EWM28163.1, cds2445 (CDS) Nannochloropsis gaditana

Overview
NameEWM28163.1
Unique Namecds2445
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:416810..417895 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28163.1
Product3 -5 exonuclease domain-containing protein
Orig transcript idgnl|cribi|Naga_100004g89.9094.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:416810..417895 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR0025623'-5'_exonuclease_dom
Homology
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|585110508|gb|EWM28163.1| (3 -5 exonuclease domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0
Query:    1 MRRVSPLLGWVLAQSRQWTGSAAFVSSLRALVSYPRVCLRPVVPHAAVSSTCLRRRSTTTSSTVMAAFEADKSTVSSGTGTPPTVATISSISPFINRHDVTVEVHSGRGPSLQRLRVHVLPLESDKLEVLLSQVYDRVAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPSSFCKRLVPQYWTRRVGDGHHAKIKRSPPDGRWEVQQQQEREQQKQRSSRDGMTY 361
            MRRVSPLLGWVLAQSRQWTGSAAFVSSLRALVSYPRVCLRPVVPHAAVSSTCLRRRSTTTSSTVMAAFEADKSTVSSGTGTPPTVATISSISPFINRHDVTVEVHSGRGPSLQRLRVHVLPLESDKLEVLLSQVYDRVAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPSSFCKRLVPQYWTRRVGDGHHAKIKRSPPDGRWEVQQQQEREQQKQRSSRDGMTY
Sbjct:    1 MRRVSPLLGWVLAQSRQWTGSAAFVSSLRALVSYPRVCLRPVVPHAAVSSTCLRRRSTTTSSTVMAAFEADKSTVSSGTGTPPTVATISSISPFINRHDVTVEVHSGRGPSLQRLRVHVLPLESDKLEVLLSQVYDRVAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPSSFCKRLVPQYWTRRVGDGHHAKIKRSPPDGRWEVQQQQEREQQKQRSSRDGMTY 361          
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|330789845|ref|XP_003283009.1| (hypothetical protein DICPUDRAFT_146576 [Dictyostelium purpureum] >gi|325087081|gb|EGC40462.1| hypothetical protein DICPUDRAFT_146576 [Dictyostelium purpureum])

HSP 1 Score: 101.293 bits (251), Expect = 9.842e-20
Identity = 62/188 (32.98%), Postives = 102/188 (54.26%), Query Frame = 0
Query:  144 IVGMDAEW--QPEVLRFERNP--VALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQ--QCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPS---SFCKRLVPQYWTRRV 322
            I+G DAEW  Q +    E  P  VAL+QL+ + D++L+++  M   +P SL ++L D R+IKVG  I  DA  +   +++ T+G VDL  + +   L   +   +A LA   L  ++DK+   +CS W N  L++EQ+ Y++IDAW+   I   ++  YKS    P  P    + C+  +   +  +V
Sbjct:  171 IIGFDAEWSNQNQYQECEGYPHKVALIQLSSKTDVYLIQISQM-PTIPQSLEQILVDPRLIKVGVAISQDAATIFSSFSIVTKGCVDLVPIGR---LTNYQGNGLASLALNVLNANIDKNNLIRCSHWENKNLTSEQVMYAAIDAWIGREIFETMYYTYKSSKIDPNEPDLVFTLCRPFINTQFKVKV 354          
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1082431209|gb|OFX77232.1| (hypothetical protein A2X19_05735 [Bacteroidetes bacterium GWE2_39_28] >gi|1082470043|gb|OFY15156.1| hypothetical protein A2X16_08365 [Bacteroidetes bacterium GWF2_39_10] >gi|1082575467|gb|OFZ07085.1| hypothetical protein A2322_09020 [Bacteroidetes bacterium RIFOXYB2_FULL_39_7] >gi|1082579835|gb|OFZ10976.1| hypothetical protein A2465_00545 [Bacteroidetes bacterium RIFOXYC2_FULL_39_11])

HSP 1 Score: 95.5153 bits (236), Expect = 1.460e-19
Identity = 61/162 (37.65%), Postives = 84/162 (51.85%), Query Frame = 0
Query:  144 IVGMDAEWQPEVL-RFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPP 304
            I+G D E +P      +RN VALLQLA  E  ++ RL H  G +P  L ++L+  +IIKVG  +  D K L        RG VDL+ +  G G++    R MA +    L + + KSQQ S+W   ELS  QI Y++IDAW+   +   L    K  V   P
Sbjct:   46 IIGFDTETKPSFTANTKRNSVALLQLAGVERAYIFRL-HNTG-IPPELAKILSTTKIIKVGAAVNDDIKSLQVHTKFIARGFVDLQTIASGWGIMDKSVRKMAAI---ILGIRVSKSQQLSNWETAELSPAQINYAAIDAWICLKMYLKLLSTPKPDVKNLP 202          
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|743896141|ref|XP_011041345.1| (PREDICTED: Werner Syndrome-like exonuclease [Populus euphratica])

HSP 1 Score: 96.2857 bits (238), Expect = 1.835e-19
Identity = 69/238 (28.99%), Postives = 119/238 (50.00%), Query Frame = 0
Query:   69 EADKSTVSSGTGT---PPT-----VATISSISPFINRHDVTVEVHSGRGPSLQRLRVHVLPLESDKL-EVLLSQVYDRV------AQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREV-TQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAI 288
            +++  T+S G  T   PP+      ++ ++++  I  H +    H+         R+H L   +  +    +++   ++      AQR  IVG+D EW+P   R  +NPVA LQL+   D  + +L H    +P SLH  L+D     VG  I  D K+L +DY L     VDLR +  + LG  + K   +  LA+E L  +++K ++   S W N+ L+  Q++Y+ +DA+++  I
Sbjct:    8 KSNAGTLSLGCSTIKRPPSAINHYTSSATTMAISIENHHLPYATHNLYDVKFFDDRIHTLVTHTSSIVNTWIAETQQKLLQNNNHAQRPLIVGLDVEWRPNRFRRIKNPVATLQLSAGNDCLIFQLLHCLTGIPQSLHDFLSDMTYTFVGVGIESDVKKLTEDYELSVGNAVDLRGLAAEKLGDSRWKNSGVKRLAREVLGKEIEKPKRITLSRWDNVWLTPAQVQYACLDAFLSCKI 245          
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1005473712|ref|XP_015773657.1| (PREDICTED: zinc finger protein 28-like isoform X2 [Acropora digitifera])

HSP 1 Score: 100.138 bits (248), Expect = 2.288e-19
Identity = 67/209 (32.06%), Postives = 110/209 (52.63%), Query Frame = 0
Query:  117 VHVLPLESDKLEV------------LLSQVYDRVAQRGGIVGMDAEWQPEVLRFE----RNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPS 307
             H+LP  ++ +EV            L + V D  AQ    VG D EW+P++ R +     N  A+LQLA E    + +L ++ G+ P  L  +L DERI+KVG  I  D  +L KD  L   G VD + + + +G+++ ++  +  LAK  L ++++K +    S+W N  L+ +QI Y+++DAW+   I    +R  K+  G+  C S
Sbjct:  318 THLLPYPAEGVEVVYTTDPIEVEAWLRNNVIDCSAQ---AVGFDIEWKPQLKRKKDGGIENKTAVLQLATESSCLVFQLYNL-GRPPNDLVSVLKDERILKVGSGILQDVTKLKKDTGLKCIGLVDTQNLAKEVGMLESQKLGLKALAKYLLGIELEKPKLVTRSNWENFPLTVKQIHYAALDAWIGLKI----YRSMKAMQGKSTCKS 518          
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1005473709|ref|XP_015773656.1| (PREDICTED: zinc finger protein 28-like isoform X1 [Acropora digitifera])

HSP 1 Score: 100.138 bits (248), Expect = 2.341e-19
Identity = 67/209 (32.06%), Postives = 110/209 (52.63%), Query Frame = 0
Query:  117 VHVLPLESDKLEV------------LLSQVYDRVAQRGGIVGMDAEWQPEVLRFE----RNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPS 307
             H+LP  ++ +EV            L + V D  AQ    VG D EW+P++ R +     N  A+LQLA E    + +L ++ G+ P  L  +L DERI+KVG  I  D  +L KD  L   G VD + + + +G+++ ++  +  LAK  L ++++K +    S+W N  L+ +QI Y+++DAW+   I    +R  K+  G+  C S
Sbjct:  328 THLLPYPAEGVEVVYTTDPIEVEAWLRNNVIDCSAQ---AVGFDIEWKPQLKRKKDGGIENKTAVLQLATESSCLVFQLYNL-GRPPNDLVSVLKDERILKVGSGILQDVTKLKKDTGLKCIGLVDTQNLAKEVGMLESQKLGLKALAKYLLGIELEKPKLVTRSNWENFPLTVKQIHYAALDAWIGLKI----YRSMKAMQGKSTCKS 528          
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1009529707|ref|XP_015926356.1| (exonuclease 3'-5' domain-containing protein 2-like [Parasteatoda tepidariorum])

HSP 1 Score: 99.7525 bits (247), Expect = 2.719e-19
Identity = 61/162 (37.65%), Postives = 92/162 (56.79%), Query Frame = 0
Query:  138 VAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEED-IFLVRLQHMRG-KVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQ--QCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRR 295
            V +   ++G+D EW  +  R  RN V+LLQLA       L+RL  +    +P  +  +L +E I+KVG  I  DA +L +DY L+ RG +DLR +   L  ++ K   +  L+ E L +D++KS+  +CSDW   EL+ EQIKY+S D  VA  I   + +R
Sbjct:   54 VLKHSKVIGLDCEWVNDEGR--RNSVSLLQLANNSGYCILIRLCCLPVWLIPEGISNILLNENILKVGVGIYDDANKLFEDYGLEVRGFIDLRFLANDLEELREKNLGLKSLSHELLNIDLNKSKRLRCSDWDAPELTDEQIKYASEDVIVAAQIFFEIKKR 213          
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|224139642|ref|XP_002323207.1| (hypothetical protein POPTR_0016s02850g [Populus trichocarpa] >gi|222867837|gb|EEF04968.1| hypothetical protein POPTR_0016s02850g [Populus trichocarpa])

HSP 1 Score: 93.5893 bits (231), Expect = 9.806e-19
Identity = 64/204 (31.37%), Postives = 100/204 (49.02%), Query Frame = 0
Query:   95 INRHDVTVEVHSGRGPSLQRLRVHVLPLE-SDKLEVLLSQVYDRVAQRGG------IVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREV-TQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAI 288
            I  H +  E H+         R+H L    S  +   +++   ++ Q         IVG+D EW+P   R   NPVA LQL+   D  + +L H    +P SLH  L+D     VG  I GD K+L +DY L     VDLR +  + LG  + K   +  LA+E L  +++K ++   S W N  L+  Q++Y+ +DA+++  I
Sbjct:    5 IENHHLPYETHNLYDVKFFDDRIHTLVTHTSSFVNTWIAETQQKLLQNNNHAHRPLIVGLDVEWRPNRFRRIENPVATLQLSAGNDCLIFQLLHCPTGIPQSLHDFLSDMTYTFVGVGIEGDVKKLTEDYELSVGNAVDLRGLAAEKLGDSRWKNSGVKRLAREVLGKEIEKPKRITLSRWDNPWLTPAQVQYACLDAFLSCKI 208          
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1035914976|gb|OAY44569.1| (hypothetical protein MANES_08G161800 [Manihot esculenta])

HSP 1 Score: 93.5893 bits (231), Expect = 1.074e-18
Identity = 58/195 (29.74%), Postives = 102/195 (52.31%), Query Frame = 0
Query:   98 HDVTVEVHSGRGPSLQRLRVHVLPLESDKL-EVLLSQVYDRVAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREV-TQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAI 288
            + +T + H+    +    ++H L   +  L +  +++    + Q   IVG+D EW+P   R   NP+A LQL  +    + +L +    +P SL   L  E  + VG  IG D ++L++DY L  R  VDLR +  + LG+ + K   +  L KE L  +++K ++   S W N  L+ +Q++Y+ +DA+V+  I
Sbjct:    8 YQLTNDTHNLYDITFFTDQIHTLVTNTPSLVDQWITETQQLLHQNPTIVGLDVEWRPNFNRHIENPIATLQLCIDHKCLIFQLIY-SPTIPQSLVEFLLSENFLFVGVGIGSDVEKLVEDYGLSVRNTVDLRNLAAEKLGMRELKNAGLKNLVKEVLGKEINKPKRVTMSRWDNPWLTPDQVQYACLDAFVSSEI 201          
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1213774863|emb|SBW09222.1| (3'-5' exonuclease family protein [uncultured delta proteobacterium])

HSP 1 Score: 93.2041 bits (230), Expect = 1.249e-18
Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 0
Query:  144 IVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVA 285
            ++G D E +P   +   +P  L+Q+A  + ++L++L  +    P  +   LAD+  IK G  IG D + L K Y     G VDLR++ +   +     R +  LA  FL M + K+ QCS+WGN ELSA+QI Y++ DAWV+
Sbjct:   50 LLGFDTESKPIFRKGVISPPTLMQIACSDIVYLIQLTWLPFNEP--MASFLADQERIKTGVAIGDDIRMLNKVYPFTAAGLVDLRDIAR---IKNLATRGLRTLAANFLHMRISKNAQCSNWGNKELSAQQITYAATDAWVS 186          
The following BLAST results are available for this feature:
BLAST of EWM28163.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110508|gb|EWM28163.1|0.000e+0100.003 -5 exonuclease domain-containing protein [Nannoc... [more]
gi|330789845|ref|XP_003283009.1|9.842e-2032.98hypothetical protein DICPUDRAFT_146576 [Dictyostel... [more]
gi|1082431209|gb|OFX77232.1|1.460e-1937.65hypothetical protein A2X19_05735 [Bacteroidetes ba... [more]
gi|743896141|ref|XP_011041345.1|1.835e-1928.99PREDICTED: Werner Syndrome-like exonuclease [Popul... [more]
gi|1005473712|ref|XP_015773657.1|2.288e-1932.06PREDICTED: zinc finger protein 28-like isoform X2 ... [more]
gi|1005473709|ref|XP_015773656.1|2.341e-1932.06PREDICTED: zinc finger protein 28-like isoform X1 ... [more]
gi|1009529707|ref|XP_015926356.1|2.719e-1937.65exonuclease 3'-5' domain-containing protein 2-like... [more]
gi|224139642|ref|XP_002323207.1|9.806e-1931.37hypothetical protein POPTR_0016s02850g [Populus tr... [more]
gi|1035914976|gb|OAY44569.1|1.074e-1829.74hypothetical protein MANES_08G161800 [Manihot escu... [more]
gi|1213774863|emb|SBW09222.1|1.249e-1836.623'-5' exonuclease family protein [uncultured delta... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2453rna2453Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications