rna2477, rna2477 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2477
Unique Name	rna2477
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2188
Alignment location	CM002459.1:486410..488983 -

Link to JBrowse

Properties


Property Name	Value
Product	cdk5 regulatory subunit-associated protein 1
Orig transcript id	gnl\|cribi\|Naga_100004g119.9210.mrna
Orig protein id	gnl\|cribi\|Naga_100004g119.9210
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:486410..488983 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g119	gene2370	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28279.1	cds2469	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2477	rna2477-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:486410..488983-
coding sequence from alignment at CM002459.1:486410..488983-

mRNA sequence

>rna2477 ID=rna2477|Name=rna2477|organism=Nannochloropsis gaditana|type=mRNA|length=2188bp
ACAGATTGATAATGCGGTACAGTTTACGCGCTGTCGTAGACCAGGTTCTG
CAGGAGCGTGGAGGACGACCACTTGATCTTAGAATTCCTGTCGGTGGCCA
CAAGCTTACCTCTGGAGTCACAAAAGTGGCACGGAACGAACACCGTTTTC
CGTACTCGGCCGCTACCCCGGAGAACCCGGATGAGACTTTACCAAAAGAA
TCTTCAAGCAAGTCTTCCAATTTAGCTAAAAGTATTGTAAAGAATATCGA
ATGTGAAGGGGATGGGATTCGAAGAGAGCGGAAAGGAATTGGACAAAGCA
AAAGCAAGCGTCTGTTGGGAGTGAAAGACAAAAGGAAGAGCGAAAAGGGG
GGAGACGGCTCAGCGACTGATGCAAAGGCACCACGGGAGATGAAAGAATC
TACTGTAAGAGAAGCAGAGGAGCGTTGTTACCCTGAAGTATTGTGGATAC
CAATGGATCGACAAGAAACGAAAAGGAAGGGAAGGGGGGCACGTAGAGCA
TTGCCAGGGCCAGCAAGAGGCGCGAGTCATCAAGCGATCTCAAATCTCAA
GCGTTTGGGCGTCGACCCACCAGAAGAAGAAGTTGTAAGCGATGGCTATT
TGCGGCGTAGCCAGGGGGGGGAGTACGAGGACAAGTGTGGCTCACAGAGA
CCAGGGCGCGTACCTAAAAAGAAGGAGAAGGGGAGCGGGAGGCTGACAAG
AGCAGTGGCGGCCGTCGAGCAGGAGGGTGAATGCACGGCTTCGCGTTCTC
CAACGTCAAAAATAAGATTGAAAAAGTATGATAGACGGGAAATAGCGGGG
CGTCCGTCAGGAGTTGAACGGGTAGGACGACCGAGTCAAGCTGTCTCGAG
GAGAGCACCCGGGCAAAGGGGCAGGACCAGGGAAGGGATCTGTGGAGAGG
CGATGTCAGTAAAAGCGGAAGCTAACCGGAAGCGCACAGAATTTTGGAAG
GAAAAAACGACGTCGGAGAAAAAAGAGCAGGTGATTGTGGAGGAGGAGGA
GGAGAAGAAGAAGAAGAAGGAGGAGGAGAAGGAGGAGGAGAAGGAGGTGG
AGGGAAAGGTGATAGAATTAGGGGAAGAATTGCAAGAGAAAAGAGAGAGG
CAAAGAATCAGGTTGAAATTTGGAGTGGATGACGCCGAGCATGAAGAGGA
AGAGGAGGAAGCGGTGATGATAGGCGAGGAGGAAGTTCAGGGAGGTCGCG
GGAGTGACGATGCGTTGTCCCTCGACGAAGAGCCGCTGAGAGAGGGAAAG
GAAAATGACCTGTATGAGCAGATATCTTATTTGGAGTCTCAGGTGGCAGC
CATGGAGCGATTGGTGAGGCGCGAGCACCTGCGTGTCGCGGAGGAAGGCG
AAGGCGACGAGAGCGACAGACTGCGCCGATCTGAGCGAGCCTTGGAGGCC
AGGCGGGGACCCGCGATGGGTAGAGAAAGAGGAGGTCCCGCCACACGACG
GTGTTCCGTCTACTTGCCCTCCCTGTCGTCGTCCCCGTCCTCCGAGGACG
AGGACGAGCGGGAGGAAGTGGTGGGAGGCTTGGGGAGGGACGCGGGGCAG
TGGGGGGCTTGTTCGGGCTCTTTGAGGGACTTAGAGGCCCGTCTATCAAA
GATGGAAATCAACGTTCTAGAGATTCATTCACAAATGCAGGGGCGAGGGG
GTGATGGTGCCACTTGTGGGTCTCAGCCTTCCTATGAAGGCAAGATACTT
TCATCAGGAAACGAAGCGGACGGAGTTCTTCAAGAAAGGGAGATGCCGGA
AGCGGCACTTGCGGAGGCGACCAAGCTCTGGACTACCCGAGATGGCTGTG
ACACCATACAGTCCTTGCTTACGCAGTTGCAAGAAATACAAGACGAATGC
TCCGATTCCAACTTTCTGGCGTCCTCGAATGGCGGCGCATGGGTGGACAG
AGAGCAGCTAGCTAATGGCCTCAATCATCACCCGGCGGGGCGGGAGGAGG
TTAAATTTGCTGCCTCCAGACCTTCACACGGCTCTGAGGGTACAAGTCGT
GACGCCAAGAATATCATTTTACGAGAACAGCAATTGGATGCTCTGGAAGC
TCGCCTAGCAGCCATTACCTCCAAAATACGAAGCGAGATACCACTCTAAA
AGCGATGTTCAAGATGCCCGTCATCTCGCCCCCGAAGTCTCTATGCGGAT
GGTCAAATGAAAGGAAAAAGCAAAGTTTGTCCTTTTCA

protein sequence of rna2477

>rna2477-protein ID=rna2477-protein|Name=rna2477|organism=Nannochloropsis gaditana|type=polypeptide|length=628bp
MPPRGAPGVRTLFLCRASREYWRASNHCRRYSSSISKVTSQARRLPVDDE
RTLKDFLSGSRGKEGVGLATAHLQISQMSVADASTSSNNFSQPFAVNPEP
KTFTIESYGCQQNVADSEVVRAIMEGANFKWVEGGRIDGHYSGCDIIFLN
TCAIRDNAEKRIWGRLNHLKHPVRRSPGTGPLPGRRQARRDGRNKKPIIG
LLGCMAERLKARLLEEEAVDLVVGPDAYRDLPRLLDIVEAGERGVNVQLS
MDETYAEIKPARISPDQCSAFVSIMRGCNNMCSYCIVPHTRGRERSRPLR
TVVEEVRRLADEGVKEVVLLGQNVNSFHDTSTVVLNGGGKYEAAEGFSNL
YKSRHEAGARFIDLLDAVSRVDKDMRVRFTSPHPKDFPLPLLQLISERPS
LCKALHLPAQSGSSAVLQRMRRGYTREAYLSLVQRIREIIPGVALSSDFI
AGFCGETEEEHQQTLSLLRLVGYDHAFLFSYSLRERTHAAYHFEDDVPES
EKQRRLSEVISTFRSIVEKRNRAEIGREHLVLVEGPSKRSTPEKPTLTGR
TDTNKRCILPAREVPVSVGEEGKPLVSLQPGDYAWVRVTDAKAQTLFCDE
ILGRSNIQEFATDIQRTERLPRIQKVQV

mRNA from alignment at CM002459.1:486410..488983-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2477 ID=rna2477|Name=rna2477|organism=Nannochloropsis gaditana|type=mRNA|length=2574bp|location=Sequence derived from alignment at CM002459.1:486410..488983- (Nannochloropsis gaditana)
CCGCTGTTGAACGGCCTCAGCTACAATCCTTCACGCACTATGTTTCTCCA
AGCGTACCACGACGTACACGACAGCATCTGTCCTCAGTGGCAACACACTT
CGTCAGGGAATTGTTTTTGCACTCCTTGTCACATTGCTATTCACATCTGC
TTTTCAACCTTCTTGCTTCGCGTGCAACGCGCCCTTCGCGTGTCAACTTC
AGTTGCTAGTCCTCGAGGGGGCTTCTTCTTACGAAGGCCGGTCAGTTCCA
AGCTGTCAAAGCTAGTCGAGATAATTGACCTTCTACACTTGCTTGATAGT
CGAGCAGCATGGCGGCTTGGTTCTCATGTGGATTAACGTGCCATTGGCAT
GACAGCTTGGGCAATGGCCCTGAGTACTGCCTGACAGAGCAGATACAGCT
CAGCTTACGAAGTCTTCCCTGCAACGCTCACGTATTCAATAAGATGAAGT
CTTTCGACAAGGACAATACTAACACAATCTTATTTTCTGGATGTGTGTCT
CTTAGTGCCTTTTTCGCCCCAGAGGCTCTCTGTCATGCCTCCACGAGGAG
CGCCAGGAGTCAGGACACTTTTCCTTTGCAGGGCCAGCAGGGAATATTGG
CGCGCCAGCAATCATTGCAGGAGGTATAGCTCGAGTATATCAAAGGTAAC
ATCGCAGGCGCGGCGATTGCCCGTCGATGATGAACGTACCTTGAAAGATT
TTCTGTCAGGATCACGGGGAAAAGAGGGCGTAGGGCTTGCTACGGCCCAC
TTGCAAATCAGCCAAATGAGTGTAGCCGATGCGTCAACATCTTCCAACAA
TTTTTCGCAGCCATTTGCTGTCAATCCTGAACCCAAAACCTTTACAATTG
AAAGCTACGGCTGCCAACAGAACGTTGCGGATTCTGAAGTGGTGCGAGCC
ATCATGGAGGGAGCTAACTTCAAGTGGGTCGAAGGGGGAAGAATTGATGG
TCATTACAGCGGATGCGACATCATATTTCTCAACACTTGTGCTATACGGG
ATAATGCGGAGAAGCGTATCTGGGGTCGACTCAACCATTTAAAGCATCCA
GTACGCCGGTCACCAGGCACCGGTCCTTTGCCAGGTCGGCGACAGGCACG
ACGAGACGGGCGAAACAAAAAGCCCATCATCGGATTGCTTGGCTGCATGG
CTGAGAGGCTGAAGGCCAGGCTTTTGGAAGAGGAGGCGGTGGACTTGGTG
GTGGGTCCAGACGCTTACAGGGACTTGCCCCGACTCTTGGACATTGTGGA
GGCTGGCGAGAGGGGGGTCAATGTCCAGCTGTCCATGGATGAGACTTACG
CGGAAATCAAGCCTGCGCGAATAAGCCCTGATCAATGCAGCGCCTTCGTC
TCGATCATGCGTGGATGCAACAACATGTGCTCATACTGCATTGTCCCTCA
CACGCGGGGTCGCGAGCGCTCTCGGCCGCTGAGGACAGTGGTGGAAGAAG
TGCGGCGCTTGGCGGACGAGGGGGTGAAAGAGGTGGTACTTCTCGGGCAG
AACGTCAACTCTTTTCACGATACTTCTACCGTCGTACTCAATGGTGGAGG
AAAGTATGAGGCTGCAGAAGGATTTTCAAACCTTTATAAAAGCCGGCACG
AGGCCGGCGCACGGTTCATCGACCTTTTGGATGCCGTCTCGCGGGTGGAT
AAGGACATGCGGGTACGATTTACATCGCCGCATCCCAAAGACTTCCCTCT
GCCCCTGCTGCAGCTCATCTCCGAGCGACCCTCACTGTGCAAGGCCCTGC
ACTTGCCTGCACAGAGTGGGAGCAGCGCTGTATTGCAGCGGATGCGGCGG
GGTTACACGCGGGAAGCATACCTGTCGTTAGTGCAGAGGATCAGAGAAAT
TATTCCTGGGGTAGCTCTGTCGTCCGATTTTATCGCGGGCTTCTGTGGAG
AGACTGAAGAGGAGCATCAACAGACATTGAGCTTGCTCAGATTGGTCGGA
TACGATCATGCATTTCTCTTCTCCTATTCCCTGCGGGAGCGCACTCACGC
AGCTTATCATTTTGAGGATGATGTGCCCGAATCAGAAAAACAACGGCGCC
TTTCCGAGGTTATCTCTACGTTTCGCAGCATCGTAGAAAAACGCAACCGC
GCTGAGATTGGGAGAGAGCACTTGGTGTTGGTCGAGGGTCCCAGCAAGCG
TTCAACGCCTGAAAAGCCTACGTTAACGGGCCGGACTGATACGAACAAGC
GATGCATTCTTCCAGCTCGAGAGGTTCCCGTCAGCGTTGGGGAGGAAGGC
AAGCCCCTGGTGAGCTTGCAACCAGGAGACTACGCCTGGGTACGTGTCAC
CGACGCCAAAGCGCAGACGCTTTTCTGTGACGAGATTTTGGGCCGCAGTA
ACATACAAGAATTTGCGACCGATATTCAAAGGACTGAAAGACTCCCTCGG
ATCCAAAAAGTACAAGTGTGAAGTGCGCGGTGGAAATCCTGATGGAGAAG
AATTTTGTGTGTAGGAACGACGGGGGTCGAATTTCGTGGACGGATAAAAA
AGGCTATGCGGGTAACTCCACACATTTCTTTGAACGTTTTTTCCAAAATT
GAGAACGTAATCTGCTTTGGTTAT

