EWM30420.1, cds246 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM30420.1
Unique Name	cds246
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002455.1:625154..625567 +
Alignment location	CM002455.1:625696..625873 +
Alignment location	CM002455.1:626007..626176 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM30420.1
Product	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Orig transcript id	gnl\|cribi\|Naga_100210g6.8068.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:625154..625567 +
CM002455.1	supercontig	CM002455.1:625696..625873 +
CM002455.1	supercontig	CM002455.1:626007..626176 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0016043	cellular component organization

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0005739	mitochondrion

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Tim17/Tim22/Tim23/PMP24

Homology

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BLAST of EWM30420.1 vs. NCBI_GenBank
Match: gi|585113081|gb|EWM30420.1| (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 506.908 bits (1304), Expect = 0.000e+0
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0

Query:    1 MSWGRGGGGKETEFDWSGDGNGGVDVQGDGFRDPFDGGSGADSSGWNSNGTDDAMAWGTDNEGATDFDGMGDERGQQAQPRQSIRPQTQPSQAPWKGQKGPQQGMSQAETRRRLGYGKCVVDFLVNGVQACALGSIIGVFSGYHEAYSAGARGKTLVLYVLSRAKSSAFSFGAWIGSYSGSKCAFITLRDGKRDALNAFLAGGVAGALPAIASRNPRTILFSALGSAGFMGAMESLEGLFAGESKGQERGSAQ 253
            MSWGRGGGGKETEFDWSGDGNGGVDVQGDGFRDPFDGGSGADSSGWNSNGTDDAMAWGTDNEGATDFDGMGDERGQQAQPRQSIRPQTQPSQAPWKGQKGPQQGMSQAETRRRLGYGKCVVDFLVNGVQACALGSIIGVFSGYHEAYSAGARGKTLVLYVLSRAKSSAFSFGAWIGSYSGSKCAFITLRDGKRDALNAFLAGGVAGALPAIASRNPRTILFSALGSAGFMGAMESLEGLFAGESKGQERGSAQ
Sbjct:    1 MSWGRGGGGKETEFDWSGDGNGGVDVQGDGFRDPFDGGSGADSSGWNSNGTDDAMAWGTDNEGATDFDGMGDERGQQAQPRQSIRPQTQPSQAPWKGQKGPQQGMSQAETRRRLGYGKCVVDFLVNGVQACALGSIIGVFSGYHEAYSAGARGKTLVLYVLSRAKSSAFSFGAWIGSYSGSKCAFITLRDGKRDALNAFLAGGVAGALPAIASRNPRTILFSALGSAGFMGAMESLEGLFAGESKGQERGSAQ 253

The following BLAST results are available for this feature:

BLAST of EWM30420.1 vs. NCBI_GenBank

BLAST of EWM30420.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585113081\|gb\|EWM30420.1\|	0.000e+0	100.00	Mitochondrial inner membrane translocase subunit T...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna246	rna246	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications