EWM28238.1, cds2455 (CDS) Nannochloropsis gaditana

Overview
NameEWM28238.1
Unique Namecds2455
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:444351..446204 -
Alignment locationCM002459.1:444164..444241 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28238.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g103.9169.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:444351..446204 -
CM002459.1supercontigCM002459.1:444164..444241 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM28238.1 vs. NCBI_GenBank
Match: gi|585110583|gb|EWM28238.1| (hypothetical protein Naga_100004g103 [Nannochloropsis gaditana])

HSP 1 Score: 1327.77 bits (3435), Expect = 0.000e+0
Identity = 643/643 (100.00%), Postives = 643/643 (100.00%), Query Frame = 0 
Query:    1 MWRYGRTLIWNSHACKRFRGTLSIPPSKPSLKVPANPVTSQDHVKWPAVKIFGGTQAQRQNVATRLLRIPEWHTKLKHEAITICLLTDDLFHESVATEASTINEQSIDLPSSTSSSSSPSGPLAEAFLKSDLIGTILTIFHVDAQEKRHLIKVHGTDVVRSWAKDTLRQHLASMGSVGATGLILEPILMDLASQNSDETYEDDALLAQALVKKNSLKTSVLLGTLIPERHAGKLVLLVFPRRETRPSEGLHRVERLLLDYCRKNLITLQTYYLALDRAYSSDVEVRDREALRFKRVVAALPRGSLVLGEEAALDVLMEWTLQARCREGLLSPQPNAHACPTSDGSPTHPPALDVDMSTFYLALVNFFYGPPSDVLAGSHRLENLGPQDTILVTDDGHHPYDDGHHGGSRDCYGLKSAGIGKGGTFGAAGVGAVPSIQAVVRGQNVAKMLRKRLEEKFGSDQSPKVVCGDLQKQDLSAYSLVIIHSGNHPIEPSTYRRRLDMCKNAGVAVSTPSQLKTWLHRPASLAAVLKVWPRSFKARVLGEGENPEDVHGDRLRECDKQEENLAGGKQKDHITLKSQKRMIGTATHDESPWGHGFAKLGDNTCSECGSWSCGECTKKRQQYAARLGKQHQHGLGLEWRDLY 643
            MWRYGRTLIWNSHACKRFRGTLSIPPSKPSLKVPANPVTSQDHVKWPAVKIFGGTQAQRQNVATRLLRIPEWHTKLKHEAITICLLTDDLFHESVATEASTINEQSIDLPSSTSSSSSPSGPLAEAFLKSDLIGTILTIFHVDAQEKRHLIKVHGTDVVRSWAKDTLRQHLASMGSVGATGLILEPILMDLASQNSDETYEDDALLAQALVKKNSLKTSVLLGTLIPERHAGKLVLLVFPRRETRPSEGLHRVERLLLDYCRKNLITLQTYYLALDRAYSSDVEVRDREALRFKRVVAALPRGSLVLGEEAALDVLMEWTLQARCREGLLSPQPNAHACPTSDGSPTHPPALDVDMSTFYLALVNFFYGPPSDVLAGSHRLENLGPQDTILVTDDGHHPYDDGHHGGSRDCYGLKSAGIGKGGTFGAAGVGAVPSIQAVVRGQNVAKMLRKRLEEKFGSDQSPKVVCGDLQKQDLSAYSLVIIHSGNHPIEPSTYRRRLDMCKNAGVAVSTPSQLKTWLHRPASLAAVLKVWPRSFKARVLGEGENPEDVHGDRLRECDKQEENLAGGKQKDHITLKSQKRMIGTATHDESPWGHGFAKLGDNTCSECGSWSCGECTKKRQQYAARLGKQHQHGLGLEWRDLY
Sbjct:    1 MWRYGRTLIWNSHACKRFRGTLSIPPSKPSLKVPANPVTSQDHVKWPAVKIFGGTQAQRQNVATRLLRIPEWHTKLKHEAITICLLTDDLFHESVATEASTINEQSIDLPSSTSSSSSPSGPLAEAFLKSDLIGTILTIFHVDAQEKRHLIKVHGTDVVRSWAKDTLRQHLASMGSVGATGLILEPILMDLASQNSDETYEDDALLAQALVKKNSLKTSVLLGTLIPERHAGKLVLLVFPRRETRPSEGLHRVERLLLDYCRKNLITLQTYYLALDRAYSSDVEVRDREALRFKRVVAALPRGSLVLGEEAALDVLMEWTLQARCREGLLSPQPNAHACPTSDGSPTHPPALDVDMSTFYLALVNFFYGPPSDVLAGSHRLENLGPQDTILVTDDGHHPYDDGHHGGSRDCYGLKSAGIGKGGTFGAAGVGAVPSIQAVVRGQNVAKMLRKRLEEKFGSDQSPKVVCGDLQKQDLSAYSLVIIHSGNHPIEPSTYRRRLDMCKNAGVAVSTPSQLKTWLHRPASLAAVLKVWPRSFKARVLGEGENPEDVHGDRLRECDKQEENLAGGKQKDHITLKSQKRMIGTATHDESPWGHGFAKLGDNTCSECGSWSCGECTKKRQQYAARLGKQHQHGLGLEWRDLY 643
The following BLAST results are available for this feature:
BLAST of EWM28238.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110583|gb|EWM28238.1|0.000e+0100.00hypothetical protein Naga_100004g103 [Nannochlorop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2463rna2463Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications