rna2445, rna2445 (mRNA) Nannochloropsis gaditana

Overview
Namerna2445
Unique Namerna2445
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1059
Alignment locationCM002459.1:400430..401552 +

Link to JBrowse

Properties
Property NameValue
ProductUbiquitin-conjugating enzyme/RWD
Orig transcript idgnl|cribi|Naga_100004g80.9161.mrna
Orig protein idgnl|cribi|Naga_100004g80.9161
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:400430..401552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g80gene2338Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2445rna2445-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28230.1cds2437Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2445 ID=rna2445|Name=rna2445|organism=Nannochloropsis gaditana|type=mRNA|length=1059bp
CCCTCGTTCTCACTGCTGGTACTGAGCACGATCACAGAGATCAGCGAGAA
GAGAGCCATGACAAAATGGGAAGCACGCACACTGGCCTCACAGAGTGCAC
ACACACCTGATACAGCCCCTTCGAATGCCGCGGTTGCTTCAGGTTGTGTT
GATGCTGATGTTCTGCTCTCGCATTGCCGGCTTCTGTAAACCTCGCATGG
GAACGCTTCCCGTTCGTCTTCCCTCACGTGCTGCTGCTCACCGAGGGCTT
AAAATGATGTCAACGCAATTAGACAAGCGGCCGAATTTGTACATCTACGA
CCACTGCCCTTTTTGTGTTCGCGCGCGCATCATCTTCGGTCTGAAACGAA
TTCCTCACCAGCTCATCTTCCTCGACAACGACGACGCGGACACGCCCACT
GCCTTGGTCGGCAAGAAAATGGTGCCCATCTTGGAGATGATCGACGCCCA
GGGCGAGCGCGTGGTCATGCCTGAGTCCATGGACATCGTGAAGCTGATAG
ACGAGGACCCTCGGTGGGGGCCACCCGTGCTCCGGCGTGGCAGTGACCGG
GAAGACATCAAAGCCTTTTTCGATTCAATAGCGGACCTCAGCCGACGCTG
TACGCGGCCTCGCTTCGCCCTGTCCAGTGTCCTTCCCGAATTTCACACAC
CTGCGGCCCGGGCAGCTTTTGTCCGAAACCACCCCTTCAAGTCGCCCCCC
TTCGACTACACGGAGAACCTGCAGAACAAGAGCCTGGTGGCTGACTTGAG
CGCCCGCCTAAGAGAGCTGGACGCCATGCTCTTCTCGGACGAGTGCGTGA
CCGAGGGCGGGGTCTCATACGACGACGTGGACCTCTTCGGGAAGGTCCGC
GGGCTCACGGTTGTGGCGGGTCTGGTCCTGCCGCCGAGGCTCAAAGCTTA
CGTGGAGGCCTTTGGGGAGAAGACGGAGATTCCCTTGTACTACCAGATGG
GGCTCTAGGGGAGGGGAAGCGATGGGCCTCCGCCGGGATTGATTGAAAAT
CTGAAATGCAAAACAAGGAATGAGCCTTTAGAAAGAATAGCCAGTTGTGT
AAGACTATT
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protein sequence of rna2445

>rna2445-protein ID=rna2445-protein|Name=rna2445|organism=Nannochloropsis gaditana|type=polypeptide|length=312bp
MDPTQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGEN
YVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEG
MAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTR
AGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAK
GGVGVAGKTGKAAGNGGAVKPSGKEMFLRHLAGTAEEDEEGAEEDEGGRL
EVESELFEEEEDDSDFELESEDDEDESDYGDDSEESEESDAAATRKKGRE
KKGGDGLRGKKR
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mRNA from alignment at CM002459.1:400430..401552+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2445 ID=rna2445|Name=rna2445|organism=Nannochloropsis gaditana|type=mRNA|length=1123bp|location=Sequence derived from alignment at CM002459.1:400430..401552+ (Nannochloropsis gaditana)
cccacccttcgcTTTCTGGCCACTTTGCGccccgtccctgtcctttTTTG
CGGCAAGCTAAAGCCTCAAGGTAGCCTAATGCCACCTCTCATGCCACAGG
GAAGCCAGGTAGGGCAGGCGTGGGCTGTCGGAGGGCGTGAGAGTGATGGA
TCCCACGCAgtgtgaggaggagcaggccttggaggcggagtCGCTGGAGT
GCATCCTAATGGACGACCTTGAGGTCCTCTCTGCATCTGTTCCCAGGCAG
TATCGAGTCCGAGTGGTCCCGTACGTgaatggggaaggggaaaactACGT
GGCTGTGAAAGCCACCTTCAGCATCCCCCCAGGCTACCCGGACACCAAGG
CGGACGTGAGCGTGGCTGCAGTGAAGggcctctccacctcccagtGTCAA
GAATTGGAGCGTCTCATGGACCAGAAAGCTACCGAAAATGAGGGGATGGC
CATGGTCTACTTGCTGGTGGACATGATTCGAGAATGGCTGATAGAGCGCA
ACGTGGCGGGGGCCACAGACGGCTCCATGCATGCGGAGATGCTCAAGAGA
ATGCAcatgaaggaaaaggacgagaAACGCGCCGCAGACACCAGGGCAGG
AGAGGTTGCAAGTAGCGCATCGTTGAGCGAAGAGGATGCGCTCATGCGGC
AGAAGCGGCTGGAAGGAACGCCTGTAACCCCCGAATCCTTTCTGAAGTGG
CGGACGGCGTTCGAGGCGGAAATGGCCGCCTgtgcggaggcgaagggggg
ggtgggagtggCAGGAAAGACCGGCAAAGCAGCTGGGAATGGCGGCGCAG
TGAAACcgtcggggaaggagatgttCCTGCGGCACCTGGCCGGGACggct
gaggaggacgaggagggggccgaggaggacgagggggggaggctggaggt
ggagtcGGAGTTgttcgaggaggaggaggacgacagcgATTTTGAGCTCG
AATcggaagacgatgaagatgagAGCGACTATGGGGATGATAgtgaggag
agtgaggaaaGCGACGCGGCTGCaacaagaaagaaaggaagggaaaagaa
gggaggtgaCGGGTTgcgggggaagaagaggtagacAGCCATCACAAAGG
AAGTGAAATAAAGCATCGCTGCA
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Coding sequence (CDS) from alignment at CM002459.1:400430..401552+

>rna2445 ID=rna2445|Name=rna2445|organism=Nannochloropsis gaditana|type=CDS|length=939bp|location=Sequence derived from alignment at CM002459.1:400430..401552+ (Nannochloropsis gaditana)
ATGGATCCCACGCAgtgtgaggaggagcaggccttggaggcggagtCGCT
GGAGTGCATCCTAATGGACGACCTTGAGGTCCTCTCTGCATCTGTTCCCA
GGCAGTATCGAGTCCGAGTGGTCCCGTACGTgaatggggaaggggaaaac
tACGTGGCTGTGAAAGCCACCTTCAGCATCCCCCCAGGCTACCCGGACAC
CAAGGCGGACGTGAGCGTGGCTGCAGTGAAGggcctctccacctcccagt
GTCAAGAATTGGAGCGTCTCATGGACCAGAAAGCTACCGAAAATGAGGGG
ATGGCCATGGTCTACTTGCTGGTGGACATGATTCGAGAATGGCTGATAGA
GCGCAACGTGGCGGGGGCCACAGACGGCTCCATGCATGCGGAGATGCTCA
AGAGAATGCAcatgaaggaaaaggacgagaAACGCGCCGCAGACACCAGG
GCAGGAGAGGTTGCAAGTAGCGCATCGTTGAGCGAAGAGGATGCGCTCAT
GCGGCAGAAGCGGCTGGAAGGAACGCCTGTAACCCCCGAATCCTTTCTGA
AGTGGCGGACGGCGTTCGAGGCGGAAATGGCCGCCTgtgcggaggcgaag
gggggggtgggagtggCAGGAAAGACCGGCAAAGCAGCTGGGAATGGCGG
CGCAGTGAAACcgtcggggaaggagatgttCCTGCGGCACCTGGCCGGGA
Cggctgaggaggacgaggagggggccgaggaggacgagggggggaggctg
gaggtggagtcGGAGTTgttcgaggaggaggaggacgacagcgATTTTGA
GCTCGAATcggaagacgatgaagatgagAGCGACTATGGGGATGATAgtg
aggagagtgaggaaaGCGACGCGGCTGCaacaagaaagaaaggaagggaa
aagaagggaggtgaCGGGTTgcgggggaagaagaggtag
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Synonyms
Publications