rna2464, rna2464 (mRNA) Nannochloropsis gaditana

Overview
Namerna2464
Unique Namerna2464
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1932
Alignment locationCM002459.1:446820..447994 -

Link to JBrowse

Properties
Property NameValue
Productf-actin-capping protein subunit beta
Orig transcript idgnl|cribi|Naga_100004g104.9095.mrna
Orig protein idgnl|cribi|Naga_100004g104.9095
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:446820..447994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g104gene2357Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2464rna2464-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28164.1cds2456Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2464 ID=rna2464|Name=rna2464|organism=Nannochloropsis gaditana|type=mRNA|length=1932bp
ATGTGGCGTTATGGCAGAACATTAATTTGGAATTCGCATGCCTGCAAACG
ATTCCGGGGCACATTGTCCATACCGCCGAGTAAACCTTCTTTGAAAGTGC
CTGCCAACCCTGTCACTTCGCAAGATCATGTAAAGTGGCCAGCTGTCAAA
ATCTTTGGCGGCACTCAGGCACAGCGTCAGAATGTTGCAACCCGTCTGTT
ACGAATTCCTGAGTGGCATACCAAGCTCAAGCATGAGGCGATCACCATCT
GCCTGCTGACTGATGACCTCTTTCATGAGTCTGTGGCTACGGAAGCTTCA
ACCATCAATGAACAGAGCATAGATCTCCCGTCCTCTACCTCATCCTCTTC
CTCGCCCTCGGGTCCCCTTGCGGAGGCCTTTTTAAAAAGCGATTTAATCG
GCACAATCCTCACCATCTTTCACGTGGACGCTCAGGAGAAACGTCATCTT
ATAAAGGTGCACGGCACGGACGTTGTCCGCTCCTGGGCCAAGGATACGCT
CCGCCAGCATTTGGCGTCTATGGGAAGCGTCGGGGCCACAGGGCTCATCC
TCGAACCAATCTTAATGGACTTGGCCTCGCAAAATTCGGACGAAACCTAC
GAAGATGATGCATTGCTGGCGCAAGCATTAGTGAAGAAGAATTCACTAAA
AACTAGCGTGCTCCTGGGTACATTGATACCCGAAAGACACGCTGGCAAAC
TTGTCTTGCTCGTATTTCCGCGAAGAGAGACTCGGCCGTCCGAGGGGTTG
CATCGAGTGGAACGTCTCCTCCTTGACTATTGCCGCAAAAACTTGATAAC
TTTGCAGACGTATTATCTGGCATTGGATCGAGCCTACTCCTCGGATGTGG
AGGTGAGAGACCGAGAAGCTCTGCGCTTCAAGCGCGTGGTGGCTGCCCTG
CCCCGGGGGTCCTTGGTGCTGGGCGAGGAAGCGGCATTGGATGTGCTCAT
GGAATGGACACTACAGGCGCGATGTCGCGAAGGGCTTCTTTCTCCCCAGC
CAAACGCTCATGCCTGTCCCACAAGCGACGGCAGTCCTACGCACCCCCCG
GCCTTAGACGTGGACATGTCGACATTTTACCTAGCTCTCGTCAATTTCTT
CTACGGGCCCCCCAGCGACGTCCTGGCAGGGAGCCATCGCCTGGAAAATC
TGGGTCCACAAGACACAATCCTTGTCACTGATGACGGGCACCATCCGTAC
GATGATGGGCACCACGGCGGGAGTCGTGATTGCTACGGCCTCAAAAGCGC
CGGAATTGGAAAGGGCGGGACTTTTGGCGCAGCCGGTGTGGGAGCTGTTC
CATCGATACAGGCAGTTGTGCGGGGGCAGAATGTGGCAAAAATGCTGCGA
AAACGGTTGGAGGAAAAATTTGGCTCCGACCAATCCCCGAAGGTTGTGTG
TGGAGATCTTCAAAAGCAAGACTTATCCGCGTACAGCTTAGTAATAATCC
ACTCTGGAAATCATCCAATCGAACCCAGCACGTATAGACGTAGACTGGAC
ATGTGCAAGAACGCAGGTGTAGCTGTCTCGACGCCTTCCCAACTCAAGAC
GTGGTTGCATCGACCGGCAAGTTTGGCAGCCGTCCTAAAGGTATGGCCGC
GTTCCTTCAAGGCCCGTGTGCTTGGAGAAGGAGAGAATCCCGAGGACGTG
CACGGAGATCGACTCAGAGAGTGTGACAAGCAAGAAGAGAACCTAGCTGG
AGGAAAACAAAAAGATCATATCACGTTGAAGTCGCAAAAGAGAATGATTG
GCACGGCGACACATGATGAAAGCCCATGGGGACATGGTTTCGCGAAATTG
GGCGACAACACTTGCAGTGAGTGCGGATCTTGGTCCTGCGGCGAATGCAC
CAAGAAGCGCCAGCAGTATGCTGCCAGGCTTGGCAAGCAGCATCAGCATG
GCTTGGGACTTGAATGGCGCGACTTGTATTAA
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protein sequence of rna2464

>rna2464-protein ID=rna2464-protein|Name=rna2464|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MRDATASSQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRV
DVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPS
HYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAAT
TSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGR
ADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGH
ISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRRSSATTKSKGGGVYG
ENSAEGTRARQRPAEVLSVGQASFSSEHQKSLFAAIARRNAERESNHKDY
IYEA
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mRNA from alignment at CM002459.1:446820..447994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2464 ID=rna2464|Name=rna2464|organism=Nannochloropsis gaditana|type=mRNA|length=1175bp|location=Sequence derived from alignment at CM002459.1:446820..447994- (Nannochloropsis gaditana)
ATGCGTGACGCTACAGCATCATCACAGGAGCAGCTCAGGGCGTGCCTCAA
TCTCATGCGGCGACTGCCTCCCTATAAGCAACAGAAAAATCTCCAGGAGC
TGCAGCTATTAGTTCCGTCTATTGTAGGGGAGGAGCTTTTGCAGCGAGTC
GACGTACCTCTGGAAGAAGGAATTGATATGAAAACGGTATGCGCTTGTTA
AGCATCTGAAAGCGGGAAAATCTGATTTACATTCCGCACGCTACATAATG
TATTTTTGTTGCGGAGGCTCATTGCTACATGCATATGATCGAACAGAATC
AGCCCTATTTGCTATGCGCCTTCAACCGGGAAGGTTCCTCACACCGGTCG
CCCTGGTCCAACCTGTATTTCCCCCCCGCGCCCTCGCCGTCCTCCCTCTT
CTATCCCTCCCACTACTTGCGAAGTTTGGAAGTCAAAGCCAACGCCGCAT
TCCAGATCTATCGGGAGCTCTACTATGATGGGCAAGGGGTCTCATCGGTA
TATTTGTGGGAATTGAGCGATGAAGACGCGGACATTTCAGAGACGGCCGG
TGCGGCCACCACGTCGGGCTCCACAGCCTCTCCACGTGTGGGATTCGCCG
GATGTTTTGCAATCAAAAAAGGAGTTCTAGGTGACCGGTCGCGTCGACAC
GGTACATGGGATGCAACGCATGTCGTTGAGGTCCAGCCCTTGTGTTCGGC
GGTCGGCAGAGCAGATATTTTGGCGCATTACAAATTGACGTCGACAATAC
AGGTGTCGTTGTTTGCCAGTAGTGATGAATCAGAAGATGTATGTGCGGCA
TGTGTAATTACTAAATTTGTAGAAGCTACTCATCCGGTCGTAGAAAGTAC
AGGGGGACACATATCTAACGTCGGGCGAATGATTGAAGATCTAGAGATTA
AATTGAGGGGTGATTTGGGCGCGCTTTACCTGCAGAGAACGTGTGATATA
GTTGAAAAGGTGCGAAGATCTTCAGCAACTACGAAAAGCAAAGGTGGGGG
AGTATATGGGGAAAACTCTGCCGAGGGCACAAGGGCTCGCCAACGTCCTG
CAGAGGTCCTTAGTGTCGGTCAAGCTTCTTTTTCATCCGAGCACCAAAAG
TCTTTGTTTGCTGCCATTGCCAGACGGAATGCAGAGCGAGAAAGCAATCA
TAAGGACTATATCTACGAGGCGTAA
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Coding sequence (CDS) from alignment at CM002459.1:446820..447994-

>rna2464 ID=rna2464|Name=rna2464|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002459.1:446820..447994- (Nannochloropsis gaditana)
AATCAGCCCTATTTGCTATGCGCCTTCAACCGGGAAGGTTCCTCACACCG
GTCGCCCTGGTCCAACCTGTATTTCCCCCCCGCGCCCTCGCCGTCCTCCC
TCTTCTATCCCTCCCACTACTTGCGAAGTTTGGAAGTCAAAGCCAACGCC
GCATTCCAGATCTATCGGGAGCTCTACTATGATGGGCAAGGGGTCTCATC
GGTATATTTGTGGGAATTGAGCGATGAAGACGCGGACATTTCAGAGACGG
CCGGTGCGGCCACCACGTCGGGCTCCACAGCCTCTCCACGTGTGGGATTC
GCCGGATGTTTTGCAATCAAAAAAGGAGTTCTAGGTGACCGGTCGCGTCG
ACACGGTACATGGGATGCAACGCATGTCGTTGAGGTCCAGCCCTTGTGTT
CGGCGGTCGGCAGAGCAGATATTTTGGCGCATTACAAATTGACGTCGACA
ATACAGGTGTCGTTGTTTGCCAGTAGTGATGAATCAGAAGATGTATGTGC
GGCATGTGTAATTACTAAATTTGTAGAAGCTACTCATCCGGTCGTAGAAA
GTACAGGGGGACACATATCTAACGTCGGGCGAATGATTGAAGATCTAGAG
ATTAAATTGAGGGGTGATTTGGGCGCGCTTTACCTGCAGAGAACGTGTGA
TATAGTTGAAAAGGTGCGAAGATCTTCAGCAACTACGAAAAGCAAAGGTG
GGGGAGTATATGGGGAAAACTCTGCCGAGGGCACAAGGGCTCGCCAACGT
CCTGCAGAGGTCCTTAGTGTCGGTCAAGCTTCTTTTTCATCCGAGCACCA
AAAGTCTTTGTTTGCTGCCATTGCCAGACGGAATGCAGAGCGAGAAAGCA
ATCATAAGGACTATATCTACGAGGCGTAAATGCGTGACGCTACAGCATCA
TCACAGGAGCAGCTCAGGGCGTGCCTCAATCTCATGCGGCGACTGCCTCC
CTATAAGCAACAGAAAAATCTCCAGGAGCTGCAGCTATTAGTTCCGTCTA
TTGTAGGGGAGGAGCTTTTGCAGCGAGTCGACGTACCTCTGGAAGAAGGA
ATTGATATGAAAACGAATCAGCCCTATTTGCTATGCGCCTTCAACCGGGA
AGGTTCCTCACACCGGTCGCCCTGGTCCAACCTGTATTTCCCCCCCGCGC
CCTCGCCGTCCTCCCTCTTCTATCCCTCCCACTACTTGCGAAGTTTGGAA
GTCAAAGCCAACGCCGCATTCCAGATCTATCGGGAGCTCTACTATGATGG
GCAAGGGGTCTCATCGGTATATTTGTGGGAATTGAGCGATGAAGACGCGG
ACATTTCAGAGACGGCCGGTGCGGCCACCACGTCGGGCTCCACAGCCTCT
CCACGTGTGGGATTCGCCGGATGTTTTGCAATCAAAAAAGGAGTTCTAGG
TGACCGGTCGCGTCGACACGGTACATGGGATGCAACGCATGTCGTTGAGG
TCCAGCCCTTGTGTTCGGCGGTCGGCAGAGCAGATATTTTGGCGCATTAC
AAATTGACGTCGACAATACAGGTGTCGTTGTTTGCCAGTAGTGATGAATC
AGAAGATGTATGTGCGGCATGTGTAATTACTAAATTTGTAGAAGCTACTC
ATCCGGTCGTAGAAAGTACAGGGGGACACATATCTAACGTCGGGCGAATG
ATTGAAGATCTAGAGATTAAATTGAGGGGTGATTTGGGCGCGCTTTACCT
GCAGAGAACGTGTGATATAGTTGAAAAGGTGCGAAGATCTTCAGCAACTA
CGAAAAGCAAAGGTGGGGGAGTATATGGGGAAAACTCTGCCGAGGGCACA
AGGGCTCGCCAACGTCCTGCAGAGGTCCTTAGTGTCGGTCAAGCTTCTTT
TTCATCCGAGCACCAAAAGTCTTTGTTTGCTGCCATTGCCAGACGGAATG
CAGAGCGAGAAAGCAATCATAAGGACTATATCTACGAGGCGTAAATGCGT
GACGCTACAGCATCATCACAGGAGCAGCTCAGGGCGTGCCTCAATCTCAT
GCGGCGACTGCCTCCCTATAAGCAACAGAAAAATCTCCAGGAGCTGCAGC
TATTAGTTCCGTCTATTGTAGGGGAGGAGCTTTTGCAGCGAGTCGACGTA
CCTCTGGAAGAAGGAATTGATATGAAAACG
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Synonyms
Publications