EWM28163.1, cds2445 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|585110508|gb|EWM28163.1| (3 -5 exonuclease domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0 Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0
Query: 1 MRRVSPLLGWVLAQSRQWTGSAAFVSSLRALVSYPRVCLRPVVPHAAVSSTCLRRRSTTTSSTVMAAFEADKSTVSSGTGTPPTVATISSISPFINRHDVTVEVHSGRGPSLQRLRVHVLPLESDKLEVLLSQVYDRVAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPSSFCKRLVPQYWTRRVGDGHHAKIKRSPPDGRWEVQQQQEREQQKQRSSRDGMTY 361
MRRVSPLLGWVLAQSRQWTGSAAFVSSLRALVSYPRVCLRPVVPHAAVSSTCLRRRSTTTSSTVMAAFEADKSTVSSGTGTPPTVATISSISPFINRHDVTVEVHSGRGPSLQRLRVHVLPLESDKLEVLLSQVYDRVAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPSSFCKRLVPQYWTRRVGDGHHAKIKRSPPDGRWEVQQQQEREQQKQRSSRDGMTY
Sbjct: 1 MRRVSPLLGWVLAQSRQWTGSAAFVSSLRALVSYPRVCLRPVVPHAAVSSTCLRRRSTTTSSTVMAAFEADKSTVSSGTGTPPTVATISSISPFINRHDVTVEVHSGRGPSLQRLRVHVLPLESDKLEVLLSQVYDRVAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPSSFCKRLVPQYWTRRVGDGHHAKIKRSPPDGRWEVQQQQEREQQKQRSSRDGMTY 361
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|330789845|ref|XP_003283009.1| (hypothetical protein DICPUDRAFT_146576 [Dictyostelium purpureum] >gi|325087081|gb|EGC40462.1| hypothetical protein DICPUDRAFT_146576 [Dictyostelium purpureum]) HSP 1 Score: 101.293 bits (251), Expect = 9.842e-20 Identity = 62/188 (32.98%), Postives = 102/188 (54.26%), Query Frame = 0
Query: 144 IVGMDAEW--QPEVLRFERNP--VALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQ--QCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPS---SFCKRLVPQYWTRRV 322
I+G DAEW Q + E P VAL+QL+ + D++L+++ M +P SL ++L D R+IKVG I DA + +++ T+G VDL + + L + +A LA L ++DK+ +CS W N L++EQ+ Y++IDAW+ I ++ YKS P P + C+ + + +V
Sbjct: 171 IIGFDAEWSNQNQYQECEGYPHKVALIQLSSKTDVYLIQISQM-PTIPQSLEQILVDPRLIKVGVAISQDAATIFSSFSIVTKGCVDLVPIGR---LTNYQGNGLASLALNVLNANIDKNNLIRCSHWENKNLTSEQVMYAAIDAWIGREIFETMYYTYKSSKIDPNEPDLVFTLCRPFINTQFKVKV 354
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1082431209|gb|OFX77232.1| (hypothetical protein A2X19_05735 [Bacteroidetes bacterium GWE2_39_28] >gi|1082470043|gb|OFY15156.1| hypothetical protein A2X16_08365 [Bacteroidetes bacterium GWF2_39_10] >gi|1082575467|gb|OFZ07085.1| hypothetical protein A2322_09020 [Bacteroidetes bacterium RIFOXYB2_FULL_39_7] >gi|1082579835|gb|OFZ10976.1| hypothetical protein A2465_00545 [Bacteroidetes bacterium RIFOXYC2_FULL_39_11]) HSP 1 Score: 95.5153 bits (236), Expect = 1.460e-19 Identity = 61/162 (37.65%), Postives = 84/162 (51.85%), Query Frame = 0
Query: 144 IVGMDAEWQPEVL-RFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPP 304
I+G D E +P +RN VALLQLA E ++ RL H G +P L ++L+ +IIKVG + D K L RG VDL+ + G G++ R MA + L + + KSQQ S+W ELS QI Y++IDAW+ + L K V P
Sbjct: 46 IIGFDTETKPSFTANTKRNSVALLQLAGVERAYIFRL-HNTG-IPPELAKILSTTKIIKVGAAVNDDIKSLQVHTKFIARGFVDLQTIASGWGIMDKSVRKMAAI---ILGIRVSKSQQLSNWETAELSPAQINYAAIDAWICLKMYLKLLSTPKPDVKNLP 202
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|743896141|ref|XP_011041345.1| (PREDICTED: Werner Syndrome-like exonuclease [Populus euphratica]) HSP 1 Score: 96.2857 bits (238), Expect = 1.835e-19 Identity = 69/238 (28.99%), Postives = 119/238 (50.00%), Query Frame = 0
Query: 69 EADKSTVSSGTGT---PPT-----VATISSISPFINRHDVTVEVHSGRGPSLQRLRVHVLPLESDKL-EVLLSQVYDRV------AQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREV-TQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAI 288
+++ T+S G T PP+ ++ ++++ I H + H+ R+H L + + +++ ++ AQR IVG+D EW+P R +NPVA LQL+ D + +L H +P SLH L+D VG I D K+L +DY L VDLR + + LG + K + LA+E L +++K ++ S W N+ L+ Q++Y+ +DA+++ I
Sbjct: 8 KSNAGTLSLGCSTIKRPPSAINHYTSSATTMAISIENHHLPYATHNLYDVKFFDDRIHTLVTHTSSIVNTWIAETQQKLLQNNNHAQRPLIVGLDVEWRPNRFRRIKNPVATLQLSAGNDCLIFQLLHCLTGIPQSLHDFLSDMTYTFVGVGIESDVKKLTEDYELSVGNAVDLRGLAAEKLGDSRWKNSGVKRLAREVLGKEIEKPKRITLSRWDNVWLTPAQVQYACLDAFLSCKI 245
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1005473712|ref|XP_015773657.1| (PREDICTED: zinc finger protein 28-like isoform X2 [Acropora digitifera]) HSP 1 Score: 100.138 bits (248), Expect = 2.288e-19 Identity = 67/209 (32.06%), Postives = 110/209 (52.63%), Query Frame = 0
Query: 117 VHVLPLESDKLEV------------LLSQVYDRVAQRGGIVGMDAEWQPEVLRFE----RNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPS 307
H+LP ++ +EV L + V D AQ VG D EW+P++ R + N A+LQLA E + +L ++ G+ P L +L DERI+KVG I D +L KD L G VD + + + +G+++ ++ + LAK L ++++K + S+W N L+ +QI Y+++DAW+ I +R K+ G+ C S
Sbjct: 318 THLLPYPAEGVEVVYTTDPIEVEAWLRNNVIDCSAQ---AVGFDIEWKPQLKRKKDGGIENKTAVLQLATESSCLVFQLYNL-GRPPNDLVSVLKDERILKVGSGILQDVTKLKKDTGLKCIGLVDTQNLAKEVGMLESQKLGLKALAKYLLGIELEKPKLVTRSNWENFPLTVKQIHYAALDAWIGLKI----YRSMKAMQGKSTCKS 518
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1005473709|ref|XP_015773656.1| (PREDICTED: zinc finger protein 28-like isoform X1 [Acropora digitifera]) HSP 1 Score: 100.138 bits (248), Expect = 2.341e-19 Identity = 67/209 (32.06%), Postives = 110/209 (52.63%), Query Frame = 0
Query: 117 VHVLPLESDKLEV------------LLSQVYDRVAQRGGIVGMDAEWQPEVLRFE----RNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRRYKSQVGQPPCPS 307
H+LP ++ +EV L + V D AQ VG D EW+P++ R + N A+LQLA E + +L ++ G+ P L +L DERI+KVG I D +L KD L G VD + + + +G+++ ++ + LAK L ++++K + S+W N L+ +QI Y+++DAW+ I +R K+ G+ C S
Sbjct: 328 THLLPYPAEGVEVVYTTDPIEVEAWLRNNVIDCSAQ---AVGFDIEWKPQLKRKKDGGIENKTAVLQLATESSCLVFQLYNL-GRPPNDLVSVLKDERILKVGSGILQDVTKLKKDTGLKCIGLVDTQNLAKEVGMLESQKLGLKALAKYLLGIELEKPKLVTRSNWENFPLTVKQIHYAALDAWIGLKI----YRSMKAMQGKSTCKS 528
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1009529707|ref|XP_015926356.1| (exonuclease 3'-5' domain-containing protein 2-like [Parasteatoda tepidariorum]) HSP 1 Score: 99.7525 bits (247), Expect = 2.719e-19 Identity = 61/162 (37.65%), Postives = 92/162 (56.79%), Query Frame = 0
Query: 138 VAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEED-IFLVRLQHMRG-KVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQ--QCSDWGNLELSAEQIKYSSIDAWVAPAIVGHLFRR 295
V + ++G+D EW + R RN V+LLQLA L+RL + +P + +L +E I+KVG I DA +L +DY L+ RG +DLR + L ++ K + L+ E L +D++KS+ +CSDW EL+ EQIKY+S D VA I + +R
Sbjct: 54 VLKHSKVIGLDCEWVNDEGR--RNSVSLLQLANNSGYCILIRLCCLPVWLIPEGISNILLNENILKVGVGIYDDANKLFEDYGLEVRGFIDLRFLANDLEELREKNLGLKSLSHELLNIDLNKSKRLRCSDWDAPELTDEQIKYASEDVIVAAQIFFEIKKR 213
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|224139642|ref|XP_002323207.1| (hypothetical protein POPTR_0016s02850g [Populus trichocarpa] >gi|222867837|gb|EEF04968.1| hypothetical protein POPTR_0016s02850g [Populus trichocarpa]) HSP 1 Score: 93.5893 bits (231), Expect = 9.806e-19 Identity = 64/204 (31.37%), Postives = 100/204 (49.02%), Query Frame = 0
Query: 95 INRHDVTVEVHSGRGPSLQRLRVHVLPLE-SDKLEVLLSQVYDRVAQRGG------IVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREV-TQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAI 288
I H + E H+ R+H L S + +++ ++ Q IVG+D EW+P R NPVA LQL+ D + +L H +P SLH L+D VG I GD K+L +DY L VDLR + + LG + K + LA+E L +++K ++ S W N L+ Q++Y+ +DA+++ I
Sbjct: 5 IENHHLPYETHNLYDVKFFDDRIHTLVTHTSSFVNTWIAETQQKLLQNNNHAHRPLIVGLDVEWRPNRFRRIENPVATLQLSAGNDCLIFQLLHCPTGIPQSLHDFLSDMTYTFVGVGIEGDVKKLTEDYELSVGNAVDLRGLAAEKLGDSRWKNSGVKRLAREVLGKEIEKPKRITLSRWDNPWLTPAQVQYACLDAFLSCKI 208
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1035914976|gb|OAY44569.1| (hypothetical protein MANES_08G161800 [Manihot esculenta]) HSP 1 Score: 93.5893 bits (231), Expect = 1.074e-18 Identity = 58/195 (29.74%), Postives = 102/195 (52.31%), Query Frame = 0
Query: 98 HDVTVEVHSGRGPSLQRLRVHVLPLESDKL-EVLLSQVYDRVAQRGGIVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREV-TQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQC--SDWGNLELSAEQIKYSSIDAWVAPAI 288
+ +T + H+ + ++H L + L + +++ + Q IVG+D EW+P R NP+A LQL + + +L + +P SL L E + VG IG D ++L++DY L R VDLR + + LG+ + K + L KE L +++K ++ S W N L+ +Q++Y+ +DA+V+ I
Sbjct: 8 YQLTNDTHNLYDITFFTDQIHTLVTNTPSLVDQWITETQQLLHQNPTIVGLDVEWRPNFNRHIENPIATLQLCIDHKCLIFQLIY-SPTIPQSLVEFLLSENFLFVGVGIGSDVEKLVEDYGLSVRNTVDLRNLAAEKLGMRELKNAGLKNLVKEVLGKEINKPKRVTMSRWDNPWLTPDQVQYACLDAFVSSEI 201
BLAST of EWM28163.1 vs. NCBI_GenBank
Match: gi|1213774863|emb|SBW09222.1| (3'-5' exonuclease family protein [uncultured delta proteobacterium]) HSP 1 Score: 93.2041 bits (230), Expect = 1.249e-18 Identity = 52/142 (36.62%), Postives = 80/142 (56.34%), Query Frame = 0
Query: 144 IVGMDAEWQPEVLRFERNPVALLQLAWEEDIFLVRLQHMRGKVPASLHRLLADERIIKVGCNIGGDAKRLLKDYALDTRGHVDLREVTQGLGLVQCKRRSMAWLAKEFLRMDMDKSQQCSDWGNLELSAEQIKYSSIDAWVA 285
++G D E +P + +P L+Q+A + ++L++L + P + LAD+ IK G IG D + L K Y G VDLR++ + + R + LA FL M + K+ QCS+WGN ELSA+QI Y++ DAWV+
Sbjct: 50 LLGFDTESKPIFRKGVISPPTLMQIACSDIVYLIQLTWLPFNEP--MASFLADQERIKTGVAIGDDIRMLNKVYPFTAAGLVDLRDIAR---IKNLATRGLRTLAANFLHMRISKNAQCSNWGNKELSAQQITYAATDAWVS 186 The following BLAST results are available for this feature:
BLAST of EWM28163.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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