EWM28306.1, cds2462 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|553179682|ref|XP_005852743.1| (thioredoxin f [Nannochloropsis gaditana CCMP526] >gi|422295787|gb|EKU23086.1| thioredoxin f [Nannochloropsis gaditana CCMP526] >gi|585110651|gb|EWM28306.1| thioredoxin f [Nannochloropsis gaditana]) HSP 1 Score: 304.294 bits (778), Expect = 8.936e-105 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
Query: 1 MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI
Sbjct: 1 MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|1072222334|gb|OEU07099.1| (thioredoxin f [Fragilariopsis cylindrus CCMP1102] >gi|1072232329|gb|OEU17061.1| thioredoxin f [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 141.739 bits (356), Expect = 1.747e-40 Identity = 68/149 (45.64%), Postives = 102/149 (68.46%), Query Frame = 0
Query: 1 MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
++TLL F L S DA P +S + L AVV+ FDK + A ++IVDYSTTWCGPCK++APKFDE+S ++ D VF+KVIGD++P+A +L+KREGVRSVP+FH++K+G++VD ++GA+ E +E +++++
Sbjct: 5 FSKTLLLAF--ATALFSVEDAIAFSPTGASVTRQQCLTPLMAVVDIDGETPFDKTIKSANGGVVIVDYSTTWCGPCKVIAPKFDELSEKYPDVVFLKVIGDASPDASKLMKREGVRSVPSFHYFKDGEKVDVVNGANAEAIEACLTKHL 151
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|551636048|ref|XP_005820852.1| (hypothetical protein GUITHDRAFT_81021 [Guillardia theta CCMP2712] >gi|428164861|gb|EKX33872.1| hypothetical protein GUITHDRAFT_81021 [Guillardia theta CCMP2712]) HSP 1 Score: 139.428 bits (350), Expect = 4.882e-40 Identity = 59/113 (52.21%), Postives = 88/113 (77.88%), Query Frame = 0
Query: 42 AVVEASSPDDFDKLVTGAG-----EKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
AV++ +S + D+ + AG L+I+DYSTTWCGPCK++APK+DEMS ++ DA+F+K +GD++PEA +L+KREG+RSVPAFHFWK G +++ I+GA+ E LE+ I +N+
Sbjct: 2 AVIDINSEQELDQAIEAAGWLAGENTLVIIDYSTTWCGPCKVIAPKYDEMSDKYKDAIFLKCVGDTSPEATKLMKREGIRSVPAFHFWKKGAKIEVIAGANVEALENTIKENL 114
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|922856721|gb|KOO25047.1| (thioredoxin f [Chrysochromulina sp. CCMP291]) HSP 1 Score: 137.887 bits (346), Expect = 5.629e-39 Identity = 71/158 (44.94%), Postives = 106/158 (67.09%), Query Frame = 0
Query: 1 MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQ---------AVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAV-FVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
M+R LL LLG +DAF PV ++ L+ QQ VV+ SS ++F+K + AG L++VDYST+WCGPCK++APKFDE S ++ +V F+KV+GDS+P A +L++ +GVR++P+FHFWKN ++++SISGA + L+D I N+
Sbjct: 1 MSRCLLLVALLGC-----ADAFR--PVLAAGPRSASLLLQQRARSSPPVAVVVDISSTEEFEKALDEAGPALVVVDYSTSWCGPCKIIAPKFDEFSEQYKSVTFLKVMGDSSPAADKLMRSQGVRALPSFHFWKNKEQIESISGAKTQALQDAIEANM 151
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|223995577|ref|XP_002287462.1| (thioredoxin f [Thalassiosira pseudonana CCMP1335] >gi|220976578|gb|EED94905.1| thioredoxin f [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 137.117 bits (344), Expect = 1.104e-38 Identity = 58/94 (61.70%), Postives = 84/94 (89.36%), Query Frame = 0
Query: 42 AVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
AVV+ +S +FD V+GAG+KL+++DYSTTWCGPCK++APKFDE+S ++ D+VF+KVIGD++P+A +L+KREGVRSVP+FH++KNG +VD ++G
Sbjct: 37 AVVDVNSEAEFDAKVSGAGDKLVVIDYSTTWCGPCKVIAPKFDELSDQYPDSVFIKVIGDASPDASKLMKREGVRSVPSFHYFKNGSKVDVVNG 130
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|298707120|emb|CBJ29912.1| (flagellar outer arm dynein 14 kDa light chain LC5 [Ectocarpus siliculosus]) HSP 1 Score: 136.346 bits (342), Expect = 1.241e-38 Identity = 58/95 (61.05%), Postives = 80/95 (84.21%), Query Frame = 0
Query: 51 DFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI 144
+ DKL + +KL++VDYSTTWCGPCKM+ PKF++++ ++ DAVFVKVIGDST +A QL+KREGVRSVP+FHFWK+GK+V+ ++GA+ E LE +
Sbjct: 25 ELDKLTSDNKDKLVVVDYSTTWCGPCKMILPKFEKLAEQYSDAVFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTL 119
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|397575393|gb|EJK49673.1| (hypothetical protein THAOC_31425 [Thalassiosira oceanica]) HSP 1 Score: 135.191 bits (339), Expect = 6.964e-37 Identity = 60/113 (53.10%), Postives = 89/113 (78.76%), Query Frame = 0
Query: 24 APPVHSSRASRVQLVRQ-QAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
AP +H + + R R QAV++ S FD ++ AG+ L+I+DYSTTWCGPCK++APKFDE+S + D++F+KVIGD+TP+A +L+KREGVRSVP+FH++KNG+++D ++G
Sbjct: 102 APSMHVNTSGRTAPSRPLQAVLDIDSEAAFDDKISSAGDSLVIIDYSTTWCGPCKVIAPKFDELSDSYPDSIFIKVIGDATPDASKLMKREGVRSVPSFHYFKNGEKIDVVNG 214
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|219119516|ref|XP_002180517.1| (thioredoxin f [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407990|gb|EEC47925.1| thioredoxin f [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 130.568 bits (327), Expect = 8.164e-36 Identity = 56/95 (58.95%), Postives = 80/95 (84.21%), Query Frame = 0
Query: 41 QAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
AVV+ S FD+ + AG L++VDYSTTWCGPCK++APKF+E+S ++ DAVF+KVIGD++P+A +L+KREGVRSVP+FH++KNG++VD ++G
Sbjct: 63 SAVVDIGSESAFDQTIASAGGSLVVVDYSTTWCGPCKVIAPKFEELSEKYGDAVFLKVIGDASPDASKLMKREGVRSVPSFHYFKNGEKVDVVNG 157
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|1210514112|dbj|GAX26894.1| (hypothetical protein FisN_9Lh190 [Fistulifera solaris]) HSP 1 Score: 129.798 bits (325), Expect = 9.838e-36 Identity = 55/94 (58.51%), Postives = 79/94 (84.04%), Query Frame = 0
Query: 42 AVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
AV++ +S FD + AG L++VDYSTTWCGPCK++APKF+E+S ++ DAVF+KVIGD++PEA +L+KREGVRSVP+FH++ NG++VD ++G
Sbjct: 41 AVIDIASESAFDSTIKNAGSALVVVDYSTTWCGPCKVIAPKFEELSEKYPDAVFLKVIGDASPEASKLMKREGVRSVPSFHYFVNGEKVDVVNG 134
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|1210530183|dbj|GAX11099.1| (hypothetical protein FisN_9Hh190 [Fistulifera solaris]) HSP 1 Score: 129.798 bits (325), Expect = 1.085e-35 Identity = 55/94 (58.51%), Postives = 79/94 (84.04%), Query Frame = 0
Query: 42 AVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
AV++ +S FD + AG L++VDYSTTWCGPCK++APKF+E+S ++ DAVF+KVIGD++PEA +L+KREGVRSVP+FH++ NG++VD ++G
Sbjct: 41 AVIDIASESAFDSTIKNAGSALVVVDYSTTWCGPCKVIAPKFEELSEKYPDAVFLKVIGDASPEASKLMKREGVRSVPSFHYFVNGEKVDVVNG 134 The following BLAST results are available for this feature:
BLAST of EWM28306.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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