rna2470, rna2470 (mRNA) Nannochloropsis gaditana

Overview
Namerna2470
Unique Namerna2470
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length486
Alignment locationCM002459.1:466781..468473 +

Link to JBrowse

Properties
Property NameValue
Productthioredoxin f
Orig transcript idgnl|cribi|Naga_100004g111.9237.mrna
Orig protein idgnl|cribi|Naga_100004g111.9237
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:466781..468473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g111gene2363Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2470rna2470-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28306.1cds2462Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2470 ID=rna2470|Name=rna2470|organism=Nannochloropsis gaditana|type=mRNA|length=486bp
ATGGAGAGATGCATGAGGACGAGGCCGCATGTGAGCGGTGTTGCACGTGT
GCACAAAAACCGGACCCACGGTATCACATCGTCCTCATGTTTTTTTAAAC
GCGTACAATTTCAAGTTGTTTCACCCAGCAGGAAAAACCACGTACTAGCC
AGACCTCCCCCACTCCATCCACTACCTAGTCAGACAGACATGTCCCTCCG
CAAGCTTATTCCTCTCGCCGACCGCATCCTTGTGCAGCGCATCTTGCCAA
AGACCCAGACAGCTGGCGGGGTCTTCCTCCCGGAGACCAAATTAGACAAG
CCGAATGAAGGCAAAGTCATTGCGGTTGGTGCAGGTGGACGCAAGGCAGA
CGGAACGCTGATCCCCCCCAGCGTTAAGGAGGGGGACACAGTGCTTCTGC
CTGAGTATGGCGGCCACACAGTGAAATTGGGGGATGAAGAGTACCAGCTG
TTTAGGGACGAGGATCTGCTGGGAAAGTTTACGTAG
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protein sequence of rna2470

>rna2470-protein ID=rna2470-protein|Name=rna2470|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQAVVEASSPD
DFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAVFVKVIGD
STPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI
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mRNA from alignment at CM002459.1:466781..468473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2470 ID=rna2470|Name=rna2470|organism=Nannochloropsis gaditana|type=mRNA|length=1693bp|location=Sequence derived from alignment at CM002459.1:466781..468473+ (Nannochloropsis gaditana)
CCGGCGCCTTGCAATTAGATCCACGCTGCCGCACACGCCGCAGGCTCAAG
CTGGGAGTGAACGCGAGACAGCGACTCGGAGATCCTGACCTTTGGGACTG
AGAGGTGTGCTTCGCCGGCCttgattttttccccccgTACCTCGTCCTCA
TGCATCTCTCCATTGTCCGACCCCGTCAACCTTCACCTTACCGCAAGGTG
CCACCAGGACCCGCAAAAGTTGGAGGTTGCAGTGAAAATTCCCCAGTCGT
AGCAAAGAATTATGACGAGAACCTTGCTTtactttttccttcttggagCC
GTACTCCTTTCTGCGTCGGACGCCTTCGTTGCACCACCCGTCCACAGCAG
CAGGGCATCAAGGGTTCAGCTCGTTCGCCAGCAGGCAGTAGTGGAagcgt
cctcccccgatGACTTCGATAAGGTAAGGTGCCTCCCCTTGTTGAACTGT
GCTTAACATCATCAGTTGCCCGTTAGATATCCGGCACCGCAATGGATTGG
CACCTAGTGTAGTCTGGATTTCCTTGTTCTTTCCTTACGCGGCCTGACGT
CTGTCTCGTTCTTCAACCCTCTCCCTTGATTTCGCGTGCAATCATTTTTC
ACTTGCCCTCACTGCTGTTCGTTTTTCTTGGTCTAGTCAGTATTTAGCAT
TATCTAACGTCTTCATGTCTACTTCATCTGTAGCTGGTAACGGGCGCTGG
TGAAAAGCTCCTGATCGTCGATTACTCCACGACATGGTGCGGACCCTGCA
AGATGATGGCTCCGAAATTTGATGAGATGTCCTCGCGCTTTGATGCAGTT
TTCGTGAAGGTAATTGGTGACTCCACACCTGAAGCGGGACAGCTCCTCAA
ACGCGAGGGCGTGCGATCGGTGCCGGCCTTTCACTTCTGGAAGAACGGAA
AGCGTGTGGACTCCATTTCTGGTGCGGACCCAGAACGGCTCGAGGACGTG
ATCTCCCAAAATATATAAATTCGGCGTGGAAGGGAGCGAACTAGTATAAA
GGCCATCGTGCCGTCAGCTATTGATGTTGTTTTGCCTTGCATAGATTTTG
ACCAGGAGTCAGGGAGAAAATCGATATGGATTGCGCGAGCACGTGCGTGT
CGAATAATCTATAAGAGCAGTCTACCGGATGCATCTTGAGGATGTAGTCT
ACGACAGATTAAAGTAGAGACGGCTATCGCACCATTCAATATGAATCATG
AATAGAAATGTGAGCACACAAAGTCTCTCTCAGCAGTCGTCATGATATCT
ATGGAATATAGTTTTTTCTTTATCTCCGACCCGATGATCAACGCGATGTC
CTGTATATTGTCTATCTTATTCATCTTCTTCGTAATCGTCAACAGGTGTC
GCACTCACACAATCATAGTGGGTAGAACTCGAATAGCTCTTTTCACTGAA
GAGAGAATGCCGGATTATACCCGTCTTGAATTTCAGAGCTgggatctcct
ccttcattttcatGTCCGCAATTTTCAACCTTACAACTAGAGGAGTGCAA
GTTACATCTTTAGCGTCAGCAATGGCTTCTGGTGAGGACATGCGACCTAG
TGGGTTATCACTTaatgcctccctttctttttgctgCAGTCGCACGCAAC
GCTCATTTAGCTTTCGTAAATCGTTTTTGAGGACTTGTATCCGTCTTGAT
TGTAATTGACATACGTTTTGCTGATCGATAATTTGATTTTTGA
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Coding sequence (CDS) from alignment at CM002459.1:466781..468473+

>rna2470 ID=rna2470|Name=rna2470|organism=Nannochloropsis gaditana|type=CDS|length=894bp|location=Sequence derived from alignment at CM002459.1:466781..468473+ (Nannochloropsis gaditana)
ATGACGAGAACCTTGCTTtactttttccttcttggagCCGTACTCCTTTC
TGCGTCGGACGCCTTCGTTGCACCACCCGTCCACAGCAGCAGGGCATCAA
GGGTTCAGCTCGTTCGCCAGCAGGCAGTAGTGGAagcgtcctcccccgat
GACTTCGATAAGCTGGTAACGGGCGCTGGTGAAAAGCTCCTGATCGTCGA
TTACTCCACGACATGGTGCGGACCCTGCAAGATGATGGCTCCGAAATTTG
ATGAGATGTCCTCGCGCTTTGATGCAGTTTTCGTGAAGGTAATTGGTGAC
TCCACACCTGAAGCGGGACAGCTCCTCAAACGCGAGGGCGTGCGATCGGT
GCCGGCCTTTCACTTCTGGAAGAACGGAAAGCGTGTGGACTCCATTTCTG
GTGCGGACCCAGAACGGCTCGAGGACGTGATCTCCCAAAATATATAAATG
ACGAGAACCTTGCTTtactttttccttcttggagCCGTACTCCTTTCTGC
GTCGGACGCCTTCGTTGCACCACCCGTCCACAGCAGCAGGGCATCAAGGG
TTCAGCTCGTTCGCCAGCAGGCAGTAGTGGAagcgtcctcccccgatGAC
TTCGATAAGCTGGTAACGGGCGCTGGTGAAAAGCTCCTGATCGTCGATTA
CTCCACGACATGGTGCGGACCCTGCAAGATGATGGCTCCGAAATTTGATG
AGATGTCCTCGCGCTTTGATGCAGTTTTCGTGAAGGTAATTGGTGACTCC
ACACCTGAAGCGGGACAGCTCCTCAAACGCGAGGGCGTGCGATCGGTGCC
GGCCTTTCACTTCTGGAAGAACGGAAAGCGTGTGGACTCCATTTCTGGTG
CGGACCCAGAACGGCTCGAGGACGTGATCTCCCAAAATATATAA
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Synonyms
Publications