Coding sequence (CDS) from alignment at CM002459.1:486410..488983-

>rna2477 ID=rna2477|Name=rna2477|organism=Nannochloropsis gaditana|type=CDS|length=1887bp|location=Sequence derived from alignment at CM002459.1:486410..488983- (Nannochloropsis gaditana)
ATGCCTCCACGAGGAGCGCCAGGAGTCAGGACACTTTTCCTTTGCAGGGC
CAGCAGGGAATATTGGCGCGCCAGCAATCATTGCAGGAGGTATAGCTCGA
GTATATCAAAGGTAACATCGCAGGCGCGGCGATTGCCCGTCGATGATGAA
CGTACCTTGAAAGATTTTCTGTCAGGATCACGGGGAAAAGAGGGCGTAGG
GCTTGCTACGGCCCACTTGCAAATCAGCCAAATGAGTGTAGCCGATGCGT
CAACATCTTCCAACAATTTTTCGCAGCCATTTGCTGTCAATCCTGAACCC
AAAACCTTTACAATTGAAAGCTACGGCTGCCAACAGAACGTTGCGGATTC
TGAAGTGGTGCGAGCCATCATGGAGGGAGCTAACTTCAAGTGGGTCGAAG
GGGGAAGAATTGATGGTCATTACAGCGGATGCGACATCATATTTCTCAAC
ACTTGTGCTATACGGGATAATGCGGAGAAGCGTATCTGGGGTCGACTCAA
CCATTTAAAGCATCCAGTACGCCGGTCACCAGGCACCGGTCCTTTGCCAG
GTCGGCGACAGGCACGACGAGACGGGCGAAACAAAAAGCCCATCATCGGA
TTGCTTGGCTGCATGGCTGAGAGGCTGAAGGCCAGGCTTTTGGAAGAGGA
GGCGGTGGACTTGGTGGTGGGTCCAGACGCTTACAGGGACTTGCCCCGAC
TCTTGGACATTGTGGAGGCTGGCGAGAGGGGGGTCAATGTCCAGCTGTCC
ATGGATGAGACTTACGCGGAAATCAAGCCTGCGCGAATAAGCCCTGATCA
ATGCAGCGCCTTCGTCTCGATCATGCGTGGATGCAACAACATGTGCTCAT
ACTGCATTGTCCCTCACACGCGGGGTCGCGAGCGCTCTCGGCCGCTGAGG
ACAGTGGTGGAAGAAGTGCGGCGCTTGGCGGACGAGGGGGTGAAAGAGGT
GGTACTTCTCGGGCAGAACGTCAACTCTTTTCACGATACTTCTACCGTCG
TACTCAATGGTGGAGGAAAGTATGAGGCTGCAGAAGGATTTTCAAACCTT
TATAAAAGCCGGCACGAGGCCGGCGCACGGTTCATCGACCTTTTGGATGC
CGTCTCGCGGGTGGATAAGGACATGCGGGTACGATTTACATCGCCGCATC
CCAAAGACTTCCCTCTGCCCCTGCTGCAGCTCATCTCCGAGCGACCCTCA
CTGTGCAAGGCCCTGCACTTGCCTGCACAGAGTGGGAGCAGCGCTGTATT
GCAGCGGATGCGGCGGGGTTACACGCGGGAAGCATACCTGTCGTTAGTGC
AGAGGATCAGAGAAATTATTCCTGGGGTAGCTCTGTCGTCCGATTTTATC
GCGGGCTTCTGTGGAGAGACTGAAGAGGAGCATCAACAGACATTGAGCTT
GCTCAGATTGGTCGGATACGATCATGCATTTCTCTTCTCCTATTCCCTGC
GGGAGCGCACTCACGCAGCTTATCATTTTGAGGATGATGTGCCCGAATCA
GAAAAACAACGGCGCCTTTCCGAGGTTATCTCTACGTTTCGCAGCATCGT
AGAAAAACGCAACCGCGCTGAGATTGGGAGAGAGCACTTGGTGTTGGTCG
AGGGTCCCAGCAAGCGTTCAACGCCTGAAAAGCCTACGTTAACGGGCCGG
ACTGATACGAACAAGCGATGCATTCTTCCAGCTCGAGAGGTTCCCGTCAG
CGTTGGGGAGGAAGGCAAGCCCCTGGTGAGCTTGCAACCAGGAGACTACG
CCTGGGTACGTGTCACCGACGCCAAAGCGCAGACGCTTTTCTGTGACGAG
ATTTTGGGCCGCAGTAACATACAAGAATTTGCGACCGATATTCAAAGGAC
TGAAAGACTCCCTCGGATCCAAAAAGTACAAGTGTGA

Synonyms

Publications