EWM28230.1, cds2437 (CDS) Nannochloropsis gaditana

Overview
NameEWM28230.1
Unique Namecds2437
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:400575..401513 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28230.1
ProductUbiquitin-conjugating enzyme/RWD
Orig transcript idgnl|cribi|Naga_100004g80.9161.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:400575..401513 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR006575RWD-domain
Homology
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|585110575|gb|EWM28230.1| (Ubiquitin-conjugating enzyme/RWD [Nannochloropsis gaditana])

HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
Query:    1 MDPTQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHLAGTAEEDEEGAEEDEGGRLEVESELFEEEEDDSDFELESEDDEDESDYGDDSEESEESDAAATRKKGREKKGGDGLRGKKR 312
            MDPTQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHLAGTAEEDEEGAEEDEGGRLEVESELFEEEEDDSDFELESEDDEDESDYGDDSEESEESDAAATRKKGREKKGGDGLRGKKR
Sbjct:    1 MDPTQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHLAGTAEEDEEGAEEDEGGRLEVESELFEEEEDDSDFELESEDDEDESDYGDDSEESEESDAAATRKKGREKKGGDGLRGKKR 312          
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|298709465|emb|CBJ31370.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 168.318 bits (425), Expect = 5.334e-47
Identity = 98/230 (42.61%), Postives = 136/230 (59.13%), Query Frame = 0
Query:    4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGE-NYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKR-LEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHL 231
            T  EEEQ++E E+LE I  D   ++S   P +++V + P   GEGE N+V +  T  IP  YPD    V V A KGL+  Q +EL+ +   +A EN GMAM Y + + ++EWL + NV  A DGSMH EML+RM   ++D ++    +  E  + A   E+D  +R++R ++GTPVT ESF  W+TAFE EM      +GG  +A +         A KPSGKEMFLRHL
Sbjct:    6 TNHEEEQSMELEALEAIYADLFSIVSEK-PLEWKVHLEPTEGGEGEVNHVGIDFTCRIPERYPDEAPGVEVEATKGLTPKQIEELQAVAQTQAEENVGMAMGYTIAESLKEWLADNNVPSAVDGSMHGEMLRRMAEGDRDRRKVEQVKEAEAKARAEDEEDDETIRRRRQIDGTPVTIESFKAWQTAFELEM------RGGKAIAEEQ-------VAKKPSGKEMFLRHL 221          
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|1173932960|gb|OQR84842.1| (hypothetical protein ACHHYP_12630 [Achlya hypogyna])

HSP 1 Score: 137.887 bits (346), Expect = 1.184e-35
Identity = 90/214 (42.06%), Postives = 123/214 (57.48%), Query Frame = 0
Query:    8 EEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAVK 220
            EEQ +E E+LE I MDD   +  S P   +V +VP  +GE  N+VA+  T ++P  YP+    + +   KGLS  Q +E+  L+D +  EN GMAM+Y + + IRE+L+E N  G  DGS + EML+RM  K+K E    DT A   A+ A L EE+A +  K  EGTPVT ESF  W+  F+AEM +    K GV    + TG+     GA K
Sbjct:    6 EEQMMEVEALESIYMDDFTKIQDS-PVVVKVHIVPNQDGEN-NHVALSLTCTLPETYPEAAPAIDIILEKGLSDRQEKEIRALLDSQVEENMGMAMIYTISEAIREYLVENNREG-NDGSEYQEMLRRMESKQKKE----DTAAA--AAQAKLDEENASVTTKSNEGTPVTVESFNAWKAKFDAEMMSKVAGKTGVSTEKRLTGRQLWTSGAAK 210          
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|325181964|emb|CCA16418.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 134.806 bits (338), Expect = 5.298e-34
Identity = 88/243 (36.21%), Postives = 128/243 (52.67%), Query Frame = 0
Query:    4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHLAGTAEEDEEGAEEDE 246
            T   E+  +E E+LE I M D  ++    P  Y V +VP  +G  EN+VA+  T  IP  YP+ + ++ +  +KGLS +Q  E+E L+ Q+   N GM M+Y + + +RE+L+E N AG  DGS + EML+RM +K+K E R      G     A   EE A ++ K   G PVTP++F  WR  F+ EM   ++          TG+     G VK  G+E       G + +D E AE DE
Sbjct:   40 TDHREDMMMEVEALESIYMQDFTMIKDK-PLCYAVHIVPNQDG-SENHVALTLTCCIPETYPEQEPNLEITTLKGLSDAQRNEIEALLQQQIRGNAGMPMIYTISEAVREYLVENNRAGH-DGSEYQEMLRRMEIKKKSEDR------GTAVELAKREEEAAHVQAKDTTGNPVTPKTFQAWRDQFDVEMRLNSKVAVRETNTKLTGRQLWTQGLVKDEGEEGIEDDFHGDS-DDAEDAESDE 272          
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|953498970|emb|CEG39690.1| (rwd domain-containing protein 1 [Plasmopara halstedii])

HSP 1 Score: 132.88 bits (333), Expect = 6.047e-34
Identity = 83/217 (38.25%), Postives = 119/217 (54.84%), Query Frame = 0
Query:    4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAV 219
            T   EEQA+E E+LE I MDD   LS   P  Y+V VVP  +G+  N+VA++    IP  YPD + ++ V  +KGL   Q +E+++L+ Q+  EN G AM+Y L + +RE+L+E N  G  DGS H EML+RM +K    K A +    E    A++  E     Q+   GTPVT E+F  W+  F+ E+ +  E         K TG+   + G V
Sbjct:    2 TDYHEEQAMEMEALEAIYMDDFTKLSDK-PLTYQVHVVPNQDGDS-NFVALQLKAKIPEKYPDLEPEIEVIVLKGLVDRQVKEIKQLLAQQIEENMGTAMMYTLTEAVREYLVENNREG-NDGSEHQEMLRRMELK----KVAEEKVEAEKLEQANVKGEG---NQREFHGTPVTVETFAAWKAKFDTEVTSIKETSLKKEATAKLTGRQLWSKGLV 208          
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|675163443|ref|XP_008890606.1| (hypothetical protein PPTG_00817 [Phytophthora parasitica INRA-310] >gi|566033627|gb|ETI56538.1| hypothetical protein F443_00960 [Phytophthora parasitica P1569] >gi|567971312|gb|ETK96323.1| hypothetical protein L915_00901 [Phytophthora parasitica] >gi|568028833|gb|ETM02769.1| hypothetical protein L917_00856 [Phytophthora parasitica] >gi|568059439|gb|ETM56015.1| hypothetical protein L914_00895 [Phytophthora parasitica] >gi|568109942|gb|ETN24549.1| hypothetical protein PPTG_00817 [Phytophthora parasitica INRA-310] >gi|570337264|gb|ETO85212.1| hypothetical protein F444_00969 [Phytophthora parasitica P1976] >gi|570961357|gb|ETP26336.1| hypothetical protein F441_00936 [Phytophthora parasitica CJ01A1] >gi|570997950|gb|ETP54231.1| hypothetical protein F442_00914 [Phytophthora parasitica P10297] >gi|970663137|gb|KUG00387.1| RWD domain-containing protein 1 [Phytophthora nicotianae])

HSP 1 Score: 132.494 bits (332), Expect = 1.577e-33
Identity = 87/217 (40.09%), Postives = 123/217 (56.68%), Query Frame = 0
Query:    4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAV 219
            T  +EEQA+E E+LE I MDD   LS   P  Y+V VVP  +GE  N+VA+     IP  YPD +  + V   KGL+  Q +E++ L+ Q+  EN GMAM+Y L + +RE+L+E N  G  DGS H EML+RM +K+K E++    +  +  + A  S       ++   GTPVT E+F  W+  F+AEMA   +A      + K TG+   N G V
Sbjct:    2 TDYKEEQAMEVEALEAIYMDDFTKLSDE-PLTYQVHVVPNQDGEN-NFVALILKAEIPETYPDLEPKIEVIVKKGLADRQVKEIKELLAQQIEENMGMAMMYTLSEAVREYLVENNREG-NDGSEHQEMLRRMELKKKKEEKVEADKLEQANAEAEES-------RREFHGTPVTVETFAAWKAKFDAEMAPKKKASIKDEASAKLTGRQLWNKGLV 208          
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|698792424|ref|XP_009829244.1| (hypothetical protein H257_05922 [Aphanomyces astaci] >gi|698792426|ref|XP_009829245.1| hypothetical protein, variant [Aphanomyces astaci] >gi|574115901|gb|ETV81386.1| hypothetical protein H257_05922 [Aphanomyces astaci] >gi|574115902|gb|ETV81387.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 132.494 bits (332), Expect = 2.202e-33
Identity = 86/218 (39.45%), Postives = 117/218 (53.67%), Query Frame = 0
Query:    4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAVK 220
            T   EEQ +E E+LE I MDD   +  S P   +V+++P  NG G N+VA+   F++P  YPD    V +   KGLS  Q +++  L++Q+  EN GMAMVY + + +RE+LIE N  G  DGS + EML+R   + K      DT A E A +    E +     K   GTPVT  SF  W+ AF+ EMA     K  VG   + TG+     GA K
Sbjct:    2 TDYAEEQTMEVEALESIYMDDFAKVQDS-PLSMKVKLIPDQNG-GVNHVALSLVFTMPAKYPDALPLVDIKLEKGLSEPQERDIRELLNQQMEENTGMAMVYTVCEAVREYLIENNREG-NDGSEYQEMLRRQEHRHK-----TDTIAAEAAQAILDKENEGKGPAKSTTGTPVTVASFNAWKAAFDLEMATKTGVKIAVGAEKRLTGRQLWTTGAAK 211          
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|673043447|ref|XP_008875684.1| (hypothetical protein H310_10961 [Aphanomyces invadans] >gi|574468473|gb|ETV95491.1| hypothetical protein H310_10961 [Aphanomyces invadans])

HSP 1 Score: 131.724 bits (330), Expect = 3.728e-33
Identity = 86/218 (39.45%), Postives = 121/218 (55.50%), Query Frame = 0
Query:    4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAVK 220
            T   EEQ +E E+LE I MDD   +  S P   +VR++P   G G N+VA+   F++P  YPD    V +   KGLS  Q +++  L++Q+  +N G+AMVY + + +RE+LIE N  G  DGS + EML+R   ++K      DT A E A +    E ++    K   GTPVT ESF  W+ AF+ EMA  + AK  VG   + TG+     GA K
Sbjct:    2 TDYVEEQMMEVEALESIYMDDFTKVQES-PLSLKVRLIPDQTG-GVNHVAMSLVFTMPAKYPDELPSVDIKLEKGLSEPQERDIRALVNQQMEDNTGIAMVYTVCEAVREYLIENNREG-NDGSEYQEMLRRQEQRQKK-----DTIAAEAAQAVLEKEAESKGVSKPSSGTPVTVESFNAWKAAFDLEMATKSGAKIAVGAEKRLTGRQLWTTGAAK 211          
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|1214685711|gb|OWZ02662.1| (hypothetical protein PHMEG_00025735 [Phytophthora megakarya])

HSP 1 Score: 130.183 bits (326), Expect = 1.029e-32
Identity = 76/185 (41.08%), Postives = 112/185 (60.54%), Query Frame = 0
Query:   12 LEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAAC 196
            +E E+LE I MDD   LS   P  Y+V VVP  +GEG N+VA+    SIP  YPD + ++ V   KGL+ SQ +E+++L+ Q+  EN GMAM+Y L + +RE+L+E N  G  DGS H EML+RM    + +K+  +    +    A+  +E+   +++   GTPVT E+F  W+  F+AEMA  
Sbjct:    1 MEVEALEAIYMDDFTKLSDE-PLTYQVHVVPNQDGEG-NFVALLLKASIPETYPDIEPEIEVVVKKGLADSQVKEIKQLLTQQIQENMGMAMMYTLSEAVREYLVENNREG-NDGSEHQEMLRRM----ELKKKKEEKVEADKLEQANADDEE---KRREFHGTPVTVETFAAWKAKFDAEMAGT 175          
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|567971313|gb|ETK96324.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|570961358|gb|ETP26337.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 128.642 bits (322), Expect = 1.993e-32
Identity = 80/191 (41.88%), Postives = 113/191 (59.16%), Query Frame = 0
Query:    4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMA 194
            T  +EEQA+E E+LE I MDD   LS   P  Y+V VVP  +GE  N+VA+     IP  YPD +  + V   KGL+  Q +E++ L+ Q+  EN GMAM+Y L + +RE+L+E N  G  DGS H EML+RM +K+K E++    +  +  + A  S       ++   GTPVT E+F  W+  F+AEMA
Sbjct:    2 TDYKEEQAMEVEALEAIYMDDFTKLSDE-PLTYQVHVVPNQDGEN-NFVALILKAEIPETYPDLEPKIEVIVKKGLADRQVKEIKELLAQQIEENMGMAMMYTLSEAVREYLVENNREG-NDGSEHQEMLRRMELKKKKEEKVEADKLEQANAEAEES-------RREFHGTPVTVETFAAWKAKFDAEMA 182          
The following BLAST results are available for this feature:
BLAST of EWM28230.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110575|gb|EWM28230.1|0.000e+0100.00Ubiquitin-conjugating enzyme/RWD [Nannochloropsis ... [more]
gi|298709465|emb|CBJ31370.1|5.334e-4742.61conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173932960|gb|OQR84842.1|1.184e-3542.06hypothetical protein ACHHYP_12630 [Achlya hypogyna... [more]
gi|325181964|emb|CCA16418.1|5.298e-3436.21conserved hypothetical protein [Albugo laibachii N... [more]
gi|953498970|emb|CEG39690.1|6.047e-3438.25rwd domain-containing protein 1 [Plasmopara halste... [more]
gi|675163443|ref|XP_008890606.1|1.577e-3340.09hypothetical protein PPTG_00817 [Phytophthora para... [more]
gi|698792424|ref|XP_009829244.1|2.202e-3339.45hypothetical protein H257_05922 [Aphanomyces astac... [more]
gi|673043447|ref|XP_008875684.1|3.728e-3339.45hypothetical protein H310_10961 [Aphanomyces invad... [more]
gi|1214685711|gb|OWZ02662.1|1.029e-3241.08hypothetical protein PHMEG_00025735 [Phytophthora ... [more]
gi|567971313|gb|ETK96324.1|1.993e-3241.88hypothetical protein, variant [Phytophthora parasi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2445rna2445Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications