EWM28306.1, cds2462 (CDS) Nannochloropsis gaditana

Overview
NameEWM28306.1
Unique Namecds2462
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:467042..467203 +
Alignment locationCM002459.1:467464..467748 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28306.1
Productthioredoxin f
Orig transcript idgnl|cribi|Naga_100004g111.9237.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:467042..467203 +
CM002459.1supercontigCM002459.1:467464..467748 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR017937Thioredoxin_CS
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|553179682|ref|XP_005852743.1| (thioredoxin f [Nannochloropsis gaditana CCMP526] >gi|422295787|gb|EKU23086.1| thioredoxin f [Nannochloropsis gaditana CCMP526] >gi|585110651|gb|EWM28306.1| thioredoxin f [Nannochloropsis gaditana])

HSP 1 Score: 304.294 bits (778), Expect = 8.936e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
Query:    1 MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
            MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI
Sbjct:    1 MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148          
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|1072222334|gb|OEU07099.1| (thioredoxin f [Fragilariopsis cylindrus CCMP1102] >gi|1072232329|gb|OEU17061.1| thioredoxin f [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 141.739 bits (356), Expect = 1.747e-40
Identity = 68/149 (45.64%), Postives = 102/149 (68.46%), Query Frame = 0
Query:    1 MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
             ++TLL  F     L S  DA    P  +S   +  L    AVV+      FDK +  A   ++IVDYSTTWCGPCK++APKFDE+S ++ D VF+KVIGD++P+A +L+KREGVRSVP+FH++K+G++VD ++GA+ E +E  +++++
Sbjct:    5 FSKTLLLAF--ATALFSVEDAIAFSPTGASVTRQQCLTPLMAVVDIDGETPFDKTIKSANGGVVIVDYSTTWCGPCKVIAPKFDELSEKYPDVVFLKVIGDASPDASKLMKREGVRSVPSFHYFKDGEKVDVVNGANAEAIEACLTKHL 151          
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|551636048|ref|XP_005820852.1| (hypothetical protein GUITHDRAFT_81021 [Guillardia theta CCMP2712] >gi|428164861|gb|EKX33872.1| hypothetical protein GUITHDRAFT_81021 [Guillardia theta CCMP2712])

HSP 1 Score: 139.428 bits (350), Expect = 4.882e-40
Identity = 59/113 (52.21%), Postives = 88/113 (77.88%), Query Frame = 0
Query:   42 AVVEASSPDDFDKLVTGAG-----EKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
            AV++ +S  + D+ +  AG       L+I+DYSTTWCGPCK++APK+DEMS ++ DA+F+K +GD++PEA +L+KREG+RSVPAFHFWK G +++ I+GA+ E LE+ I +N+
Sbjct:    2 AVIDINSEQELDQAIEAAGWLAGENTLVIIDYSTTWCGPCKVIAPKYDEMSDKYKDAIFLKCVGDTSPEATKLMKREGIRSVPAFHFWKKGAKIEVIAGANVEALENTIKENL 114          
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|922856721|gb|KOO25047.1| (thioredoxin f [Chrysochromulina sp. CCMP291])

HSP 1 Score: 137.887 bits (346), Expect = 5.629e-39
Identity = 71/158 (44.94%), Postives = 106/158 (67.09%), Query Frame = 0
Query:    1 MTRTLLYFFLLGAVLLSASDAFVAPPVHSSRASRVQLVRQQ---------AVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRFDAV-FVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVISQNI 148
            M+R LL   LLG      +DAF   PV ++      L+ QQ          VV+ SS ++F+K +  AG  L++VDYST+WCGPCK++APKFDE S ++ +V F+KV+GDS+P A +L++ +GVR++P+FHFWKN ++++SISGA  + L+D I  N+
Sbjct:    1 MSRCLLLVALLGC-----ADAFR--PVLAAGPRSASLLLQQRARSSPPVAVVVDISSTEEFEKALDEAGPALVVVDYSTSWCGPCKIIAPKFDEFSEQYKSVTFLKVMGDSSPAADKLMRSQGVRALPSFHFWKNKEQIESISGAKTQALQDAIEANM 151          
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|223995577|ref|XP_002287462.1| (thioredoxin f [Thalassiosira pseudonana CCMP1335] >gi|220976578|gb|EED94905.1| thioredoxin f [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 137.117 bits (344), Expect = 1.104e-38
Identity = 58/94 (61.70%), Postives = 84/94 (89.36%), Query Frame = 0
Query:   42 AVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
            AVV+ +S  +FD  V+GAG+KL+++DYSTTWCGPCK++APKFDE+S ++ D+VF+KVIGD++P+A +L+KREGVRSVP+FH++KNG +VD ++G
Sbjct:   37 AVVDVNSEAEFDAKVSGAGDKLVVIDYSTTWCGPCKVIAPKFDELSDQYPDSVFIKVIGDASPDASKLMKREGVRSVPSFHYFKNGSKVDVVNG 130          
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|298707120|emb|CBJ29912.1| (flagellar outer arm dynein 14 kDa light chain LC5 [Ectocarpus siliculosus])

HSP 1 Score: 136.346 bits (342), Expect = 1.241e-38
Identity = 58/95 (61.05%), Postives = 80/95 (84.21%), Query Frame = 0
Query:   51 DFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI 144
            + DKL +   +KL++VDYSTTWCGPCKM+ PKF++++ ++ DAVFVKVIGDST +A QL+KREGVRSVP+FHFWK+GK+V+ ++GA+ E LE  +
Sbjct:   25 ELDKLTSDNKDKLVVVDYSTTWCGPCKMILPKFEKLAEQYSDAVFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTL 119          
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|397575393|gb|EJK49673.1| (hypothetical protein THAOC_31425 [Thalassiosira oceanica])

HSP 1 Score: 135.191 bits (339), Expect = 6.964e-37
Identity = 60/113 (53.10%), Postives = 89/113 (78.76%), Query Frame = 0
Query:   24 APPVHSSRASRVQLVRQ-QAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
            AP +H + + R    R  QAV++  S   FD  ++ AG+ L+I+DYSTTWCGPCK++APKFDE+S  + D++F+KVIGD+TP+A +L+KREGVRSVP+FH++KNG+++D ++G
Sbjct:  102 APSMHVNTSGRTAPSRPLQAVLDIDSEAAFDDKISSAGDSLVIIDYSTTWCGPCKVIAPKFDELSDSYPDSIFIKVIGDATPDASKLMKREGVRSVPSFHYFKNGEKIDVVNG 214          
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|219119516|ref|XP_002180517.1| (thioredoxin f [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407990|gb|EEC47925.1| thioredoxin f [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 130.568 bits (327), Expect = 8.164e-36
Identity = 56/95 (58.95%), Postives = 80/95 (84.21%), Query Frame = 0
Query:   41 QAVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
             AVV+  S   FD+ +  AG  L++VDYSTTWCGPCK++APKF+E+S ++ DAVF+KVIGD++P+A +L+KREGVRSVP+FH++KNG++VD ++G
Sbjct:   63 SAVVDIGSESAFDQTIASAGGSLVVVDYSTTWCGPCKVIAPKFEELSEKYGDAVFLKVIGDASPDASKLMKREGVRSVPSFHYFKNGEKVDVVNG 157          
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|1210514112|dbj|GAX26894.1| (hypothetical protein FisN_9Lh190 [Fistulifera solaris])

HSP 1 Score: 129.798 bits (325), Expect = 9.838e-36
Identity = 55/94 (58.51%), Postives = 79/94 (84.04%), Query Frame = 0
Query:   42 AVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
            AV++ +S   FD  +  AG  L++VDYSTTWCGPCK++APKF+E+S ++ DAVF+KVIGD++PEA +L+KREGVRSVP+FH++ NG++VD ++G
Sbjct:   41 AVIDIASESAFDSTIKNAGSALVVVDYSTTWCGPCKVIAPKFEELSEKYPDAVFLKVIGDASPEASKLMKREGVRSVPSFHYFVNGEKVDVVNG 134          
BLAST of EWM28306.1 vs. NCBI_GenBank
Match: gi|1210530183|dbj|GAX11099.1| (hypothetical protein FisN_9Hh190 [Fistulifera solaris])

HSP 1 Score: 129.798 bits (325), Expect = 1.085e-35
Identity = 55/94 (58.51%), Postives = 79/94 (84.04%), Query Frame = 0
Query:   42 AVVEASSPDDFDKLVTGAGEKLLIVDYSTTWCGPCKMMAPKFDEMSSRF-DAVFVKVIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISG 134
            AV++ +S   FD  +  AG  L++VDYSTTWCGPCK++APKF+E+S ++ DAVF+KVIGD++PEA +L+KREGVRSVP+FH++ NG++VD ++G
Sbjct:   41 AVIDIASESAFDSTIKNAGSALVVVDYSTTWCGPCKVIAPKFEELSEKYPDAVFLKVIGDASPEASKLMKREGVRSVPSFHYFVNGEKVDVVNG 134          
The following BLAST results are available for this feature:
BLAST of EWM28306.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179682|ref|XP_005852743.1|8.936e-105100.00thioredoxin f [Nannochloropsis gaditana CCMP526] >... [more]
gi|1072222334|gb|OEU07099.1|1.747e-4045.64thioredoxin f [Fragilariopsis cylindrus CCMP1102] ... [more]
gi|551636048|ref|XP_005820852.1|4.882e-4052.21hypothetical protein GUITHDRAFT_81021 [Guillardia ... [more]
gi|922856721|gb|KOO25047.1|5.629e-3944.94thioredoxin f [Chrysochromulina sp. CCMP291][more]
gi|223995577|ref|XP_002287462.1|1.104e-3861.70thioredoxin f [Thalassiosira pseudonana CCMP1335] ... [more]
gi|298707120|emb|CBJ29912.1|1.241e-3861.05flagellar outer arm dynein 14 kDa light chain LC5 ... [more]
gi|397575393|gb|EJK49673.1|6.964e-3753.10hypothetical protein THAOC_31425 [Thalassiosira oc... [more]
gi|219119516|ref|XP_002180517.1|8.164e-3658.95thioredoxin f [Phaeodactylum tricornutum CCAP 1055... [more]
gi|1210514112|dbj|GAX26894.1|9.838e-3658.51hypothetical protein FisN_9Lh190 [Fistulifera sola... [more]
gi|1210530183|dbj|GAX11099.1|1.085e-3558.51hypothetical protein FisN_9Hh190 [Fistulifera sola... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2470rna2470Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications