rna2450, rna2450 (mRNA) Nannochloropsis gaditana

Overview
Namerna2450
Unique Namerna2450
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1320
Alignment locationCM002459.1:410605..412481 -

Link to JBrowse

Properties
Property NameValue
Productlight harvesting complex protein
Orig transcript idgnl|cribi|Naga_100004g86.9114.mrna
Orig protein idgnl|cribi|Naga_100004g86.9114
GeneLhcv3
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:410605..412481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Lhcv3gene2343Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2450rna2450-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28183.1cds2442Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2450 ID=rna2450|Name=rna2450|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp
ATGCGCTATTTGCGACAATTTCTTGCGTTATCCGCATTCCTTTTTCTAAA
AGAAGCAGACGTTTGTTCCAAGGCCAAGATGAAGACAAGATTAGCGGCGC
GGCGGTCGTCACCTCTAAGACACATACGCCTGATATTTCCTATCCTACTT
ATTTTCGACCTGCAGATTGCGGATACTGTTAGCGGGTTTGTTCTTTTAAA
GCCCCCCCCCCAATCACATTCTAGCTACCTGCGGCCCTCAACCTCTTCAA
AGGTTCCACCGCGTCAACCGTGTGTTGCGCAAGCCATACGCTCCATCAAT
CTTCGTGGTATCGCAATATTCTCATTAGGTCTTAATTCTTACATTGTCCC
GGGCCCTGACAACTCTCAAGACCTGCGGGAATTCGATATTCCCCAGACGG
TGACGGAGCCTCTCCCCCTTCCACAAGCTGTCTACGTCTTTGGTGGCTAC
ACCAGCAAGTCCAAGGCACGTAAACTCATCCGCAAGGGACAGGTTCTTGT
CAATGACGAGCCTGGAAAAACTTGTGAGGCTATCGTGGAAAAAGGTGATA
GAATTAAAGTCGTAGCTCAGGAGACAAATGGTAAGCAGAAGGGCGGGGCC
GGGCGAGGGGTAAAAAAGGTGGTTGTTGTTTGGGAGGACGACGATCTGGC
TGTGATAGTCAAACCAGCTGGCGTCGCTGTTCATGGAACGGGAGCATACT
CGTTGGTGGACGAATACAGCAAGTTTTTGCAGCCAACAAGCCGCAGCCTT
GAAGACGGGGCTCTGCCCAAGCCCGTGCACGCCCACCGCCTGGACGCGCC
CGTGGGCGGCCTGCTCCTCGTCGCCAAGACCAAGCCCGCCTTGCAGGGGC
TCGTGACCGCCTTTCTGGAGCGGCGCGTCCAGAAGACGTACCGCGCTGTT
GTGATAGGGCGGCCGGCAGAACCCGCCGGCCAGGTCCTTGCGCCCGTGGA
GGGGAAGGACGCGGTCACCCGGTATAAGGTGGTGGCGTCGGTCCCCTCGC
CCGCTTTTGGCGCGCTCACGTCCATAGAATTGAATCCTGAGACAGGGCGA
AAGCATCAATTGCGGCAGCACTGCCAGGCCTTAGGCACCCCAATCCTAGG
CGATCTGAGGTACGGGCCGTCCAATACCTTGCGGACGCGTGGCTTGTTCC
TCTATTCCATGGCCGTGAGCTTCGTGCACCCGGTGACGACGACAGCGGAG
ACCTTCAGGATAGAGGTGCCTGAGATTTTCGGGAACACCATGAATATGGA
GAGGAAGAAGGCGGAGCGGATGGCTGAGGAGGAGGAGGGTGGAAGCACGG
AGGAAGGGGAGGGTGCCTAA
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protein sequence of rna2450

>rna2450-protein ID=rna2450-protein|Name=rna2450|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MMRAVVLLGLLSSAAAFIPATFNTGKSSYARKNLVVASVSDLIGADTETG
GIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFS
NPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKEDRAPGDLNFGSS
FIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLAGHL
NPFGDGQGFF
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mRNA from alignment at CM002459.1:410605..412481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2450 ID=rna2450|Name=rna2450|organism=Nannochloropsis gaditana|type=mRNA|length=1877bp|location=Sequence derived from alignment at CM002459.1:410605..412481- (Nannochloropsis gaditana)
CGCGGTGCCCGCCAGGGATGATACCGATTTCAACTTGCCAGCGCCCGTGT
CGAAATGCGTCCAAGGGGGCTCTACATCTCGATGATCGTCAAGATAGTAA
GGGACTGCATGGCTTTCAGCGTAATGAGGGCAAGGCGTTCGTGGTGCCAT
TTTTTCGACGGACGAAATGTTGGCTTTCTCCGCTTGAGGCTGGTGCCTGA
AGTGATCCTAGTTCAGTGTCTCCCAAGCCGAACGGGTGTTGATCGGCAAC
TTGCCTTCCTTCTTTGTAATTGGGCAGTCATAGACAAACAAACACACACA
TGGTTGTAGAAGCAGGAGAGCACGGGAACGCTTTTACAGGCGCACGTTGA
CTCTTGCAGCAGAGTGTCCGGCAGAACGTCTTGATGGGTATGCGCCTGTT
GCGGCTCCCTGCTCTTACTCCTTGTGTGCAAGTGTTATCATGTCCAAAAG
ACAGACTGAGCATTCTCCCTGGAAGATCTAGCGTACAATGTTGAGTTCAA
GCTGCGAATTCTAACCCTTTTCCAAAATCTTGAAATTTTATGCATATACC
CTGCAGAATCCTCCGTCTCTCGAAATGATGCGCGCCGTTGTTTTGCTGGG
GCTGCTGTCCTCTGCCGCCGCTTTCATTCCTGCGACTTTCAACACAGGCA
AGAGCTCATACGCCCGCAAAAACTTGGTGGTGGCCTCGGTTTCTGACTTG
ATCGGAGCGGACACGGAGACGGGCGGGATCTGGGATCCTCTGGGCCTGAG
CCAGAACGAGGGTTCCCTCCGTAAGTACCGCGAGTGCGAGCTCAAGCACG
GGCGTGTAGCCATGGCTGCCATGCTCGGTATCTTTGTCCAAGGTCTCTAC
CACCTTCCGGATCCCGTCTTTAGCAACCCTCGCCCTCTGGCTGCCTTGCA
GCAGGTCTACGAGCAACGTCCCGAGGCCATTTGGCAGATCATCGTAGGAC
TGGGCGTGATCGAGTTCACGGGGGGCCGACAAAAGGAGGACCGTGCCCCT
GGCGACTTGAACTTTGGTTCTTCTTTCATCCCCAAGAGCGAGAAGGAGTT
CGAGGAATTGCAGCTGAAGGAGCTGAAAAACGGGCGCCTGGCGATGGTGG
CCTCCATGGGCGCCCTGCTCCAGGAATACCTGACAGGCCAGGGGCCGGTG
GAGCAAGTCTTGTAAGGAGGAGGCGGCGAGAGAGAAGGGGGGCCGAGAGT
GACGTCAGGGATGACGGTTACGGGGGAAATGCCTGCAGGCAGTAGATCAC
AGGGCGATTTCTTCCTCAGGCGCTAACGCACTGCACCCCAACACAGGGCT
GGCCACTTGAATCCCTTCGGTGACGGCCAAGGGTTCTTCTGTAAGTACCA
ACGGCTTGGGAGGGTTGATTGATAATGGAGGCACAGGGCCTGGTCGGTGG
ACAGGAGAGATGCCTAGATTCCGCAGGATCCTTGTGCGCTTGCGATTTAT
CTGTGTATCTCACACACCGCTTTCCTGACTACAGAAACCCAGCCGACTTC
TTGGCACCGCAAACGGGAGGGCCCATGGCGAGAACAAGCTTGATTTTTCA
TTTCATCGGGCACACGGAGAACACTTCCGGCGTAGAATAGGCTGGGGAGT
CAGTGGATGTAAGGATTATCACCATCATGAGCGTCCTGATTCATTGTGGG
GAGGATAACTGATCGGATAAGAGATCGAAAAGGAAATCAATCAAGATACC
CGGAAATGACAGGCATGTGAATTTTCGTGAGAGCTACCTCCGCTCCTCAT
CACTCGTGTAGTGTTATGCACTGCGTACAGCTCGCAGTGTCTTCCGCCAA
GTCGCACAAGATCAAATTTGTGTTAATAATGCTATTTACAATCAGTAGCT
GGTACTTCTATATTAGGCACCCTCCCC
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Coding sequence (CDS) from alignment at CM002459.1:410605..412481-

