rna2463, rna2463 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2463
Unique Name	rna2463
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	969
Alignment location	CM002459.1:444164..446204 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g103.9169.mrna
Orig protein id	gnl\|cribi\|Naga_100004g103.9169
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:444164..446204 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g103	gene2356	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2463	rna2463-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28238.1	cds2455	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:444164..446204-
coding sequence from alignment at CM002459.1:444164..446204-

mRNA sequence

>rna2463 ID=rna2463|Name=rna2463|organism=Nannochloropsis gaditana|type=mRNA|length=969bp
ATGGCACGTCAGTGCACAAAGGTCAGCCGGTACCCACACACTCTTCTGTC
CATCATGAAGTGGATCCTACGAGAGGGGATAGACTTCCAGCCCGAAGGCC
CCAACAGTCGGGGCTCCACCTTCACGCAGCTTTTTCAAGTAATCCCGGCC
ATCGAGCCATTCTACATGGAGTGGGAGAAGAAGTACGACTCCTCTCCCGT
TTATGAATGGATGAAAAGCGTGCCTTGGGTCCCCATTGCCGGCGTGATTC
TCTACGTGGTCGGAATCTTCGGAGGGCAGGCGCTCATGAAGAATCGCAAG
CCCTTCGACCTAAAATGGCCCCTGGCTTACTGGAACCTGGCGCTCTCCCT
CTTTTCCATCATGGGCATGGTCCGTGTCGTCCCCCACCTTATCTACCTAA
CTGCCACTAAAGGTTTGGGAGTGGTCGCCTGCGGGGCTCCGGAGCCGCTT
TACGGCAATGCGGCCGTGGGTTTCTGGGTCCAAGCTTTCATCCTCTCCAA
GCTCGCGGAGCTCATTGATACGGCTTTCATCGTCCTGCGCAAGAAACCTC
TTCAGTTCCTGCACTGGTACCACCATGTCACTGTGCTCCTCTTCACCTGG
TTCTGCTACACACACGAGAACCCGGGCATCATTTTTGTGGCCATGAATTA
TTCGGTGCACGCCATCATGTATGGCTACTACTTTCTGATGGCCGTCAGGG
TCCGACCGTCATGGCTCAAGCCTCAATTTATCACCCTCATGCAAATTTCG
CAGATGGTGGTGGGAGTGGCCACTGCGGCCTTTTACATCATGAAGATCCG
CGCCGGAGAAGAATGTGCGGTGGATCAGGACCTGCTTGTGGCATGCGGTG
TTATGTACTCGACGTACTTATACTTATTCTGTGAATTTGCCGTACGGAGG
TTTATTCTGGGCCCGAAGAAAGAGACAGCCCCTGGCAAGGCAGGGGTGAG
CAAGATGAAAGCCCAGTAG

protein sequence of rna2463

>rna2463-protein ID=rna2463-protein|Name=rna2463|organism=Nannochloropsis gaditana|type=polypeptide|length=643bp
MWRYGRTLIWNSHACKRFRGTLSIPPSKPSLKVPANPVTSQDHVKWPAVK
IFGGTQAQRQNVATRLLRIPEWHTKLKHEAITICLLTDDLFHESVATEAS
TINEQSIDLPSSTSSSSSPSGPLAEAFLKSDLIGTILTIFHVDAQEKRHL
IKVHGTDVVRSWAKDTLRQHLASMGSVGATGLILEPILMDLASQNSDETY
EDDALLAQALVKKNSLKTSVLLGTLIPERHAGKLVLLVFPRRETRPSEGL
HRVERLLLDYCRKNLITLQTYYLALDRAYSSDVEVRDREALRFKRVVAAL
PRGSLVLGEEAALDVLMEWTLQARCREGLLSPQPNAHACPTSDGSPTHPP
ALDVDMSTFYLALVNFFYGPPSDVLAGSHRLENLGPQDTILVTDDGHHPY
DDGHHGGSRDCYGLKSAGIGKGGTFGAAGVGAVPSIQAVVRGQNVAKMLR
KRLEEKFGSDQSPKVVCGDLQKQDLSAYSLVIIHSGNHPIEPSTYRRRLD
MCKNAGVAVSTPSQLKTWLHRPASLAAVLKVWPRSFKARVLGEGENPEDV
HGDRLRECDKQEENLAGGKQKDHITLKSQKRMIGTATHDESPWGHGFAKL
GDNTCSECGSWSCGECTKKRQQYAARLGKQHQHGLGLEWRDLY

mRNA from alignment at CM002459.1:444164..446204-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2463 ID=rna2463|Name=rna2463|organism=Nannochloropsis gaditana|type=mRNA|length=2041bp|location=Sequence derived from alignment at CM002459.1:444164..446204- (Nannochloropsis gaditana)
ATGTGGCGTTATGGCAGAACATTAATTTGGAATTCGCATGCCTGCAAACG
ATTCCGGGGCACATTGTCCATACCGCCGAGTAAACCTTCTTTGAAAGTGC
CTGCCAACCCTGTCACTTCGCAAGATCATGTAAAGTGGCCAGCTGTCAAA
ATCTTTGGCGGCACTCAGGCACAGCGTCAGAATGTTGCAACCCGTCTGTT
ACGAATTCCTGAGTGGCATACCAAGCTCAAGCATGAGGCGATCACCATCT
GCCTGCTGACTGATGACCTCTTTCATGAGTCTGTGGCTACGGAAGCTTCA
ACCATCAATGAACAGAGCATAGATCTCCCGTCCTCTACCTCATCCTCTTC
CTCGCCCTCGGGTCCCCTTGCGGAGGCCTTTTTAAAAAGCGATTTAATCG
GCACAATCCTCACCATCTTTCACGTGGACGCTCAGGAGAAACGTCATCTT
ATAAAGGTGCACGGCACGGACGTTGTCCGCTCCTGGGCCAAGGATACGCT
CCGCCAGCATTTGGCGTCTATGGGAAGCGTCGGGGCCACAGGGCTCATCC
TCGAACCAATCTTAATGGACTTGGCCTCGCAAAATTCGGACGAAACCTAC
GAAGATGATGCATTGCTGGCGCAAGCATTAGTGAAGAAGAATTCACTAAA
AACTAGCGTGCTCCTGGGTACATTGATACCCGAAAGACACGCTGGCAAAC
TTGTCTTGCTCGTATTTCCGCGAAGAGAGACTCGGCCGTCCGAGGGGTTG
CATCGAGTGGAACGTCTCCTCCTTGACTATTGCCGCAAAAACTTGATAAC
TTTGCAGACGTATTATCTGGCATTGGATCGAGCCTACTCCTCGGATGTGG
AGGTGAGAGACCGAGAAGCTCTGCGCTTCAAGCGCGTGGTGGCTGCCCTG
CCCCGGGGGTCCTTGGTGCTGGGCGAGGAAGCGGCATTGGATGTGCTCAT
GGAATGGACACTACAGGCGCGATGTCGCGAAGGGCTTCTTTCTCCCCAGC
CAAACGCTCATGCCTGTCCCACAAGCGACGGCAGTCCTACGCACCCCCCG
GCCTTAGACGTGGACATGTCGACATTTTACCTAGCTCTCGTCAATTTCTT
CTACGGGCCCCCCAGCGACGTCCTGGCAGGGAGCCATCGCCTGGAAAATC
TGGGTCCACAAGACACAATCCTTGTCACTGATGACGGGCACCATCCGTAC
GATGATGGGCACCACGGCGGGAGTCGTGATTGCTACGGCCTCAAAAGCGC
CGGAATTGGAAAGGGCGGGACTTTTGGCGCAGCCGGTGTGGGAGCTGTTC
CATCGATACAGGCAGTTGTGCGGGGGCAGAATGTGGCAAAAATGCTGCGA
AAACGGTTGGAGGAAAAATTTGGCTCCGACCAATCCCCGAAGGTTGTGTG
TGGAGATCTTCAAAAGCAAGACTTATCCGCGTACAGCTTAGTAATAATCC
ACTCTGGAAATCATCCAATCGAACCCAGCACGTATAGACGTAGACTGGAC
ATGTGCAAGAACGCAGGTGTAGCTGTCTCGACGCCTTCCCAACTCAAGAC
GTGGTTGCATCGACCGGCAAGTTTGGCAGCCGTCCTAAAGGTATGGCCGC
GTTCCTTCAAGGCCCGTGTGCTTGGAGAAGGAGAGAATCCCGAGGACGTG
CACGGAGATCGACTCAGAGAGTGTGACAAGCAAGAAGAGAACCTAGCTGG
AGGAAAACAAAAAGATCATATCACGTTGAAGTCGCAAAAGAGAATGATTG
GCACGGCGACACATGATGAAAGCCCATGGGGACATGGTTTCGCGAAATTG
GGCGACAACACTTGCAGTGAGTGCGGATCTTGGTCCTGCGGCGAATGCAC
CAAGGTAGGTGGTTGACAAGAAAGTGACTGTTAAAAAAATATCGTGCATG
AGATCAATCTTTGTATATTTTGAAGATCTTCCGAACTGCATTCTTCCTTT
TGACATATTTTAGAAGCGCCAGCAGTATGCTGCCAGGCTTGGCAAGCAGC
ATCAGCATGGCTTGGGACTTGAATGGCGCGACTTGTATTAA

Coding sequence (CDS) from alignment at CM002459.1:444164..446204-

>rna2463 ID=rna2463|Name=rna2463|organism=Nannochloropsis gaditana|type=CDS|length=3864bp|location=Sequence derived from alignment at CM002459.1:444164..446204- (Nannochloropsis gaditana)
AAGCGCCAGCAGTATGCTGCCAGGCTTGGCAAGCAGCATCAGCATGGCTT
GGGACTTGAATGGCGCGACTTGTATTAAATGTGGCGTTATGGCAGAACAT
TAATTTGGAATTCGCATGCCTGCAAACGATTCCGGGGCACATTGTCCATA
CCGCCGAGTAAACCTTCTTTGAAAGTGCCTGCCAACCCTGTCACTTCGCA
AGATCATGTAAAGTGGCCAGCTGTCAAAATCTTTGGCGGCACTCAGGCAC
AGCGTCAGAATGTTGCAACCCGTCTGTTACGAATTCCTGAGTGGCATACC
AAGCTCAAGCATGAGGCGATCACCATCTGCCTGCTGACTGATGACCTCTT
TCATGAGTCTGTGGCTACGGAAGCTTCAACCATCAATGAACAGAGCATAG
ATCTCCCGTCCTCTACCTCATCCTCTTCCTCGCCCTCGGGTCCCCTTGCG
GAGGCCTTTTTAAAAAGCGATTTAATCGGCACAATCCTCACCATCTTTCA
CGTGGACGCTCAGGAGAAACGTCATCTTATAAAGGTGCACGGCACGGACG
TTGTCCGCTCCTGGGCCAAGGATACGCTCCGCCAGCATTTGGCGTCTATG
GGAAGCGTCGGGGCCACAGGGCTCATCCTCGAACCAATCTTAATGGACTT
GGCCTCGCAAAATTCGGACGAAACCTACGAAGATGATGCATTGCTGGCGC
AAGCATTAGTGAAGAAGAATTCACTAAAAACTAGCGTGCTCCTGGGTACA
TTGATACCCGAAAGACACGCTGGCAAACTTGTCTTGCTCGTATTTCCGCG
AAGAGAGACTCGGCCGTCCGAGGGGTTGCATCGAGTGGAACGTCTCCTCC
TTGACTATTGCCGCAAAAACTTGATAACTTTGCAGACGTATTATCTGGCA
TTGGATCGAGCCTACTCCTCGGATGTGGAGGTGAGAGACCGAGAAGCTCT
GCGCTTCAAGCGCGTGGTGGCTGCCCTGCCCCGGGGGTCCTTGGTGCTGG
GCGAGGAAGCGGCATTGGATGTGCTCATGGAATGGACACTACAGGCGCGA
TGTCGCGAAGGGCTTCTTTCTCCCCAGCCAAACGCTCATGCCTGTCCCAC
AAGCGACGGCAGTCCTACGCACCCCCCGGCCTTAGACGTGGACATGTCGA
CATTTTACCTAGCTCTCGTCAATTTCTTCTACGGGCCCCCCAGCGACGTC
CTGGCAGGGAGCCATCGCCTGGAAAATCTGGGTCCACAAGACACAATCCT
TGTCACTGATGACGGGCACCATCCGTACGATGATGGGCACCACGGCGGGA
GTCGTGATTGCTACGGCCTCAAAAGCGCCGGAATTGGAAAGGGCGGGACT
TTTGGCGCAGCCGGTGTGGGAGCTGTTCCATCGATACAGGCAGTTGTGCG
GGGGCAGAATGTGGCAAAAATGCTGCGAAAACGGTTGGAGGAAAAATTTG
GCTCCGACCAATCCCCGAAGGTTGTGTGTGGAGATCTTCAAAAGCAAGAC
TTATCCGCGTACAGCTTAGTAATAATCCACTCTGGAAATCATCCAATCGA
ACCCAGCACGTATAGACGTAGACTGGACATGTGCAAGAACGCAGGTGTAG
CTGTCTCGACGCCTTCCCAACTCAAGACGTGGTTGCATCGACCGGCAAGT
TTGGCAGCCGTCCTAAAGGTATGGCCGCGTTCCTTCAAGGCCCGTGTGCT
TGGAGAAGGAGAGAATCCCGAGGACGTGCACGGAGATCGACTCAGAGAGT
GTGACAAGCAAGAAGAGAACCTAGCTGGAGGAAAACAAAAAGATCATATC
