EWM28164.1, cds2456 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|585110509|gb|EWM28164.1| (f-actin-capping protein subunit beta [Nannochloropsis gaditana]) HSP 1 Score: 734.561 bits (1895), Expect = 0.000e+0 Identity = 354/354 (100.00%), Postives = 354/354 (100.00%), Query Frame = 0 Query: 1 MRDATASSQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRRSSATTKSKGGGVYGENSAEGTRARQRPAEVLSVGQASFSSEHQKSLFAAIARRNAERESNHKDYIYEA 354 MRDATASSQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRRSSATTKSKGGGVYGENSAEGTRARQRPAEVLSVGQASFSSEHQKSLFAAIARRNAERESNHKDYIYEA Sbjct: 1 MRDATASSQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRRSSATTKSKGGGVYGENSAEGTRARQRPAEVLSVGQASFSSEHQKSLFAAIARRNAERESNHKDYIYEA 354
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|1214702203|gb|OWZ14437.1| (F-actin-capping protein subunit beta [Phytophthora megakarya]) HSP 1 Score: 211.075 bits (536), Expect = 7.785e-63 Identity = 112/279 (40.14%), Postives = 162/279 (58.06%), Query Frame = 0 Query: 8 SQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRR 286 S++ + ACLNLMRR+PP + + ++ L LVPS+ +EL QRVD PL+ +D + YLLC +NR+G S+RSPW+N Y PA S FYPS LR LEV+AN F YRELYY G G+SSVY+W+L GFA CF +KK VL R G+W++ HV+EVQ + + A Y+LT+++ +S+ + E D+ +T+ E T E H+SN+GRM+ED+EI +R L LY+ +T +++ +R+ Sbjct: 2 SEDGMTACLNLMRRMPPREVETDVYNLTRLVPSLT-DELYQRVDQPLQVAVDPANGRKYLLCDYNRDGDSYRSPWTNQY-DPAVSDGEGFYPSETLRELEVQANEIFDSYRELYYQG-GISSVYMWDLEP-----------------------GFAACFLVKKDVLDQRFVEKGSWNSIHVIEVQEGSDVLDKGVKKATYRLTTSVLLSMKVNRPELGDLTMDGTLTRQTERTME-FEDQFAHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRK 253
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|301103759|ref|XP_002900965.1| (F-actin-capping protein subunit beta, putative [Phytophthora infestans T30-4] >gi|262101303|gb|EEY59355.1| F-actin-capping protein subunit beta, putative [Phytophthora infestans T30-4]) HSP 1 Score: 210.69 bits (535), Expect = 1.404e-62 Identity = 111/275 (40.36%), Postives = 159/275 (57.82%), Query Frame = 0 Query: 12 LRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRR 286 + +CLNLMRR+PP + + ++ L LVPSI +EL QRVD PL+ +D + YLLC +NR+G S+RSPW+N Y PPA S F+PS LR LEV AN F YRELYY G G+SSVY+W+L +GFA CF +KK VL R G W++ HV+EVQ + + A Y+LT+++ +S+ + E D+ +T+ E T E H+SN+GRM+ED+EI +R L LY+ +T +++ +R+ Sbjct: 12 MTSCLNLMRRMPPREVETDVYNLTRLVPSI-ADELYQRVDQPLQVAVDPANGRKYLLCDYNRDGDSYRSPWTNQYDPPA-SDGEGFFPSETLRELEVHANEIFDSYRELYYQG-GISSVYMWDLE-----------------------LGFAACFLVKKDVLDQRFIEKGEWNSIHVIEVQEGSDVLDKGVKKATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTME-FEDQFAHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRK 259
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|567989793|gb|ETL40036.1| (hypothetical protein L916_08701 [Phytophthora parasitica] >gi|570951233|gb|ETP16490.1| hypothetical protein F441_08915 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 209.534 bits (532), Expect = 2.993e-62 Identity = 111/283 (39.22%), Postives = 161/283 (56.89%), Query Frame = 0 Query: 4 ATASSQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRR 286 A AS + +CLNLMRR+PP + + ++ L LVPSI ++L QRVD PL+ +D + YLLC +NR+G S+RSPW+N Y PPA FYPS LR LE++AN F YRELYY G G+SSVY+W+L GFA CF +KK V+ R G W++ HV+EVQ + + A Y+LT+++ +S+ + E D+ +T+ E T E H+SN+GRM+ED+EI +R L LY+ +T +++ +R+ Sbjct: 3 ADASGDGGMTSCLNLMRRMPPREVETDVYNLTRLVPSI-ADDLYQRVDQPLQVAVDPANGRKYLLCDYNRDGDSYRSPWTNQYDPPAADGEG-FYPSETLRELEIQANEIFDSYRELYYQG-GISSVYMWDLEP-----------------------GFAACFLVKKDVVDQRFVEKGEWNSIHVIEVQEGSDVLDKGVKKATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTME-FEDQFAHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRK 258
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|675193911|ref|XP_008905840.1| (hypothetical protein PPTG_11511 [Phytophthora parasitica INRA-310] >gi|566023789|gb|ETI46700.1| hypothetical protein F443_08944 [Phytophthora parasitica P1569] >gi|567961081|gb|ETK86626.1| hypothetical protein L915_08773 [Phytophthora parasitica] >gi|568019011|gb|ETL93168.1| hypothetical protein L917_08618 [Phytophthora parasitica] >gi|568049476|gb|ETM46460.1| hypothetical protein L914_08652 [Phytophthora parasitica] >gi|568093865|gb|ETN08653.1| hypothetical protein PPTG_11511 [Phytophthora parasitica INRA-310] >gi|570327443|gb|ETO75391.1| hypothetical protein F444_09013 [Phytophthora parasitica P1976] >gi|570985189|gb|ETP44551.1| hypothetical protein F442_08875 [Phytophthora parasitica P10297] >gi|970649113|gb|KUF88467.1| hypothetical protein AM588_10002717 [Phytophthora nicotianae]) HSP 1 Score: 209.534 bits (532), Expect = 3.518e-62 Identity = 111/283 (39.22%), Postives = 161/283 (56.89%), Query Frame = 0 Query: 4 ATASSQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRR 286 A AS + +CLNLMRR+PP + + ++ L LVPSI ++L QRVD PL+ +D + YLLC +NR+G S+RSPW+N Y PPA FYPS LR LE++AN F YRELYY G G+SSVY+W+L GFA CF +KK V+ R G W++ HV+EVQ + + A Y+LT+++ +S+ + E D+ +T+ E T E H+SN+GRM+ED+EI +R L LY+ +T +++ +R+ Sbjct: 3 ADASGDGGMTSCLNLMRRMPPREVETDVYNLTRLVPSI-ADDLYQRVDQPLQVAVDPANGRKYLLCDYNRDGDSYRSPWTNQYDPPAADGEG-FYPSETLRELEIQANEIFDSYRELYYQG-GISSVYMWDLEP-----------------------GFAACFLVKKDVVDQRFVEKGGWNSIHVIEVQEGSDVLDKGVKKATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTME-FEDQFAHVSNMGRMVEDMEIDMRSSLDGLYISKTREVINGMRK 258
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|939664175|ref|XP_014279602.1| (PREDICTED: F-actin-capping protein subunit beta [Halyomorpha halys]) HSP 1 Score: 209.149 bits (531), Expect = 3.798e-62 Identity = 127/305 (41.64%), Postives = 173/305 (56.72%), Query Frame = 0 Query: 8 SQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRR-HGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRRSSATTKSKGGGVYGENSAEGTRARQ 311 + +Q+ L+LMRRLPP + +KNL +L LVPS+ EELL VD PL+ +D + YLLC +NR+G S+RSPWSN Y PP S P+ LR LEV+ANAAF YRE+Y++G GVSSVYLW+L GFAG IKK GD S++ G WD+ HVVEVQ GR AHYKLTST+ + L + S + +T+ +E V E++ HI+N+GRM+ED+E K+R L +Y +T DIV +R + A ++ K ++ A + RQ Sbjct: 2 TDQQMDCALDLMRRLPPQEIEKNLSDLIDLVPSLC-EELLSSVDQPLKIALDKGVGKDYLLCDYNRDGDSYRSPWSNTYDPPLEDGS---MPTERLRKLEVEANAAFDQYREMYFEG-GVSSVYLWDLE----------------------MTGFAGAILIKKA--GDGSKKIKGCWDSIHVVEVQE--KTTGRN---AHYKLTSTVMLWLQTNKTGSGTMNLGGSLTRQMEQDAAVSEAS-PHIANIGRMVEDMENKIRNILNDIYFGKTKDIVNGLRSTQALSEQKAQAALRQDLAVALQKRQ 271
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|695414755|ref|XP_009526386.1| (hypothetical protein PHYSODRAFT_331311 [Phytophthora sojae] >gi|348677511|gb|EGZ17328.1| hypothetical protein PHYSODRAFT_331311 [Phytophthora sojae]) HSP 1 Score: 209.149 bits (531), Expect = 4.854e-62 Identity = 109/275 (39.64%), Postives = 160/275 (58.18%), Query Frame = 0 Query: 12 LRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRR 286 + +CLNLMRR+PP + + ++ L L+P++ ++L QRVD PL+ +D + YLLC +NR+G S+RSPWSN Y PPAP FYPS LR LEV+AN F YRELYY G G+SSVY+W+L GFA CF ++K VL R G+W++ HV+EVQ + + A Y+LT+++ +S+ + E D+ +T+ E T E H+SN+GRM+ED+EI +R L LY+ +T ++V +R+ Sbjct: 7 MTSCLNLMRRMPPREVETDVYNLTRLLPAL-ADDLYQRVDQPLQVAVDPTNGRKYLLCDYNRDGDSYRSPWSNQYDPPAPEGEG-FYPSETLRELEVQANEIFDSYRELYYQG-GISSVYMWDLEP-----------------------GFAACFLVQKDVLDQRFVEKGSWNSIHVIEVQEGSDVLDKGVKRATYRLTTSVLLSMKVNRPELGDLTLDGTLTRQAERTL-AFEDQFAHVSNMGRMVEDMEIDMRSSLDGLYISKTREVVNGMRK 254
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|985410371|ref|XP_015370628.1| (PREDICTED: F-actin-capping protein subunit beta [Diuraphis noxia]) HSP 1 Score: 207.223 bits (526), Expect = 2.709e-61 Identity = 122/279 (43.73%), Postives = 164/279 (58.78%), Query Frame = 0 Query: 8 SQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRR-HGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVR 285 S Q+ L+LMRRLPP K +K+L +L LVPS+ E+LL VD PL+ D + + +LLC +NR+G S+RSPWSN YFPP + P+ LR LE+ AN AF YRE+Y++G GVSSVYLW+L GFAG IKK +GD S++ GTWD+ HVVEVQ GR AHYKLTST+ + L + S + A +T+ E PV +S+ HI+N+GRM+ED+E K+R L +Y +TCDI+ +R Sbjct: 2 SDIQMDCALDLMRRLPPQKIEKHLSDLIDLVPSLC-EDLLSSVDQPLKIIRDKQVGKDFLLCDYNRDGDSYRSPWSNTYFPPLDDGA---VPTEKLRKLEIDANMAFDQYREMYFEG-GVSSVYLWDLDQ-----------------------GFAGVILIKK--VGDGSKKVRGTWDSIHVVEVQE--KNTGRN---AHYKLTSTVMLWLQTNKAVSGSMSLAGSLTRQTEMDSPVSDSS-PHIANIGRMVEDMENKMRNTLNEVYFGKTCDIMNGLR 244
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|648215804|ref|NP_001280328.1| (F-actin-capping protein subunit beta [Acyrthosiphon pisum] >gi|239793330|dbj|BAH72794.1| ACYPI000695 [Acyrthosiphon pisum]) HSP 1 Score: 207.223 bits (526), Expect = 2.709e-61 Identity = 122/279 (43.73%), Postives = 164/279 (58.78%), Query Frame = 0 Query: 8 SQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRR-HGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVR 285 S Q+ L+LMRRLPP K +K+L +L LVPS+ E+LL VD PL+ D + + +LLC +NR+G S+RSPWSN YFPP + P+ LR LE+ AN AF YRE+Y++G GVSSVYLW+L GFAG IKK +GD S++ GTWD+ HVVEVQ GR AHYKLTST+ + L + S + A +T+ E PV +S+ HI+N+GRM+ED+E K+R L +Y +TCDI+ +R Sbjct: 2 SDIQMDCALDLMRRLPPQKIEKHLSDLIDLVPSLC-EDLLSSVDQPLKIIRDKQVGKDFLLCDYNRDGDSYRSPWSNTYFPPLDDGA---VPTEKLRKLEIDANMAFDQYREMYFEG-GVSSVYLWDLDQ-----------------------GFAGVILIKK--VGDGSKKVRGTWDSIHVVEVQE--KNTGRN---AHYKLTSTVMLWLQTNKAVSGSMSLAGSLTRQTEMDSPVSDSS-PHIANIGRMVEDMENKMRNTLNEVYFGKTCDIMNGLR 244
BLAST of EWM28164.1 vs. NCBI_GenBank
Match: gi|961375874|gb|ALS04681.1| (F-actin-capping protein subunit beta isoform X1 [Pseudodiaptomus poplesia]) HSP 1 Score: 206.453 bits (524), Expect = 4.220e-61 Identity = 123/287 (42.86%), Postives = 163/287 (56.79%), Query Frame = 0 Query: 8 SQEQLRACLNLMRRLPPYKQQKNLQELQLLVPSIVGEELLQRVDVPLEEGIDMKTNQPYLLCAFNREGSSHRSPWSNLYFPPAPSPSSLFYPSHYLRSLEVKANAAFQIYRELYYDGQGVSSVYLWELSDEDADISETAGAATTSGSTASPRVGFAGCFAIKKGVLGDRSRRHGTWDATHVVEVQPLCSAVGRADILAHYKLTSTIQVSLFASSDESEDVCAACVITKFVEATHPVVESTGGHISNVGRMIEDLEIKLRGDLGALYLQRTCDIVEKVRRSSATTKSK 294 S++QL L+LMRRLPP + +KNL +L LVP + E+LL VD PL+ D + + YLLC +NR G S+RSPWSN Y PP + PS LR LE+ AN+AF YRE+Y++G GVSSVYLW+L GFAG IKK GD + G WD+ HVVEVQ S GR+ AHYKLTST + L + D S + +T+ VE V E+T HI+N+GR++ D+E K+R L A+Y +T DIV +R ++K Sbjct: 2 SEQQLDCALDLMRRLPPQQIEKNLSDLIDLVPDLC-EDLLSSVDQPLKIARDKQVGKDYLLCDYNRGGDSYRSPWSNTYEPPLDDGA---MPSDRLRKLEIDANSAFDQYREMYFEG-GVSSVYLWDLDH-----------------------GFAGVIVIKKVGDGDSKKIKGCWDSIHVVEVQEKSS--GRS---AHYKLTSTCMLWLQTNKDRSGTMNLGGSLTRQVEQDTAVTEAT-SHIANIGRLVGDMENKIRSTLNAIYFDKTRDIVNGLRSVKPLAETK 254 The following BLAST results are available for this feature:
BLAST of EWM28164.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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