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Properties
| Property Name | Value |
|---|
| Product | ddb1 and cul4-associated factor 7 |
| Orig transcript id | gnl|cribi|Naga_100004g117.9189.mrna |
| Orig protein id | gnl|cribi|Naga_100004g117.9189 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:478318..480915 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2475 ID=rna2475|Name=rna2475|organism=Nannochloropsis gaditana|type=mRNA|length=1305bp
ATGCCATACTGCCCTTCGGTCCAATCCTCCGACACACTGTGCTTCCTGGG
CGTAGGCATGAAGGGTGACGACGTCGCGAGGAGCGAGTGGGAGACGCGTT
TTCGGTCACTTTTTTCGACAGACGCGGCTATCATTGCTGTTCAAATTCTT
CCTGGGAAAACATATATGACATTTGATTCCATCAAAACAGCAGAAAAGGT
CAGGCAGGAGTGGCAGGGTCGAGTGCTTCCACGTCGACTTTCCCGTCATC
CAGTCACAGTCCTGTTCGGGCGAGCGTATGAGGCCAAAATTAATCCCGAG
CCTGAAAATGTCATTGTGGATCCTCTCGCAGACACCCTAACTCCTGCTAC
ATGTCTTCCTAAAGGGCTACAGCTTTTCATGTTTCTGAACGAAGCAGAGG
AATCATCGCTACTAACCCTGCTTGACTCAAAGCAATGGGACAAGTCTGGT
GTAACTCGGCGGACGCAGCACTATGGCGCGGCGGCTATCGATTTTCGATC
TAAAAGCCTTGACACAAGGCGACCTACCGTTCCAATTCCCATCCAATGTC
GAGACTTGCTGGCGCGTGCACGGCGACAGCAACAGGCGTGCGGCGTTGCC
TGGCCGAGCGGGCCACTCGCCGATACGGACGCTTCCTGCCTCGGCCGTGA
TCAGATGACTGTCAATGAATACCAACCAGGAGACGGCATTGCGGCCCATA
TAGATGCACATTCCTTATTCGAGGATGGACTGCTGATCATGTCGTTGGGA
AGTGCTTACGTCATGGACTTCAGGGAACAAAGGCATAACGATCTTCAGGA
CGGGGAAGCGGGCCCCCGATGCTCCTTGCTGCTTCCTCGGAGGTCTTTGC
TTGTGCTGCAGGGGGAAGCTCGCTATAATTGGACCCATGGACTAGCTAGT
CGCAAGACAGACAAAGTGAATGGCCGACTTGTCTCACGTGGGCGTAGGGT
CTCGCTGAGCTTCCGGCGGTTGCGGAATGGCAATCCGCCCCTTTGCGAGT
GTCTCTTCCCCGCCTCATGCGACAAAAGGATACCGGGAAACTCGCCTTTT
CCCTTCATTTTCAGCACCAACCACGTATGTAGAGTGGAGGGCTTGGAAAC
CGTGAGAGACAGGATCGCAGCAAACATTGCGTACGGCGCTGCGACAAATA
ATGACAGGAGAGAAACATTCGAAGTGTTCATAACGTCCATCTTGGTAGTC
TCTCACTTGCTGCTGCTGCCCTTTCAGCCGACACTTTGCATCCTTTCCCT
TCATTTGCGCGACCTCGACATACCGATGATGAAAGCTCGCTGCTTCATTC
ATTGA back to topprotein sequence of rna2475 >rna2475-protein ID=rna2475-protein|Name=rna2475|organism=Nannochloropsis gaditana|type=polypeptide|length=388bp
MVLEPSSDNPLDIISHSIRSLRVRRGNYRATSSTEPGSLYPPQTSMGDDA
NESKKEIYNYETSWLIFAMAWNQRTDMSNRFRIALGSYIEEYNNKIRIIE
RIHSSTSSANGDGSLQRVMEFDHPYPATKIMWCPDREPVSPQRDLLATTG
DYLRIWNVNSGEAKLEALLNNNKNSEFCAPLTSFDWNKDDPSLLGTACID
TTCTIWDVNAQQAKTQIIAHDKEVYDIAFARGKDLFASVGADGSVRMFDL
RSLVHSTIIYESPDLVPLLRLAWNRQDPNYLATIMADSTKTYLLDIRKPS
STVAELGEHQGAVNSLSWAPHSACHICTCGEDRQALIWDLSALPGPIESP
ILAYTAQAEINSLEWFQQSPERNWVGIGFDNRLQVLRV back to topmRNA from alignment at CM002459.1:478318..480915+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2475 ID=rna2475|Name=rna2475|organism=Nannochloropsis gaditana|type=mRNA|length=2598bp|location=Sequence derived from alignment at CM002459.1:478318..480915+ (Nannochloropsis gaditana)
AGGGGCAAGCGTTGTCGATGGTTCTAGAGCCTTCGTCTGACAACCCTCTG
GATATCATTTCGCACAGCATCCGCAGCCTGCGAGTCCGTCGCGGGAACTA
CCGAGCGACGTCTTCAACAGAGCCCGGGTCTCTTTACCCACCTCAGACAA
GCATGGGAGACGACGCGAACGAAAGCAAAAAAGAAGTAAGTAAATCATTT
AGTCTCTCAGATGGTATGTAGATTGATTAAATACCAGGGTGGGTGCGAAT
ATCAAAGACATCTTTCCAGCCTCCGGACAGTCATGTCAAGTTAGAGGACC
TTCCCGTAAAATATCTCGCTACATTTCGAAGGTGAAACACGCATCGGACG
AGTATGATGTTGTTTTTGTGAAAAATTACTATCACGAAAGGGCTCTGGGC
CAATGCGTTTTGTGGCGGTTCATGCGACTTTGGTGATGTTGGGGTATACG
GCCTCAGGACAAGAGTCGTCTTCGGGCTTTATCACTGACAATTAACTCAG
CGGTGTAAAGCTTCTTTTCGGACGTACCTAATTAAACGCCATTTGTCTTA
TTCAATGTCTACTAGATCTACAATTACGAGACGAGCTGGCTCATCTTTGC
AATGGCCTGGAACCAGCGCACCGACATGTCAAATCGTTTCAGGATCGCAC
TTGGCTCATACATCGAGGAATATAACAATAAAATTCGCATTATTGAGCGC
ATCCACTCCTCTACCTCGAGCGCAAACGGAGACGGAAGTCTTCAGAGGGT
AATGGAATTCGACCATCCTTATCCTGCTACCAAGATCATGTGGTGCCCCG
ATAGAGAGCCTGTGAGCCCTCAGCGGGATCTTCTGGCGACAACAGGCGAC
TACTTGCGAATATGGAATGTCAATTCAGGAGAAGCGAAATTGGAGGCGTT
GTTGAACAATGTGAGAAAATTAGGAAAAGGAGACGGAACATGAAGAGGCT
GGAAGGAACCGTCGATGGACGCCGAACGCCTGTTGTCACTTTTTAAGCGA
ACGTCACACTCATGTTCACAACTTGCTTTCCCCACTatcgcttcctcttg
tcgCTGGATACAGAATAAAAACAGTGAATTTTGCGCGCCTCTTACCTCCT
TCGATTGGAACAAAGACGACCCTTCCCTACTAGGTACGGCCTGCATTGAC
ACGACTTGCACGATTTGGGATGTGAACGCGCAGCAGGCAAAAACTCAGAT
AATAGCCCACGACAAAGAGGTCTACGATATCGGTGAGGCAGAGAATTGGA
GGGGTATCTTGTTACAATACCATCGAGGAAGGTCATTTGAGAAGGGCTAT
TGGGGACTGTCCATGATCGCCGCCAGGCAACAGTCGGTGGCTTGGCGCTG
TTTGATCGCCATCCACTGATTACTTCAACCTATTTTGCGTATCCCCTCAT
CGTAGCTTTCGCTCGCGGTAAGGATCTTTTCGCTTCTGTGGGTGCTGACG
GTTCTGTGCGCATGTTCGATTTGCGCTCTCTTGTTCACTCCACCATTATA
