rna2453, rna2453 (mRNA) Nannochloropsis gaditana

Overview
Namerna2453
Unique Namerna2453
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length515
Alignment locationCM002459.1:416616..418133 +

Link to JBrowse

Properties
Property NameValue
Product3 -5 exonuclease domain-containing protein
Orig transcript idgnl|cribi|Naga_100004g89.9094.mrna
Orig protein idgnl|cribi|Naga_100004g89.9094
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:416616..418133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g89gene2346Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2453rna2453-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28163.1cds2445Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2453 ID=rna2453|Name=rna2453|organism=Nannochloropsis gaditana|type=mRNA|length=515bp
CGCCTTGCGCCTTAGGGCTAGTTCTCACGGTGTAATCGACTGGGTTGCGA
TCCTCCCTTTGATAAGGCATCACATCCATTGTATCTTCTATATTACAGAG
CAGATACGAGAGCGGACACACGTAGGGAGAAGGCCCCACCTGGCACACGT
AGCCGGCATCGATCATGGCAGCCGACCGATTCAATATCAATCGGAGCTGG
GAGCATCTTCAAAATAAATATGTCGGGACAGGTCATCCCGACCTGACCAA
ACACGAATGGTTGACGAACCAGCATCGGGACACCTACGCTACTCATTTGG
GTCATCACGACCAGCTTGCCTACATTGCAGTGGCGCAGAACGACGCGGTA
GGTCGTGTGCGCTACCAGCTCCTCGAGAAAATGCTACAGCCCTGCGGTCC
CCCCCCGGCAGCAAAAGATGATGAGGATGACTAGGAAGGGAGTGGGTTCT
CGTGAAGAACGTCTGGCGCGTGTAGAGTAAATTTAAAAGAAAGTAAAAAA
AAACACTACATTTCG
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protein sequence of rna2453

>rna2453-protein ID=rna2453-protein|Name=rna2453|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MRRVSPLLGWVLAQSRQWTGSAAFVSSLRALVSYPRVCLRPVVPHAAVSS
TCLRRRSTTTSSTVMAAFEADKSTVSSGTGTPPTVATISSISPFINRHDV
TVEVHSGRGPSLQRLRVHVLPLESDKLEVLLSQVYDRVAQRGGIVGMDAE
WQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERII
KVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKE
FLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQV
GQPPCPSSFCKRLVPQYWTRRVGDGHHAKIKRSPPDGRWEVQQQQEREQQ
KQRSSRDGMTY
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mRNA from alignment at CM002459.1:416616..418133+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2453 ID=rna2453|Name=rna2453|organism=Nannochloropsis gaditana|type=mRNA|length=1518bp|location=Sequence derived from alignment at CM002459.1:416616..418133+ (Nannochloropsis gaditana)
ATGTAAACTCCAGGGGGGTTATGCCACACATTTGACCAGCTCGTCAGAGT
CGAGGTTTTAGGTTGTCTCACATTTGGTTCTTCTCATTGCGTGTGTTAGG
GAAATCCGCTAGCTATTTTCGAGCCTCTGACTTTTTGACCGGTCCCATCA
CGGTTTTCCCACCACGCTAGGAGCTTGTGGACGTCGGTGACGGGATGAGA
AGGGTGTCGCCTCTACTTGGATGGGTGCTTGCACAAAGTCGGCAATGGAC
TGGTTCGGCAGCATTTGTGTCGTCACTTCGAGCCTTGGTGTCATACCCGC
GTGTTTGCTTGAGACCTGTCGTCCCTCATGCTGCTGTCAGCTCGACATGT
CTCAGGAGACGAAGCACGACGACGAGCTCAACGGTGATGGCGGCGTTTGA
GGCAGACAAAAGCACAGTTTCATCCGGCACCGGCACCCCACCAACAGTGG
CAACGATCAGTTCCATATCTCCCTTCATAAATAGGCACGATGTTACCGTG
GAGGTACACTCCGGTCGAGGTCCTTCTCTGCAGCGATTGCGCGTTCACGT
CCTGCCCCTGGAATCGGACAAGTTGGAGGTACTCTTATCACAAGTTTACG
ACCGTGTGGCTCAAAGGGGTGGAATTGTGGGTATGGACGCAGAATGGCAG
CCTGAGGTCCTCCGCTTCGAGCGCAACCCCGTTGCTTTGCTACAGCTggc
ttgggaggaggacatctTTCTGGTCCGACTGCAACACATGCGGGGAAAGG
TGCCGGCGTCGCTCCATCGACTTTTGGCCGACGAGCGTATCATTAAGGTT
GGGTGTAATATCGGTGGGGATGCCAAGCGGCTGTTAAAGGACTACGCACT
GGACACGAGAGGGCACGTGGACCTGAGAGAGGTCACCCAGGGCCTGGGGC
TCGTCCAGTGCAAGCGTCGCAGCATGGCGTGGCTGGCCAAGGAATTTTTG
AGGATGGACATGGACAAATCGCAGCAGTGCTCCGATTGGGGAAACCTGGA
GCTGTCGGCGGAGCAGATTAAGTACTCGAGCATCGACGCCTGGGTGGCGC
CGGCCATCGTCGGGCATCTCTTCCGTCGCTACAAGTCCCAGGTCGGCcag
cccccttgcccctcctccttctgcaagCGGCTGGTGCCTCAGTATTGGAC
GCGGCGGGTTGGCGACGGGCATCATGCAAAGATAAAGAGATCACCTCCCG
ATGGGAGGTGGGAAgtgcagcaacagcaggagcgggagcagcagaagcaa
CGAAGTAGTAGGGATGGGATGACATATTAATTGAGGAGCTGTCGACTTAC
GGACAGTCGCCGGTGCATGCATGTGGTGACAGATATAATGACGCCCGTAA
TGTGCCCCTCTACGCGGAGATTCGCTTAAATGTTTCGCTCCGTCGCATGC
TTGTGTAGGATCGTGTGATTTAGAGATATGTCTAAAAGTAACAAAGTACC
TTCGAAACGCGCCAAACTGTATAATTTGCCTTCCTCAGATTGTCAGTGGT
AAGTCCAAATTATGCACA
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Coding sequence (CDS) from alignment at CM002459.1:416616..418133+

>rna2453 ID=rna2453|Name=rna2453|organism=Nannochloropsis gaditana|type=CDS|length=1086bp|location=Sequence derived from alignment at CM002459.1:416616..418133+ (Nannochloropsis gaditana)
ATGAGAAGGGTGTCGCCTCTACTTGGATGGGTGCTTGCACAAAGTCGGCA
ATGGACTGGTTCGGCAGCATTTGTGTCGTCACTTCGAGCCTTGGTGTCAT
ACCCGCGTGTTTGCTTGAGACCTGTCGTCCCTCATGCTGCTGTCAGCTCG
ACATGTCTCAGGAGACGAAGCACGACGACGAGCTCAACGGTGATGGCGGC
GTTTGAGGCAGACAAAAGCACAGTTTCATCCGGCACCGGCACCCCACCAA
CAGTGGCAACGATCAGTTCCATATCTCCCTTCATAAATAGGCACGATGTT
ACCGTGGAGGTACACTCCGGTCGAGGTCCTTCTCTGCAGCGATTGCGCGT
TCACGTCCTGCCCCTGGAATCGGACAAGTTGGAGGTACTCTTATCACAAG
TTTACGACCGTGTGGCTCAAAGGGGTGGAATTGTGGGTATGGACGCAGAA
TGGCAGCCTGAGGTCCTCCGCTTCGAGCGCAACCCCGTTGCTTTGCTACA
GCTggcttgggaggaggacatctTTCTGGTCCGACTGCAACACATGCGGG
GAAAGGTGCCGGCGTCGCTCCATCGACTTTTGGCCGACGAGCGTATCATT
AAGGTTGGGTGTAATATCGGTGGGGATGCCAAGCGGCTGTTAAAGGACTA
CGCACTGGACACGAGAGGGCACGTGGACCTGAGAGAGGTCACCCAGGGCC
TGGGGCTCGTCCAGTGCAAGCGTCGCAGCATGGCGTGGCTGGCCAAGGAA
TTTTTGAGGATGGACATGGACAAATCGCAGCAGTGCTCCGATTGGGGAAA
CCTGGAGCTGTCGGCGGAGCAGATTAAGTACTCGAGCATCGACGCCTGGG
TGGCGCCGGCCATCGTCGGGCATCTCTTCCGTCGCTACAAGTCCCAGGTC
GGCcagcccccttgcccctcctccttctgcaagCGGCTGGTGCCTCAGTA
TTGGACGCGGCGGGTTGGCGACGGGCATCATGCAAAGATAAAGAGATCAC
CTCCCGATGGGAGGTGGGAAgtgcagcaacagcaggagcgggagcagcag
aagcaaCGAAGTAGTAGGGATGGGATGACATATTAA
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Synonyms
Publications