLREMGEGKGDGVESRDCVGHNSRMHTIATLGLASDITERAG
VEENHTIRQGW

mRNA from alignment at CM002459.1:500279..503436+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2487 ID=rna2487|Name=rna2487|organism=Nannochloropsis gaditana|type=mRNA|length=3158bp|location=Sequence derived from alignment at CM002459.1:500279..503436+ (Nannochloropsis gaditana)
TGGCAGACCTTGCATGGTTGTGGAGCGGTtttggcagcggcagcaggtTT
TTTCGACTCCTTCAACAGCCGTGTCGGCCTACGACTATCACGATAAGGGT
AGGTATCTGGGAGGATAAAACGTGTGTATGGTGGCTTCTTGCATCTTACA
GATGTTTTATTCTACTAGAGAATAGGTGTATATTACCGTATTGAGGTTTT
TCCCCTTTTGCTGGCTCGTTCTTATCGCCTGGTGGAACAACAGGGGATGG
CACGAGCGCGGAGTCTGTATGACATGGGCGTCTGGTCAATAACCACACGC
GATGAATACGTCAGCTTTCTTCAGTCAAAGAAAAATCTCTCAAAGGCCTC
CATTCATAGCTATTGTTGGCGGCTTGAAACGCTGTTTCGTGCCCTGATGA
CGGGCaagcaaaagcaagggaACTTAGATCGAGGCCAAATAAGACAATTA
ATCGAACATAAtttggaggaagcagagcgCCTTGTGGCTCAAGACGACCG
CCGTAGCCATTGGTGCTTGCTTAAGGAATTTTTAGAGCTGCCATCTGCTC
CTTTATGCgcgggcgagagaggaagagatgagCAGCTGTTGGACAGTGTa
cggggagtgggagaggacgaggtacGCTTTCCTGTCCATACTCTTGAGAA
CGAGGCAAATAAGCACAAATCCATTTCACCGAATTCTTTTCGAAAGAGAA
ATGGAATGATGGCAGCATCAAAAGGGAAGCACGAAAATAAGGTTTGGGAC
ATGGAGCTCAAGAAGGACTACAGGACTTGGCTGAGAGAGCGCGGCGTGAA
AGAGAGGACTTGCGGGTCATACTGCACATTCGTGCATAACCTTCTGCGAG
CATTAGCAGATGCACGGAAGCCAGTGCCATATAGGAGCCACCGGCAGCAA
ACCACCACGATACCTATCACATTACTGCCTACATTCCCACAATCACGCTT
GTCacacgaagaaggaaaagaagaaagaaaacgaGAACAACAGGAAGAGC
CCTCTGTATTAGCCATGCAAGACCAGGAGCACCATCAACAGCAAATATCC
TATCAGCAGCCTCGTGCTGGGCAGCGTGAATGTCTACATGAGGGGCTACA
AAGCGGTAACGCCATTTTATTGCTTGCTTCTCATGAAGACTCGGCAATTG
GGGATGCATATTGTTATCGCGGCGACAGAAGTGGACAGGAGGCTTCCGAA
GACAATTTAAGAGTGGCAGAAGACAACGAAGTAGTCGCAATGGAGGGCGG
TGAAGCGGGGATTGTTGCGccccggcgggagggatTAAACAGAGGGGAGC
TGATCGAGCTACTGGATGAGCAACAAGAAGAGGCGCAACGCATTGTTCGT
CAGTCTAAGAAAAACCGCTATCTACGGTCATTTCGAGAATTTTTGGGCAT
GAGTAACCATGACGATCACATCGTCAAAAATTCTAGGCAGTGGACAGATC
GAGTAGGAGGAGCTTATAAAAAGTGGATCGGAGCTGGGGGTGCGAATTGT
CCACATGCCCGCACTCGAGGTTACGTTGGTGCAGCTCGAAGTATTCTGCG
GGTCATAAAACGGAAAGGATGGGTCCAAGAGGCGTTCGGAGGGCCTCCGC
TCACCAGCGCTGATATTTGCTTGGCCATTGAAGCCCATAAAGAGGAACTG
CAACAGATTTGTGACAAGGCAGATGATGAATGCCTACAAGCATTTTGCCG
TTATTTGCGGCGACCGGAAAATAAGGGAgatggcgaagaagaggaagaga
aggacttCCATTCTTCTCCGGCAGTCTCATCGCTTGGGATAGGAgccgag
gacgatgaggctGCTGAAGATATGGGAGATCATAAAATTGGTACTAATCC
CCCTACTGCAGTCAAGGGACTCCATGAACTGACATCGACGAAGGCATGTA
TTCATCGTCCTCTGAAGTCAGACGCGGGCATCGGGCACATGAATCGTGTT
GTTCAATCTTCAGAACACCCCGCAAGATGCGGGGCTGAAGAGGAGACTGT
CGATAATCAGCAGCACGAATGGCCGATTTTTAATTCAGTGGGTCACAAAA
GAAAGCGACCGGATACAACCAGGGAGCAAGGGATGGAACACCGTATCAGA
TCACTAACACTCGACCTAGAATGTAAGACACGAGAACGCAACGCGGCACT
CGCGCGCATACATGCGCTAGAGCTAGAGATACAGCATTTGCGAGATCGCT
TTTTGAGTACATCAACTCCGCCTGTCTCGGCTGTACAAGAAGGACCTACC
GAATGTCAGCAACAACATACACGTGGTGTGGAGATGATTTTAAACCATCC
CGGGGTCACAGAACAGGAAAATATAGGCGCACCGGGAGCTGCAATCACAC
ACAGTGTACCAGGCCATACTTGTGGAGAACGTGAGGGAGGCATTTGTGCA
GATGATAGAGTGGTAGAAACGAACGCAAAGGATGAAGCTGTGTCCTTCAG
GAACAAGATGGGACGAGAAGGTGAGAGAGCAGAGGGTGATCCCGGCTTTT
TGTTGCTTGAAGCTGATGCACATTCTAATTGGCAACGTCGAGACCAGTAT
GATCAGCTTCAGCGCCGACAGTCAGTTGCGCTACCACGCGCTGGGGTTGA
CTTGACCGATGGAAAACcccaggaagaggacaagaggcAGCGCTGCGTCT
TCCGACACCACGTTCAGCACATCGAAGTACATGATCAACGGAACGCTTGC
GACCATCAGGACATGCACCTAGATGATGGAGAGGATCAGGACCATCATTT
ACGCATCGTGGGAGAACGAGAAACGGAAAATCTTCAGCATCTTCATGACG
CTTCATTTGCATGCTCCCTCGGCCTTCGTGAgatgggagaagggaaagga
gatggggTGGAGAGCCGGGACTGTGTGGGTCATAATTCTCGCATGCACAC
CATTGCCACGCTGGGTCTTGCATCCGACATTACGGAAAGGGCAGGTGTGG
AAGAAAATCACACCATTCGTCAGGGATGGTAGAATGCCCATGAAATCTAG
AGCAGTCGTACACAGATATGACACGCGATAAGTTTGAAGGATCATCGCGA
ATCAAAGTAGGCCCACGCACATTGTTCTGTCGAAAATTAGAGAATATTTT
TCTGACGTTGTGCGCTAAGTACGATAAAGAATCAAGAGTCAAAGCATAAG
TGTTATAA

Coding sequence (CDS) from alignment at CM002459.1:500279..503436+

>rna2487 ID=rna2487|Name=rna2487|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at CM002459.1:500279..503436+ (Nannochloropsis gaditana)
ATGGCACGAGCGCGGAGTCTGTATGACATGGGCGTCTGGTCAATAACCAC
ACGCGATGAATACGTCAGCTTTCTTCAGTCAAAGAAAAATCTCTCAAAGG
CCTCCATTCATAGCTATTGTTGGCGGCTTGAAACGCTGTTTCGTGCCCTG
ATGACGGGCaagcaaaagcaagggaACTTAGATCGAGGCCAAATAAGACA
ATTAATCGAACATAAtttggaggaagcagagcgCCTTGTGGCTCAAGACG
ACCGCCGTAGCCATTGGTGCTTGCTTAAGGAATTTTTAGAGCTGCCATCT
GCTCCTTTATGCgcgggcgagagaggaagagatgagCAGCTGTTGGACAG
TGTacggggagtgggagaggacgaggtacGCTTTCCTGTCCATACTCTTG
AGAACGAGGCAAATAAGCACAAATCCATTTCACCGAATTCTTTTCGAAAG
AGAAATGGAATGATGGCAGCATCAAAAGGGAAGCACGAAAATAAGGTTTG
GGACATGGAGCTCAAGAAGGACTACAGGACTTGGCTGAGAGAGCGCGGCG
TGAAAGAGAGGACTTGCGGGTCATACTGCACATTCGTGCATAACCTTCTG
CGAGCATTAGCAGATGCACGGAAGCCAGTGCCATATAGGAGCCACCGGCA
GCAAACCACCACGATACCTATCACATTACTGCCTACATTCCCACAATCAC
GCTTGTCacacgaagaaggaaaagaagaaagaaaacgaGAACAACAGGAA
GAGCCCTCTGTATTAGCCATGCAAGACCAGGAGCACCATCAACAGCAAAT
ATCCTATCAGCAGCCTCGTGCTGGGCAGCGTGAATGTCTACATGAGGGGC
TACAAAGCGGTAACGCCATTTTATTGCTTGCTTCTCATGAAGACTCGGCA
ATTGGGGATGCATATTGTTATCGCGGCGACAGAAGTGGACAGGAGGCTTC
CGAAGACAATTTAAGAGTGGCAGAAGACAACGAAGTAGTCGCAATGGAGG
GCGGTGAAGCGGGGATTGTTGCGccccggcgggagggatTAAACAGAGGG
GAGCTGATCGAGCTACTGGATGAGCAACAAGAAGAGGCGCAACGCATTGT
TCGTCAGTCTAAGAAAAACCGCTATCTACGGTCATTTCGAGAATTTTTGG
GCATGAGTAACCATGACGATCACATCGTCAAAAATTCTAGGCAGTGGACA
GATCGAGTAGGAGGAGCTTATAAAAAGTGGATCGGAGCTGGGGGTGCGAA
TTGTCCACATGCCCGCACTCGAGGTTACGTTGGTGCAGCTCGAAGTATTC
TGCGGGTCATAAAACGGAAAGGATGGGTCCAAGAGGCGTTCGGAGGGCCT
CCGCTCACCAGCGCTGATATTTGCTTGGCCATTGAAGCCCATAAAGAGGA
ACTGCAACAGATTTGTGACAAGGCAGATGATGAATGCCTACAAGCATTTT
GCCGTTATTTGCGGCGACCGGAAAATAAGGGAgatggcgaagaagaggaa
gagaaggacttCCATTCTTCTCCGGCAGTCTCATCGCTTGGGATAGGAgc
cgaggacgatgaggctGCTGAAGATATGGGAGATCATAAAATTGGTACTA
ATCCCCCTACTGCAGTCAAGGGACTCCATGAACTGACATCGACGAAGGCA
TGTATTCATCGTCCTCTGAAGTCAGACGCGGGCATCGGGCACATGAATCG
TGTTGTTCAATCTTCAGAACACCCCGCAAGATGCGGGGCTGAAGAGGAGA
CTGTCGATAATCAGCAGCACGAATGGCCGATTTTTAATTCAGTGGGTCAC
AAAAGAAAGCGACCGGATACAACCAGGGAGCAAGGGATGGAACACCGTAT
CAGATCACTAACACTCGACCTAGAATGTAAGACACGAGAACGCAACGCGG
CACTCGCGCGCATACATGCGCTAGAGCTAGAGATACAGCATTTGCGAGAT
CGCTTTTTGAGTACATCAACTCCGCCTGTCTCGGCTGTACAAGAAGGACC
TACCGAATGTCAGCAACAACATACACGTGGTGTGGAGATGATTTTAAACC
ATCCCGGGGTCACAGAACAGGAAAATATAGGCGCACCGGGAGCTGCAATC
ACACACAGTGTACCAGGCCATACTTGTGGAGAACGTGAGGGAGGCATTTG
TGCAGATGATAGAGTGGTAGAAACGAACGCAAAGGATGAAGCTGTGTCCT
TCAGGAACAAGATGGGACGAGAAGGTGAGAGAGCAGAGGGTGATCCCGGC
TTTTTGTTGCTTGAAGCTGATGCACATTCTAATTGGCAACGTCGAGACCA
GTATGATCAGCTTCAGCGCCGACAGTCAGTTGCGCTACCACGCGCTGGGG
TTGACTTGACCGATGGAAAACcccaggaagaggacaagaggcAGCGCTGC
GTCTTCCGACACCACGTTCAGCACATCGAAGTACATGATCAACGGAACGC
TTGCGACCATCAGGACATGCACCTAGATGATGGAGAGGATCAGGACCATC
ATTTACGCATCGTGGGAGAACGAGAAACGGAAAATCTTCAGCATCTTCAT
GACGCTTCATTTGCATGCTCCCTCGGCCTTCGTGAgatgggagaagggaa
aggagatggggTGGAGAGCCGGGACTGTGTGGGTCATAATTCTCGCATGC
ACACCATTGCCACGCTGGGTCTTGCATCCGACATTACGGAAAGGGCAGGT
GTGGAAGAAAATCACACCATTCGTCAGGGATGGTAG

Synonyms

Publications