rna2456, rna2456 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2456
Unique Name	rna2456
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1986
Alignment location	CM002459.1:421484..423456 +

Link to JBrowse

Properties


Property Name	Value
Product	methionine aminopeptidase 2b
Orig transcript id	gnl\|cribi\|Naga_100004g92.9195.mrna
Orig protein id	gnl\|cribi\|Naga_100004g92.9195
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:421484..423456 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g92	gene2349	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2456	rna2456-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28264.1	cds2448	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:421484..423456+
coding sequence from alignment at CM002459.1:421484..423456+

mRNA sequence

>rna2456 ID=rna2456|Name=rna2456|organism=Nannochloropsis gaditana|type=mRNA|length=1986bp
ATGGCCGATGCTGCGAATAAATCAAGCCTTCCTGGCTCAAATACCCTTCA
ATCAAGTACAAATACCGCTGAAAATGCTAGTGCAACAATTAAGGCGGCAG
CCACTCTGCCCTCGATTCCTTCGGCAGTGAAAAAACTTCCGCTGTTGCTT
CGCCAAGCCCGGGAACACGGCTTGCTTTCCCAGTACGAGGCGGCCATCCA
ACTTCACCGAAAGGCGCAGCAAGTACTGCAGGAGTTTGCAAACGTAACCT
TGAAATCGGATGATCAGGAGTGGCGTCGAAATAGATACCTCAAGCTGGCC
AAGGAGCTCAAGGCTGAGGAAGCTTTGGTAAATGAGCTGCAAAACACCCT
ACGTTCCATTCCTCCCGTTCCGCCCAGTAATAAGCCCCGGCCTCCATCTC
CCCCTCCGCCGCTTTCGGCCGCTGCCGCAGCCAGCAAGAGGGAAGCAGCG
GCTCTCGCAGCATCACAGTTGCCTGATTCTGAAATTGCACGCGAACCCGG
AGTTTGGGAAGCACCAACGCCGCCGACCACATCCCGCCGCTCCAAAGCCT
CTGTGGGCGGGAGAGAGGGCGGTATGCGCACACACCGGCAATCTCTTGGC
GTTGGGGGAAAAGAAACCGCCGAAGGGAGGCGTGTCGCAGCTGCTTCGAC
CAGAAAATTAGGTTCAAACCGGCGGACGTCACAGGCAGGTGCCCGTCCGG
CCACTGTAACAAGCTCGTCGGCGGCGGCTGTGGCTGGGCGCGCCGAGGGT
ACCCGGACACGCACCTCGGTCAAACCTCCGGTTCCCGTGACTGTGAATAC
CGCTTCTTCTAGCTCCGGTGCGAGGCGTAACGCGGGGCGTGGCGTCAATG
CTACTGCAGTGGACACTGCGGGCCCCTACGCCACCCTTCAGAAGCACAAC
TCGAGCAATTCTGCGAATAGCAGGGCAGAGGACACGCCCCCCCTGGCTTT
GAATGGAAAACCAAGATACAGCGATGTAGCCCGGGAGGCAGGATGGGCAG
ACACGGAGCTTATTGAAAGCATCGAGCGGGAGATCGTGGAGCAGGGAGTG
AATGTCTCCTGGGACTCTATCGCTGATTTACAAGAGGCGAAACAGCTTTT
GCAAGAAGCAGTTGTATTGCCATTGTGGATGCCTGACTATTTCAAGGGCA
TTCGGCGGCCATGGAAGGGGGTCTTGTTGTTCGGGCCTCCAGGGACGGGG
AAGACCATGCTGGCCAAGGCTGTTGCCACGGAGTGTGCCACCACGTTCTT
CAATGTCTCCGCGTCCACTCTCGGCTCTAAGTACCGAGGTGACAGCGAAA
AAATGGTTCGAATCCTTTTTGAAATGGCGAGATACTACGCCCCATCCACG
CTCTTCTTCGACGAGATCGATTCTATCGCCGGGTCGCGCGGGGGCAGCGG
CGAGCACGAGGCGAGTCGGCGCGTCAAGACAGAACTCATGGTTCAGATGG
ATGGTGTAGCGGACGCCTCAGCCACGACCAGCGTAGATGATAACGAGGAG
GGAGCGGTGGACGAGGAGGAGAGGCCTGGAAGCAAAACAGTCATCGTCCT
GGCAGCCACCAACATGCCGTGGGATCTAGATGATGCTTTGCGACGGCGAA
TGGAGAAGAGAATCTATATTTCGCTGCCTACCGAAGAAGGACGGAAAGAA
TTATTCAGAATCAATATGAGGGATATTGAGGTGGGGGATGATTTGGATTT
GGATACCCTAGCTCAGCAAACGGAAGGATACTCTGGTGCAGACATTGCGA
ACGTGTGTCGAGACGCCTCGATGATGAGTGTGCGGCGGGTGATGGAGGAA
GCAAGGAAACAGGGACTACATGGCTTGGAGATTCAGAAGGCATTGATGGC
AAACCGAGACAAACTCCAGGCGTCGATGGTCACGCAAGCTGATTTCTTGT
TTGCGTTATCGAAAATCAGCAAGTCCGTGGGCTCAGGGGATTTGCAGCGG
TACAACGACTGGATGCAGGAATTCGGCAGTGTGTAG

protein sequence of rna2456

>rna2456-protein ID=rna2456-protein|Name=rna2456|organism=Nannochloropsis gaditana|type=polypeptide|length=557bp
MGPRVAASQGSYSRVLSGTVGLHKFGMTTTEVKAVHAEAKVQEGAEEEEE
EDDDQGGAAEGQGDATTSNGGTANKKKKKKKKKAKSAGTGSAPSETSAAG
EECDVEHASGDNDNDAEEDGDGAITAEDAIKKKKKKKKKGVKGASGVSGA
VPGQLHPATGVPGKKAPGRGVSGFTDSYIRYGQTEPPTIPVASLFAEGHF
PKGEIQPHPGDMNTFRITSEEKRAAERLEADLYDKVRSASEVHRQVRKYA
QSFIEPGIKLIDMCERLENKNRELIQEAGLERGVGFPTGCSLNHVAAHYT
PNAGDETVLQYGDVMKVDFGCQIEGRIIDSAFTVSFDPTYDNLLEAVREA
TDTGIRTAGIDVRLCDVGEAIQETMESYEVTIDGTTYPVKSIRNLNGHSI
GPYEIHAGKSVPIVKGGDATKMEEGEFYAIETFGSTGRAFVQEDLECSHY
MKAFEAPHVPLRMASAKRLLSHIDRTFKTLAFCRRWLERPDGGSAFIHGQ
KGKQEKYLGALKNLCDVGIVVPYPPLVDIKGSYVAQYEHTILLRPTCKEV
LSRGDDF

mRNA from alignment at CM002459.1:421484..423456+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2456 ID=rna2456|Name=rna2456|organism=Nannochloropsis gaditana|type=mRNA|length=1973bp|location=Sequence derived from alignment at CM002459.1:421484..423456+ (Nannochloropsis gaditana)
ATGGTGGAACATCGAGCCACTTTTGGCGaccctcccgcctcatccCGTCT
GATGGATGGGGCCTCGCGTTGCCGCCAGTCAGGGGTCTTACTCACGCGTC
CTCTCTGGCACAGTGGGCCTGCATAAATTTGGAATGACAACAACAGAAGT
CAAGGCGGTGCACGCGGAAGCCAAAGTTcaggagggggcagaagaggagg
aagaggaggacgacgaccagggaggagcggcagaGGGCCAAGGGGATGCG
ACTACAAGCAACGGCGGCACGGCaaacaagaagaagaagaaaaagaagaa
gaaggcaaaATCTGCGGGCACAGGTTCTGCTCCTTCTGAAACTTCAGCCG
CTGGCGAAGGTTAGTGATGGAATGAAGCAGGAACTCTAAAAATGTTTCCA
AGAGAAGATACTCACAGTCTTGCATGTCCTTGTTCTATTTTCTCCGATGA
ACACGGAAAATTGCGACAAACAGAATGCGATGTGGAACACGCTAGTGGAG
ACAATGATAATGATGctgaggaagatggggatgGGGCTATTACCGCGGAG
GATGCGatcaagaagaaaaagaagaagaagaagaaaggagtgaAAGGGGC
AAGCGGTGTTTCCGGCGCCGTGCCTGGACAGCTCCACCCGGCGACGGGAG
TGCCAGGCAAAAAAGCGCCGGGAAGAGGTGTCTCAGGCTTCACAGATAGC
TACATCCGGTACGGACAGACAGAGCCGCCCACCATACCTGTAGCTTCCCT
TTTTGCCGAGGGCCATTTCCCTAAGGGCGAGATCCAGCCTCATCCCGGTG
ATATGAACACCTTTCGTATCACCTCtgaggagaagcgggcagCGGAGAGA
CTGGAGGCTGATCTTTACGATAAGGTTCGATCGGCCTCGGAGGTGCATCG
GCAAGTTCGTAAGTATGCGCAGAGCTTCATCGAGCCGGGCATCAAGTTGA
TTGATATGTGCGAACGCTTGGAGAACAAGAACAGGGAATTAATCCAGGAG
GCTGGCTTGGAGCGAGGCGTAGGCTTCCCCACGGGTTGTTCATTGAATCA
CGTTGCCGCGCACTACACGCCAAATGCCGGGGACGAGACTGTACTGCAGT
ATGGCGACGTTATGAAGGTTGATTTCGGATGTCAGATAGAGGGGCGAATC
ATCGACAGTGCTTTCACTGTCTCTTTTGATCCGACCTACGACAACCTTCT
GGAGGCTGTTCGGGAGGCAACGGACACGGGAATTCGGACAGCAGGGATTG
ATGTGCGCCTTTGTGACGTGGGAGAGGCGATACAAGAGACGATGGAGTCG
TACGAGGTAACCATTGATGGGACCACGTACCCGGTAAAATCCATCCGAAA
TCTAAACGGACACAGCATCGGTCCATATGAAATCCACGCGGGGAAGAGCG
TTCCGATAGTGAAAGGGGGCGACGCGaccaagatggaggagggtgagtTC
TACGCGATCGAGACATTTGGGTCCACGGGTCGGGCCTTCGTACAGGAGGA
TTTGGAATGCAGCCACTACATGAAAGCCTTTGAGGCTCCCCATGTCCCGT
TGCGAATGGCTTCGGCTAAACGGCTTTTGTCGCACATAGACCGGACCTTC
AAGACTCTGGCTTTTTGCCGTCGCTGGCTGGAGCGCCCGGACGGGGGATC
CGCGTTTATCCACGGGCAGAAGGGCAAACAAGAAAAATATCTGGGGGCTT
TGAAGAACCTTTGCGACGTTGGCATTGTCGTACCTTATCCGCCGCTAGTG
GATATCAAGGGTAGCTACGTGGCGCAGTACGAGCACACCATTTTGCTCCG
ACCAACGTGCAAAGAAGTGCTCTCTCGAGGGGACGACTTCTGAGACGATG
AAAATGGCAAGCATTGAGGGCAGGACTGGGGAAATGCAGGGCAATAAGAC
ACGATGATGACGTATGCTTCAGTCCCTCTGAACTTATTTTTATTTGCTGA
AAGGAGTTGTCACAGTATTTTTT

