rna246, rna246 (mRNA) Nannochloropsis gaditana

Overview
Namerna246
Unique Namerna246
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1146
Alignment locationCM002455.1:624892..626513 +

Link to JBrowse

Properties
Property NameValue
ProductMitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Orig transcript idgnl|cribi|Naga_100210g6.8068.mrna
Orig protein idgnl|cribi|Naga_100210g6.8068
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:624892..626513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100210g6gene235Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna246rna246-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30420.1cds246Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna246 ID=rna246|Name=rna246|organism=Nannochloropsis gaditana|type=mRNA|length=1146bp
AACGTTTAACCACTCCTTTTCACGTGTCAGGAAGTACGGGGCCTTGACGT
ATGTGGCGGCGCCATGCGTAATATACTACGGATTGTTTTTTGTTTTCCGC
AACGAAACTTGAGCAGCACTTGACTGCAAGTTAACCTTCATAACGAAGAC
GAACAGACATCTAAAAGAGTAGCAGGGGTGGTGTGTAAAAGAACATCGTC
ACTCCTGCCTACGGTGCGGGCGGCAACATCACAATCGCCCAAACCTCCCC
ATCTTCAAAAAATGGTATGGCCCACGTCGTGGCAAATACCTTGTCATGCG
TCTTGCTTAGTACTGTATATCCACAGAATGGTCTTTAAACTCTCTTACTT
TGCTTTTCGCTCAGGCGCTGGGCGGTGGATGTATACTCTGGTATTGAAAT
GCGGGAGACTACGATCCGGCCCGGCATATCGTATGATAGCTCTGTCTGCA
TCAGGGGAGTCTCCGTTCATAGACTTTTCGAATTGCAGAGACAATACGTT
GGACTCTTCTTCCATTCGTGTTCTACCCGACGTCATAACAATTGAAGAAG
AGGCTCGCCTTGTTGCGGAGTTGGAAGGAAACATGCGTCGACGGCGGTAC
GTTGCCAATCATTGGGACTCAGTCATAGAGAGGTACCGCGAGGTGGAAAA
GCGGGCATGGATTGACCCACTTAATGCAAAAATAGCGCAGCGAATCAAGA
GCGTCATCCTTCAGACATTGAATAAATCATTGGCGACGCGATTTTTGCCC
GTCCACGTCATTGATCTTGCCGAGGACGGCTTCATAAAGCCTCACGTTGA
CTCGAGCAAATTCAGCGGAGGCCTCGTCTGCGGCTTATCCTTGTGCTCTT
CCGCCATCATGCAGCTCAAAGGCGACGTGGAGCAGGGCCAAAACCCGGAT
TCAATCGTCCGCCTGCTACTCCGGCCTCGCTCTTTGTACATCCTGTGTGG
AAACGCTCGGTACAGGTACGCCCATGAGATCTTGGCCACACGTCCAGAGG
GGGAGGAGCGTTGGGTCGACGGACGGAGAGTGAAGCGGTCGCGCCGCTTG
TCTCTCATCTTCAGGGACGAAAGGGAGGATCAAGGGAGGAGAGAAGAAGC
ATGTGAAACGGACATGAAGAAAAAGCAACACGAGTGACGCCAAGCT
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protein sequence of rna246

>rna246-protein ID=rna246-protein|Name=rna246|organism=Nannochloropsis gaditana|type=polypeptide|length=253bp
MSWGRGGGGKETEFDWSGDGNGGVDVQGDGFRDPFDGGSGADSSGWNSNG
TDDAMAWGTDNEGATDFDGMGDERGQQAQPRQSIRPQTQPSQAPWKGQKG
PQQGMSQAETRRRLGYGKCVVDFLVNGVQACALGSIIGVFSGYHEAYSAG
ARGKTLVLYVLSRAKSSAFSFGAWIGSYSGSKCAFITLRDGKRDALNAFL
AGGVAGALPAIASRNPRTILFSALGSAGFMGAMESLEGLFAGESKGQERG
SAQ
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mRNA from alignment at CM002455.1:624892..626513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna246 ID=rna246|Name=rna246|organism=Nannochloropsis gaditana|type=mRNA|length=1622bp|location=Sequence derived from alignment at CM002455.1:624892..626513+ (Nannochloropsis gaditana)
AGTGACGATGTTCTTTTACACACCACCCCTGCTACTCTTTTAGATGTCTG
TTCGTCTTCGTTATGAAGGTTAACTTGCAGTCAAGTGCTGCTCAAGTTTC
GTTGCGGAAAACAAAAAACAATCCGTAGTATATTACGCATGGCGCCGCCA
CATACGTCAAGGCCCCGTACTTCCTGACACGTGAAAAGGAGTGGTTAAAC
GTTTTATGCACTAAACCATAAGGATCACCTAACGCACCTGCAGGTACATT
GCTATATATTTCATGTCGTGGGgacgaggcggtggcggtaaAGAAACAGA
ATTTGATTGGAGTGGTGATGGTAACGGCGGAGTGGACGTTCAAGGAGACG
GCTTTCGAGACCCTTTCGATGGAGGTTCCGGCGCGGATTCATCAGGCTGG
AATTCGAATGGCACAGATGATGCAATGGCATGGGGCACGGACAATGAGGG
GGCGACTGATTTCGATGGAATGGGTGATGAACGTGGGCAACAGGCGCAGC
CCCGTCAATCAATCAGGCCGCAGACCCAGCCGTCTCAGGCACCTTGGAAA
GGTCAGAAAGGTCCACAGCAAGGCATGAGTCAGGCTGAGACCCGACGGCG
CCTTGGATATGGAAAATGTGTCGTTGATTTTCTTGTCAATGGAGTGCAAG
CTTGTGCTCTTGGGTCCATAATCGGGGTACGTATAGAGAATGATTATTTC
AGGTGGAGCATTTGAAATAAGAGAACGCAAATAAGTACATCATGTACGGC
GAAATGCCTCCGATAAAGTCCTTGCCCACTCACCTGCTCGTAACGATGTG
GCAGGTTTTTTCGGGGTATCATGAGGCGTATAGTGCAGGAGCAAGGGGCA
AAACCCTGGTACTCTACGTCCTGTCTCGAGCCAAATCAtccgctttctct
ttcgGCGCCTGGATTGGTTCATATTCAGGAAGCAAGTGCGCGTTCATTAC
GTTGCGCGATGGCAAGAGAGATGCTCTGAACGGTACGTAGAGGTTGTTTA
CTGAGCTCTGTGAACAGGCCCAGTCCCTTTAAAGCGAGCTATTTTCCGCC
GTCGACCCTCTCGCACAGCAAGTGCTTATCAGTCTTTTAAAAATGcattc
catcccttccgATAGCTTTTTTAGCAGGAGGAGTAGCAGGAGCTTTACCT
GCCATCGCCTCCCGGAACCCCCGAACAATTCTTTTCTCAGCCTTGGGATC
TGCAGGTTTTATGGGAGCCATGGAGAGCTTAGAGGGTTTGTTTGCGGGGG
AAAGTAAAGgacaagaaaggggaagcgcGCAATAGCATATGGTTTCTTTC
CAAAGCACATAAGGTAGGTTCGTACATGTTTTTGGAAGCCGCGGCGATCA
CAAAAGCGGTGTTTTACGGCCAAGCGGTCGctgagaagaaagaaaggcgt
ACATAtacaagaaaagaaggatgtTAAATGTTCTGTCGTAGTGCTGCTGA
TACCTCAGAGGCACCTGCTCTTTCTGGCCTGAACACGAGCAAAGTTATTC
TGATGTCAGCTTTTTCTTGCAAGCACAACGCCGACATAAATTGGTCTTTC
GTTTGAATATCTCCAACAACACACAAAAGGACCTCTTTACACTCTTATTT
GAAGCGAATAATATGTGTCAAC
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Coding sequence (CDS) from alignment at CM002455.1:624892..626513+

>rna246 ID=rna246|Name=rna246|organism=Nannochloropsis gaditana|type=CDS|length=2286bp|location=Sequence derived from alignment at CM002455.1:624892..626513+ (Nannochloropsis gaditana)
ATGTCGTGGGgacgaggcggtggcggtaaAGAAACAGAATTTGATTGGAG
TGGTGATGGTAACGGCGGAGTGGACGTTCAAGGAGACGGCTTTCGAGACC
CTTTCGATGGAGGTTCCGGCGCGGATTCATCAGGCTGGAATTCGAATGGC
ACAGATGATGCAATGGCATGGGGCACGGACAATGAGGGGGCGACTGATTT
CGATGGAATGGGTGATGAACGTGGGCAACAGGCGCAGCCCCGTCAATCAA
TCAGGCCGCAGACCCAGCCGTCTCAGGCACCTTGGAAAGGTCAGAAAGGT
CCACAGCAAGGCATGAGTCAGGCTGAGACCCGACGGCGCCTTGGATATGG
AAAATGTGTCGTTGATTTTCTTGTCAATGGAGTGCAAGCTTGTGCTCTTG
GGTCCATAATCGGGGTTTTTTCGGGGTATCATGAGGCGTATAGTGCAGGA
GCAAGGGGCAAAACCCTGGTACTCTACGTCCTGTCTCGAGCCAAATCAtc
cgctttctctttcgGCGCCTGGATTGGTTCATATTCAGGAAGCAAGTGCG
CGTTCATTACGTTGCGCGATGGCAAGAGAGATGCTCTGAACGCTTTTTTA
GCAGGAGGAGTAGCAGGAGCTTTACCTGCCATCGCCTCCCGGAACCCCCG
AACAATTCTTTTCTCAGCCTTGGGATCTGCAGGTTTTATGGGAGCCATGG
AGAGCTTAGAGGGTTTGTTTGCGGGGGAAAGTAAAGgacaagaaagggga
agcgcGCAATAGATGTCGTGGGgacgaggcggtggcggtaaAGAAACAGA
ATTTGATTGGAGTGGTGATGGTAACGGCGGAGTGGACGTTCAAGGAGACG
GCTTTCGAGACCCTTTCGATGGAGGTTCCGGCGCGGATTCATCAGGCTGG
AATTCGAATGGCACAGATGATGCAATGGCATGGGGCACGGACAATGAGGG
GGCGACTGATTTCGATGGAATGGGTGATGAACGTGGGCAACAGGCGCAGC
CCCGTCAATCAATCAGGCCGCAGACCCAGCCGTCTCAGGCACCTTGGAAA
GGTCAGAAAGGTCCACAGCAAGGCATGAGTCAGGCTGAGACCCGACGGCG
CCTTGGATATGGAAAATGTGTCGTTGATTTTCTTGTCAATGGAGTGCAAG
CTTGTGCTCTTGGGTCCATAATCGGGGTTTTTTCGGGGTATCATGAGGCG
TATAGTGCAGGAGCAAGGGGCAAAACCCTGGTACTCTACGTCCTGTCTCG
AGCCAAATCAtccgctttctctttcgGCGCCTGGATTGGTTCATATTCAG
GAAGCAAGTGCGCGTTCATTACGTTGCGCGATGGCAAGAGAGATGCTCTG
AACGCTTTTTTAGCAGGAGGAGTAGCAGGAGCTTTACCTGCCATCGCCTC
CCGGAACCCCCGAACAATTCTTTTCTCAGCCTTGGGATCTGCAGGTTTTA
TGGGAGCCATGGAGAGCTTAGAGGGTTTGTTTGCGGGGGAAAGTAAAGga
caagaaaggggaagcgcGCAATAGATGTCGTGGGgacgaggcggtggcgg
taaAGAAACAGAATTTGATTGGAGTGGTGATGGTAACGGCGGAGTGGACG
TTCAAGGAGACGGCTTTCGAGACCCTTTCGATGGAGGTTCCGGCGCGGAT
TCATCAGGCTGGAATTCGAATGGCACAGATGATGCAATGGCATGGGGCAC
GGACAATGAGGGGGCGACTGATTTCGATGGAATGGGTGATGAACGTGGGC
AACAGGCGCAGCCCCGTCAATCAATCAGGCCGCAGACCCAGCCGTCTCAG
GCACCTTGGAAAGGTCAGAAAGGTCCACAGCAAGGCATGAGTCAGGCTGA
GACCCGACGGCGCCTTGGATATGGAAAATGTGTCGTTGATTTTCTTGTCA
ATGGAGTGCAAGCTTGTGCTCTTGGGTCCATAATCGGGGTTTTTTCGGGG
TATCATGAGGCGTATAGTGCAGGAGCAAGGGGCAAAACCCTGGTACTCTA
CGTCCTGTCTCGAGCCAAATCAtccgctttctctttcgGCGCCTGGATTG
GTTCATATTCAGGAAGCAAGTGCGCGTTCATTACGTTGCGCGATGGCAAG
AGAGATGCTCTGAACGCTTTTTTAGCAGGAGGAGTAGCAGGAGCTTTACC
TGCCATCGCCTCCCGGAACCCCCGAACAATTCTTTTCTCAGCCTTGGGAT
CTGCAGGTTTTATGGGAGCCATGGAGAGCTTAGAGGGTTTGTTTGCGGGG
GAAAGTAAAGgacaagaaaggggaagcgcGCAATAG
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Synonyms
Publications