>rna2450 ID=rna2450|Name=rna2450|organism=Nannochloropsis gaditana|type=CDS|length=1899bp|location=Sequence derived from alignment at CM002459.1:410605..412481- (Nannochloropsis gaditana)
AAGGCTGGCCACTTGAATCCCTTCGGTGACGGCCAAGGGTTCTTCTATGA
TGCGCGCCGTTGTTTTGCTGGGGCTGCTGTCCTCTGCCGCCGCTTTCATT
CCTGCGACTTTCAACACAGGCAAGAGCTCATACGCCCGCAAAAACTTGGT
GGTGGCCTCGGTTTCTGACTTGATCGGAGCGGACACGGAGACGGGCGGGA
TCTGGGATCCTCTGGGCCTGAGCCAGAACGAGGGTTCCCTCCGTAAGTAC
CGCGAGTGCGAGCTCAAGCACGGGCGTGTAGCCATGGCTGCCATGCTCGG
TATCTTTGTCCAAGGTCTCTACCACCTTCCGGATCCCGTCTTTAGCAACC
CTCGCCCTCTGGCTGCCTTGCAGCAGGTCTACGAGCAACGTCCCGAGGCC
ATTTGGCAGATCATCGTAGGACTGGGCGTGATCGAGTTCACGGGGGGCCG
ACAAAAGGAGGACCGTGCCCCTGGCGACTTGAACTTTGGTTCTTCTTTCA
TCCCCAAGAGCGAGAAGGAGTTCGAGGAATTGCAGCTGAAGGAGCTGAAA
AACGGGCGCCTGGCGATGGTGGCCTCCATGGGCGCCCTGCTCCAGGAATA
CCTGACAGGCCAGGGGCCGGTGGAGCAAGTCTTAAGGCTGGCCACTTGAA
TCCCTTCGGTGACGGCCAAGGGTTCTTCTATGATGCGCGCCGTTGTTTTG
CTGGGGCTGCTGTCCTCTGCCGCCGCTTTCATTCCTGCGACTTTCAACAC
AGGCAAGAGCTCATACGCCCGCAAAAACTTGGTGGTGGCCTCGGTTTCTG
ACTTGATCGGAGCGGACACGGAGACGGGCGGGATCTGGGATCCTCTGGGC
CTGAGCCAGAACGAGGGTTCCCTCCGTAAGTACCGCGAGTGCGAGCTCAA
GCACGGGCGTGTAGCCATGGCTGCCATGCTCGGTATCTTTGTCCAAGGTC
TCTACCACCTTCCGGATCCCGTCTTTAGCAACCCTCGCCCTCTGGCTGCC
TTGCAGCAGGTCTACGAGCAACGTCCCGAGGCCATTTGGCAGATCATCGT
AGGACTGGGCGTGATCGAGTTCACGGGGGGCCGACAAAAGGAGGACCGTG
CCCCTGGCGACTTGAACTTTGGTTCTTCTTTCATCCCCAAGAGCGAGAAG
GAGTTCGAGGAATTGCAGCTGAAGGAGCTGAAAAACGGGCGCCTGGCGAT
GGTGGCCTCCATGGGCGCCCTGCTCCAGGAATACCTGACAGGCCAGGGGC
CGGTGGAGCAAGTCTTAAGGCTGGCCACTTGAATCCCTTCGGTGACGGCC
AAGGGTTCTTCTATGATGCGCGCCGTTGTTTTGCTGGGGCTGCTGTCCTC
TGCCGCCGCTTTCATTCCTGCGACTTTCAACACAGGCAAGAGCTCATACG
CCCGCAAAAACTTGGTGGTGGCCTCGGTTTCTGACTTGATCGGAGCGGAC
ACGGAGACGGGCGGGATCTGGGATCCTCTGGGCCTGAGCCAGAACGAGGG
TTCCCTCCGTAAGTACCGCGAGTGCGAGCTCAAGCACGGGCGTGTAGCCA
TGGCTGCCATGCTCGGTATCTTTGTCCAAGGTCTCTACCACCTTCCGGAT
CCCGTCTTTAGCAACCCTCGCCCTCTGGCTGCCTTGCAGCAGGTCTACGA
GCAACGTCCCGAGGCCATTTGGCAGATCATCGTAGGACTGGGCGTGATCG
AGTTCACGGGGGGCCGACAAAAGGAGGACCGTGCCCCTGGCGACTTGAAC
TTTGGTTCTTCTTTCATCCCCAAGAGCGAGAAGGAGTTCGAGGAATTGCA
GCTGAAGGAGCTGAAAAACGGGCGCCTGGCGATGGTGGCCTCCATGGGCG
CCCTGCTCCAGGAATACCTGACAGGCCAGGGGCCGGTGGAGCAAGTCTT
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Synonyms
Publications