ACGTTGAAGTCGCAAAAGAGAATGATTGGCACGGCGACACATGATGAAAG
CCCATGGGGACATGGTTTCGCGAAATTGGGCGACAACACTTGCAGTGAGT
GCGGATCTTGGTCCTGCGGCGAATGCACCAAGAAGCGCCAGCAGTATGCT
GCCAGGCTTGGCAAGCAGCATCAGCATGGCTTGGGACTTGAATGGCGCGA
CTTGTATTAAATGTGGCGTTATGGCAGAACATTAATTTGGAATTCGCATG
CCTGCAAACGATTCCGGGGCACATTGTCCATACCGCCGAGTAAACCTTCT
TTGAAAGTGCCTGCCAACCCTGTCACTTCGCAAGATCATGTAAAGTGGCC
AGCTGTCAAAATCTTTGGCGGCACTCAGGCACAGCGTCAGAATGTTGCAA
CCCGTCTGTTACGAATTCCTGAGTGGCATACCAAGCTCAAGCATGAGGCG
ATCACCATCTGCCTGCTGACTGATGACCTCTTTCATGAGTCTGTGGCTAC
GGAAGCTTCAACCATCAATGAACAGAGCATAGATCTCCCGTCCTCTACCT
CATCCTCTTCCTCGCCCTCGGGTCCCCTTGCGGAGGCCTTTTTAAAAAGC
GATTTAATCGGCACAATCCTCACCATCTTTCACGTGGACGCTCAGGAGAA
ACGTCATCTTATAAAGGTGCACGGCACGGACGTTGTCCGCTCCTGGGCCA
AGGATACGCTCCGCCAGCATTTGGCGTCTATGGGAAGCGTCGGGGCCACA
GGGCTCATCCTCGAACCAATCTTAATGGACTTGGCCTCGCAAAATTCGGA
CGAAACCTACGAAGATGATGCATTGCTGGCGCAAGCATTAGTGAAGAAGA
ATTCACTAAAAACTAGCGTGCTCCTGGGTACATTGATACCCGAAAGACAC
GCTGGCAAACTTGTCTTGCTCGTATTTCCGCGAAGAGAGACTCGGCCGTC
CGAGGGGTTGCATCGAGTGGAACGTCTCCTCCTTGACTATTGCCGCAAAA
ACTTGATAACTTTGCAGACGTATTATCTGGCATTGGATCGAGCCTACTCC
TCGGATGTGGAGGTGAGAGACCGAGAAGCTCTGCGCTTCAAGCGCGTGGT
GGCTGCCCTGCCCCGGGGGTCCTTGGTGCTGGGCGAGGAAGCGGCATTGG
ATGTGCTCATGGAATGGACACTACAGGCGCGATGTCGCGAAGGGCTTCTT
TCTCCCCAGCCAAACGCTCATGCCTGTCCCACAAGCGACGGCAGTCCTAC
GCACCCCCCGGCCTTAGACGTGGACATGTCGACATTTTACCTAGCTCTCG
TCAATTTCTTCTACGGGCCCCCCAGCGACGTCCTGGCAGGGAGCCATCGC
CTGGAAAATCTGGGTCCACAAGACACAATCCTTGTCACTGATGACGGGCA
CCATCCGTACGATGATGGGCACCACGGCGGGAGTCGTGATTGCTACGGCC
TCAAAAGCGCCGGAATTGGAAAGGGCGGGACTTTTGGCGCAGCCGGTGTG
GGAGCTGTTCCATCGATACAGGCAGTTGTGCGGGGGCAGAATGTGGCAAA
AATGCTGCGAAAACGGTTGGAGGAAAAATTTGGCTCCGACCAATCCCCGA
AGGTTGTGTGTGGAGATCTTCAAAAGCAAGACTTATCCGCGTACAGCTTA
GTAATAATCCACTCTGGAAATCATCCAATCGAACCCAGCACGTATAGACG
TAGACTGGACATGTGCAAGAACGCAGGTGTAGCTGTCTCGACGCCTTCCC
AACTCAAGACGTGGTTGCATCGACCGGCAAGTTTGGCAGCCGTCCTAAAG
GTATGGCCGCGTTCCTTCAAGGCCCGTGTGCTTGGAGAAGGAGAGAATCC
CGAGGACGTGCACGGAGATCGACTCAGAGAGTGTGACAAGCAAGAAGAGA
ACCTAGCTGGAGGAAAACAAAAAGATCATATCACGTTGAAGTCGCAAAAG
AGAATGATTGGCACGGCGACACATGATGAAAGCCCATGGGGACATGGTTT
CGCGAAATTGGGCGACAACACTTGCAGTGAGTGCGGATCTTGGTCCTGCG
GCGAATGCACCAAG

Synonyms

Publications