TACGAGTCGCCCGACCTGGTGCCTCTGCTCCGTCTCGCGTGGAACCGACA
AGATCCCAACTATTTGGCCACCATCATGGCAGACAGCACCAAGACATATC
TACTGGACATCCGGAAGCCGTCCTCGACTGTCGCGGAACTCGGCGAGCAC
CAGGGTGCTGTAAATTCCTTGTCCTGGGCACCACATTCTGCTTGTCATAT
TTGCACCTGTGGTGAGGATAGACAAGCATTGATCTGGGATTTGTCTGCTC
TTCCAGGTCCTATAGAAAGCCCAATCTTGGCGTATACAGCCCAGGCGGAG
ATAAATAGTTTAGAGTGGTTCCAGCAAAGCCCCGAGAGAAATTGGGTCGG
AATTGGTTTCGATAACCGGTTGCAGGTTTTGAGGGTTTAACGGACTGTGA
TGGCATGTTGTATAGTCGTAGATGAGATTGCACTTGTAGTGTGCTTACTG
TGATTGCTTTGCAGCCGTGTGTGCCCGCACGGTGGGGTTGGAAGGGATGG
CATTGCAGCAAATGGGAAATGTGTATGCTGTCAAAACGCTCATCCACAAC
CGGATTTATCGCTGCATGCCGACGCTCGTGGAACAATGTGGTAAGCAGGA
TTCCGAATCCGAAAGGATAGCACGCCGTGTGCAGTGATTTTATTCATGTG
AAGCGATGTCGACAAAGAACAATGCGGCGCGATCGATTTACTATCTGTGA
AAGCATGCGCCTCGGTCTGCTTTCTCCAGCATTTTTGTAACGCTTTATTC
CCCGTAGACAAGCTTAACATGTGACCGTATAAATTGTCTGCCACGCGTGA
CATAAATGAGCCGGTTACAAGGTATGAGAGAAGGCAAGCCTTCTTATCAG
CCTCTATTTGAAGTCACGAAAAACAAAGCTTCCTCAGCTGCCAGTCAATT
CTCTTTTCGGAAACATGTACAGAAACTCGTGAGCTcgcgtccttcttcct
cagtCTTAACTGACTTCGAGATATGGCTACCTATCCATGACAAGCCTGGC
CTCTCTTGATGAATCACTTCAATgacttcatttttttcctatACAAAGGC
TTTGCTGATTGCTCGATGTATGAAGCAATTGCACCTTCCCATATTCTT back to topCoding sequence (CDS) from alignment at CM002459.1:478318..480915+ >rna2475 ID=rna2475|Name=rna2475|organism=Nannochloropsis gaditana|type=CDS|length=4668bp|location=Sequence derived from alignment at CM002459.1:478318..480915+ (Nannochloropsis gaditana)
ATGGTTCTAGAGCCTTCGTCTGACAACCCTCTGGATATCATTTCGCACAG
CATCCGCAGCCTGCGAGTCCGTCGCGGGAACTACCGAGCGACGTCTTCAA
CAGAGCCCGGGTCTCTTTACCCACCTCAGACAAGCATGGGAGACGACGCG
AACGAAAGCAAAAAAGAAATCTACAATTACGAGACGAGCTGGCTCATCTT
TGCAATGGCCTGGAACCAGCGCACCGACATGTCAAATCGTTTCAGGATCG
CACTTGGCTCATACATCGAGGAATATAACAATAAAATTCGCATTATTGAG
CGCATCCACTCCTCTACCTCGAGCGCAAACGGAGACGGAAGTCTTCAGAG
GGTAATGGAATTCGACCATCCTTATCCTGCTACCAAGATCATGTGGTGCC
CCGATAGAGAGCCTGTGAGCCCTCAGCGGGATCTTCTGGCGACAACAGGC
GACTACTTGCGAATATGGAATGTCAATTCAGGAGAAGCGAAATTGGAGGC
GTTGTTGAACAATAATAAAAACAGTGAATTTTGCGCGCCTCTTACCTCCT
TCGATTGGAACAAAGACGACCCTTCCCTACTAGGTACGGCCTGCATTGAC
ACGACTTGCACGATTTGGGATGTGAACGCGCAGCAGGCAAAAACTCAGAT
AATAGCCCACGACAAAGAGGTCTACGATATCGCTTTCGCTCGCGGTAAGG
ATCTTTTCGCTTCTGTGGGTGCTGACGGTTCTGTGCGCATGTTCGATTTG
CGCTCTCTTGTTCACTCCACCATTATATACGAGTCGCCCGACCTGGTGCC
TCTGCTCCGTCTCGCGTGGAACCGACAAGATCCCAACTATTTGGCCACCA
TCATGGCAGACAGCACCAAGACATATCTACTGGACATCCGGAAGCCGTCC
TCGACTGTCGCGGAACTCGGCGAGCACCAGGGTGCTGTAAATTCCTTGTC
CTGGGCACCACATTCTGCTTGTCATATTTGCACCTGTGGTGAGGATAGAC
AAGCATTGATCTGGGATTTGTCTGCTCTTCCAGGTCCTATAGAAAGCCCA
ATCTTGGCGTATACAGCCCAGGCGGAGATAAATAGTTTAGAGTGGTTCCA
GCAAAGCCCCGAGAGAAATTGGGTCGGAATTGGTTTCGATAACCGGTTGC
AGGTTTTGAGGGTTTAAATGGTTCTAGAGCCTTCGTCTGACAACCCTCTG
GATATCATTTCGCACAGCATCCGCAGCCTGCGAGTCCGTCGCGGGAACTA
CCGAGCGACGTCTTCAACAGAGCCCGGGTCTCTTTACCCACCTCAGACAA
GCATGGGAGACGACGCGAACGAAAGCAAAAAAGAAATCTACAATTACGAG
ACGAGCTGGCTCATCTTTGCAATGGCCTGGAACCAGCGCACCGACATGTC
AAATCGTTTCAGGATCGCACTTGGCTCATACATCGAGGAATATAACAATA
AAATTCGCATTATTGAGCGCATCCACTCCTCTACCTCGAGCGCAAACGGA
GACGGAAGTCTTCAGAGGGTAATGGAATTCGACCATCCTTATCCTGCTAC
CAAGATCATGTGGTGCCCCGATAGAGAGCCTGTGAGCCCTCAGCGGGATC
TTCTGGCGACAACAGGCGACTACTTGCGAATATGGAATGTCAATTCAGGA
GAAGCGAAATTGGAGGCGTTGTTGAACAATAATAAAAACAGTGAATTTTG
CGCGCCTCTTACCTCCTTCGATTGGAACAAAGACGACCCTTCCCTACTAG
GTACGGCCTGCATTGACACGACTTGCACGATTTGGGATGTGAACGCGCAG
CAGGCAAAAACTCAGATAATAGCCCACGACAAAGAGGTCTACGATATCGC
TTTCGCTCGCGGTAAGGATCTTTTCGCTTCTGTGGGTGCTGACGGTTCTG
TGCGCATGTTCGATTTGCGCTCTCTTGTTCACTCCACCATTATATACGAG
TCGCCCGACCTGGTGCCTCTGCTCCGTCTCGCGTGGAACCGACAAGATCC
CAACTATTTGGCCACCATCATGGCAGACAGCACCAAGACATATCTACTGG
ACATCCGGAAGCCGTCCTCGACTGTCGCGGAACTCGGCGAGCACCAGGGT
GCTGTAAATTCCTTGTCCTGGGCACCACATTCTGCTTGTCATATTTGCAC
CTGTGGTGAGGATAGACAAGCATTGATCTGGGATTTGTCTGCTCTTCCAG
GTCCTATAGAAAGCCCAATCTTGGCGTATACAGCCCAGGCGGAGATAAAT
AGTTTAGAGTGGTTCCAGCAAAGCCCCGAGAGAAATTGGGTCGGAATTGG
TTTCGATAACCGGTTGCAGGTTTTGAGGGTTTAAATGGTTCTAGAGCCTT
CGTCTGACAACCCTCTGGATATCATTTCGCACAGCATCCGCAGCCTGCGA
GTCCGTCGCGGGAACTACCGAGCGACGTCTTCAACAGAGCCCGGGTCTCT
TTACCCACCTCAGACAAGCATGGGAGACGACGCGAACGAAAGCAAAAAAG
AAATCTACAATTACGAGACGAGCTGGCTCATCTTTGCAATGGCCTGGAAC
CAGCGCACCGACATGTCAAATCGTTTCAGGATCGCACTTGGCTCATACAT
CGAGGAATATAACAATAAAATTCGCATTATTGAGCGCATCCACTCCTCTA
CCTCGAGCGCAAACGGAGACGGAAGTCTTCAGAGGGTAATGGAATTCGAC
CATCCTTATCCTGCTACCAAGATCATGTGGTGCCCCGATAGAGAGCCTGT
GAGCCCTCAGCGGGATCTTCTGGCGACAACAGGCGACTACTTGCGAATAT
GGAATGTCAATTCAGGAGAAGCGAAATTGGAGGCGTTGTTGAACAATAAT
AAAAACAGTGAATTTTGCGCGCCTCTTACCTCCTTCGATTGGAACAAAGA
CGACCCTTCCCTACTAGGTACGGCCTGCATTGACACGACTTGCACGATTT
GGGATGTGAACGCGCAGCAGGCAAAAACTCAGATAATAGCCCACGACAAA
GAGGTCTACGATATCGCTTTCGCTCGCGGTAAGGATCTTTTCGCTTCTGT
GGGTGCTGACGGTTCTGTGCGCATGTTCGATTTGCGCTCTCTTGTTCACT
CCACCATTATATACGAGTCGCCCGACCTGGTGCCTCTGCTCCGTCTCGCG
TGGAACCGACAAGATCCCAACTATTTGGCCACCATCATGGCAGACAGCAC
CAAGACATATCTACTGGACATCCGGAAGCCGTCCTCGACTGTCGCGGAAC
TCGGCGAGCACCAGGGTGCTGTAAATTCCTTGTCCTGGGCACCACATTCT
GCTTGTCATATTTGCACCTGTGGTGAGGATAGACAAGCATTGATCTGGGA
TTTGTCTGCTCTTCCAGGTCCTATAGAAAGCCCAATCTTGGCGTATACAG
CCCAGGCGGAGATAAATAGTTTAGAGTGGTTCCAGCAAAGCCCCGAGAGA
AATTGGGTCGGAATTGGTTTCGATAACCGGTTGCAGGTTTTGAGGGTTTA
AATGGTTCTAGAGCCTTCGTCTGACAACCCTCTGGATATCATTTCGCACA
GCATCCGCAGCCTGCGAGTCCGTCGCGGGAACTACCGAGCGACGTCTTCA
ACAGAGCCCGGGTCTCTTTACCCACCTCAGACAAGCATGGGAGACGACGC
GAACGAAAGCAAAAAAGAAATCTACAATTACGAGACGAGCTGGCTCATCT
TTGCAATGGCCTGGAACCAGCGCACCGACATGTCAAATCGTTTCAGGATC
GCACTTGGCTCATACATCGAGGAATATAACAATAAAATTCGCATTATTGA
GCGCATCCACTCCTCTACCTCGAGCGCAAACGGAGACGGAAGTCTTCAGA
GGGTAATGGAATTCGACCATCCTTATCCTGCTACCAAGATCATGTGGTGC
CCCGATAGAGAGCCTGTGAGCCCTCAGCGGGATCTTCTGGCGACAACAGG
CGACTACTTGCGAATATGGAATGTCAATTCAGGAGAAGCGAAATTGGAGG
CGTTGTTGAACAATAATAAAAACAGTGAATTTTGCGCGCCTCTTACCTCC
TTCGATTGGAACAAAGACGACCCTTCCCTACTAGGTACGGCCTGCATTGA
CACGACTTGCACGATTTGGGATGTGAACGCGCAGCAGGCAAAAACTCAGA
TAATAGCCCACGACAAAGAGGTCTACGATATCGCTTTCGCTCGCGGTAAG
GATCTTTTCGCTTCTGTGGGTGCTGACGGTTCTGTGCGCATGTTCGATTT
GCGCTCTCTTGTTCACTCCACCATTATATACGAGTCGCCCGACCTGGTGC
CTCTGCTCCGTCTCGCGTGGAACCGACAAGATCCCAACTATTTGGCCACC
ATCATGGCAGACAGCACCAAGACATATCTACTGGACATCCGGAAGCCGTC
CTCGACTGTCGCGGAACTCGGCGAGCACCAGGGTGCTGTAAATTCCTTGT
CCTGGGCACCACATTCTGCTTGTCATATTTGCACCTGTGGTGAGGATAGA
CAAGCATTGATCTGGGATTTGTCTGCTCTTCCAGGTCCTATAGAAAGCCC
AATCTTGGCGTATACAGCCCAGGCGGAGATAAATAGTTTAGAGTGGTTCC
AGCAAAGCCCCGAGAGAAATTGGGTCGGAATTGGTTTCGATAACCGGTTG
CAGGTTTTGAGGGTTTAA back to top
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