Coding sequence (CDS) from alignment at CM002459.1:421484..423456+

>rna2456 ID=rna2456|Name=rna2456|organism=Nannochloropsis gaditana|type=CDS|length=3348bp|location=Sequence derived from alignment at CM002459.1:421484..423456+ (Nannochloropsis gaditana)
ATGGGGCCTCGCGTTGCCGCCAGTCAGGGGTCTTACTCACGCGTCCTCTC
TGGCACAGTGGGCCTGCATAAATTTGGAATGACAACAACAGAAGTCAAGG
CGGTGCACGCGGAAGCCAAAGTTcaggagggggcagaagaggaggaagag
gaggacgacgaccagggaggagcggcagaGGGCCAAGGGGATGCGACTAC
AAGCAACGGCGGCACGGCaaacaagaagaagaagaaaaagaagaagaagg
caaaATCTGCGGGCACAGGTTCTGCTCCTTCTGAAACTTCAGCCGCTGGC
GAAGAATGCGATGTGGAACACGCTAGTGGAGACAATGATAATGATGctga
ggaagatggggatgGGGCTATTACCGCGGAGGATGCGatcaagaagaaaa
agaagaagaagaagaaaggagtgaAAGGGGCAAGCGGTGTTTCCGGCGCC
GTGCCTGGACAGCTCCACCCGGCGACGGGAGTGCCAGGCAAAAAAGCGCC
GGGAAGAGGTGTCTCAGGCTTCACAGATAGCTACATCCGGTACGGACAGA
CAGAGCCGCCCACCATACCTGTAGCTTCCCTTTTTGCCGAGGGCCATTTC
CCTAAGGGCGAGATCCAGCCTCATCCCGGTGATATGAACACCTTTCGTAT
CACCTCtgaggagaagcgggcagCGGAGAGACTGGAGGCTGATCTTTACG
ATAAGGTTCGATCGGCCTCGGAGGTGCATCGGCAAGTTCGTAAGTATGCG
CAGAGCTTCATCGAGCCGGGCATCAAGTTGATTGATATGTGCGAACGCTT
GGAGAACAAGAACAGGGAATTAATCCAGGAGGCTGGCTTGGAGCGAGGCG
TAGGCTTCCCCACGGGTTGTTCATTGAATCACGTTGCCGCGCACTACACG
CCAAATGCCGGGGACGAGACTGTACTGCAGTATGGCGACGTTATGAAGGT
TGATTTCGGATGTCAGATAGAGGGGCGAATCATCGACAGTGCTTTCACTG
TCTCTTTTGATCCGACCTACGACAACCTTCTGGAGGCTGTTCGGGAGGCA
ACGGACACGGGAATTCGGACAGCAGGGATTGATGTGCGCCTTTGTGACGT
GGGAGAGGCGATACAAGAGACGATGGAGTCGTACGAGGTAACCATTGATG
GGACCACGTACCCGGTAAAATCCATCCGAAATCTAAACGGACACAGCATC
GGTCCATATGAAATCCACGCGGGGAAGAGCGTTCCGATAGTGAAAGGGGG
CGACGCGaccaagatggaggagggtgagtTCTACGCGATCGAGACATTTG
GGTCCACGGGTCGGGCCTTCGTACAGGAGGATTTGGAATGCAGCCACTAC
ATGAAAGCCTTTGAGGCTCCCCATGTCCCGTTGCGAATGGCTTCGGCTAA
ACGGCTTTTGTCGCACATAGACCGGACCTTCAAGACTCTGGCTTTTTGCC
GTCGCTGGCTGGAGCGCCCGGACGGGGGATCCGCGTTTATCCACGGGCAG
AAGGGCAAACAAGAAAAATATCTGGGGGCTTTGAAGAACCTTTGCGACGT
TGGCATTGTCGTACCTTATCCGCCGCTAGTGGATATCAAGGGTAGCTACG
TGGCGCAGTACGAGCACACCATTTTGCTCCGACCAACGTGCAAAGAAGTG
CTCTCTCGAGGGGACGACTTCTGAATGGGGCCTCGCGTTGCCGCCAGTCA
GGGGTCTTACTCACGCGTCCTCTCTGGCACAGTGGGCCTGCATAAATTTG
GAATGACAACAACAGAAGTCAAGGCGGTGCACGCGGAAGCCAAAGTTcag
gagggggcagaagaggaggaagaggaggacgacgaccagggaggagcggc
agaGGGCCAAGGGGATGCGACTACAAGCAACGGCGGCACGGCaaacaaga
agaagaagaaaaagaagaagaaggcaaaATCTGCGGGCACAGGTTCTGCT
CCTTCTGAAACTTCAGCCGCTGGCGAAGAATGCGATGTGGAACACGCTAG
TGGAGACAATGATAATGATGctgaggaagatggggatgGGGCTATTACCG
CGGAGGATGCGatcaagaagaaaaagaagaagaagaagaaaggagtgaAA
GGGGCAAGCGGTGTTTCCGGCGCCGTGCCTGGACAGCTCCACCCGGCGAC
GGGAGTGCCAGGCAAAAAAGCGCCGGGAAGAGGTGTCTCAGGCTTCACAG
ATAGCTACATCCGGTACGGACAGACAGAGCCGCCCACCATACCTGTAGCT
TCCCTTTTTGCCGAGGGCCATTTCCCTAAGGGCGAGATCCAGCCTCATCC
CGGTGATATGAACACCTTTCGTATCACCTCtgaggagaagcgggcagCGG
AGAGACTGGAGGCTGATCTTTACGATAAGGTTCGATCGGCCTCGGAGGTG
CATCGGCAAGTTCGTAAGTATGCGCAGAGCTTCATCGAGCCGGGCATCAA
GTTGATTGATATGTGCGAACGCTTGGAGAACAAGAACAGGGAATTAATCC
AGGAGGCTGGCTTGGAGCGAGGCGTAGGCTTCCCCACGGGTTGTTCATTG
AATCACGTTGCCGCGCACTACACGCCAAATGCCGGGGACGAGACTGTACT
GCAGTATGGCGACGTTATGAAGGTTGATTTCGGATGTCAGATAGAGGGGC
GAATCATCGACAGTGCTTTCACTGTCTCTTTTGATCCGACCTACGACAAC
CTTCTGGAGGCTGTTCGGGAGGCAACGGACACGGGAATTCGGACAGCAGG
GATTGATGTGCGCCTTTGTGACGTGGGAGAGGCGATACAAGAGACGATGG
AGTCGTACGAGGTAACCATTGATGGGACCACGTACCCGGTAAAATCCATC
CGAAATCTAAACGGACACAGCATCGGTCCATATGAAATCCACGCGGGGAA
GAGCGTTCCGATAGTGAAAGGGGGCGACGCGaccaagatggaggagggtg
agtTCTACGCGATCGAGACATTTGGGTCCACGGGTCGGGCCTTCGTACAG
GAGGATTTGGAATGCAGCCACTACATGAAAGCCTTTGAGGCTCCCCATGT
CCCGTTGCGAATGGCTTCGGCTAAACGGCTTTTGTCGCACATAGACCGGA
CCTTCAAGACTCTGGCTTTTTGCCGTCGCTGGCTGGAGCGCCCGGACGGG
GGATCCGCGTTTATCCACGGGCAGAAGGGCAAACAAGAAAAATATCTGGG
GGCTTTGAAGAACCTTTGCGACGTTGGCATTGTCGTACCTTATCCGCCGC
TAGTGGATATCAAGGGTAGCTACGTGGCGCAGTACGAGCACACCATTTTG
CTCCGACCAACGTGCAAAGAAGTGCTCTCTCGAGGGGACGACTTCTGA

Synonyms

Publications