EWM28230.1, cds2437 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|585110575|gb|EWM28230.1| (Ubiquitin-conjugating enzyme/RWD [Nannochloropsis gaditana]) HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
Query: 1 MDPTQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHLAGTAEEDEEGAEEDEGGRLEVESELFEEEEDDSDFELESEDDEDESDYGDDSEESEESDAAATRKKGREKKGGDGLRGKKR 312
MDPTQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHLAGTAEEDEEGAEEDEGGRLEVESELFEEEEDDSDFELESEDDEDESDYGDDSEESEESDAAATRKKGREKKGGDGLRGKKR
Sbjct: 1 MDPTQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHLAGTAEEDEEGAEEDEGGRLEVESELFEEEEDDSDFELESEDDEDESDYGDDSEESEESDAAATRKKGREKKGGDGLRGKKR 312
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|298709465|emb|CBJ31370.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 168.318 bits (425), Expect = 5.334e-47 Identity = 98/230 (42.61%), Postives = 136/230 (59.13%), Query Frame = 0
Query: 4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGE-NYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKR-LEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHL 231
T EEEQ++E E+LE I D ++S P +++V + P GEGE N+V + T IP YPD V V A KGL+ Q +EL+ + +A EN GMAM Y + + ++EWL + NV A DGSMH EML+RM ++D ++ + E + A E+D +R++R ++GTPVT ESF W+TAFE EM +GG +A + A KPSGKEMFLRHL
Sbjct: 6 TNHEEEQSMELEALEAIYADLFSIVSEK-PLEWKVHLEPTEGGEGEVNHVGIDFTCRIPERYPDEAPGVEVEATKGLTPKQIEELQAVAQTQAEENVGMAMGYTIAESLKEWLADNNVPSAVDGSMHGEMLRRMAEGDRDRRKVEQVKEAEAKARAEDEEDDETIRRRRQIDGTPVTIESFKAWQTAFELEM------RGGKAIAEEQ-------VAKKPSGKEMFLRHL 221
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|1173932960|gb|OQR84842.1| (hypothetical protein ACHHYP_12630 [Achlya hypogyna]) HSP 1 Score: 137.887 bits (346), Expect = 1.184e-35 Identity = 90/214 (42.06%), Postives = 123/214 (57.48%), Query Frame = 0
Query: 8 EEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAVK 220
EEQ +E E+LE I MDD + S P +V +VP +GE N+VA+ T ++P YP+ + + KGLS Q +E+ L+D + EN GMAM+Y + + IRE+L+E N G DGS + EML+RM K+K E DT A A+ A L EE+A + K EGTPVT ESF W+ F+AEM + K GV + TG+ GA K
Sbjct: 6 EEQMMEVEALESIYMDDFTKIQDS-PVVVKVHIVPNQDGEN-NHVALSLTCTLPETYPEAAPAIDIILEKGLSDRQEKEIRALLDSQVEENMGMAMIYTISEAIREYLVENNREG-NDGSEYQEMLRRMESKQKKE----DTAAA--AAQAKLDEENASVTTKSNEGTPVTVESFNAWKAKFDAEMMSKVAGKTGVSTEKRLTGRQLWTSGAAK 210
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|325181964|emb|CCA16418.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 134.806 bits (338), Expect = 5.298e-34 Identity = 88/243 (36.21%), Postives = 128/243 (52.67%), Query Frame = 0
Query: 4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGKTGKAAGNGGAVKPSGKEMFLRHLAGTAEEDEEGAEEDE 246
T E+ +E E+LE I M D ++ P Y V +VP +G EN+VA+ T IP YP+ + ++ + +KGLS +Q E+E L+ Q+ N GM M+Y + + +RE+L+E N AG DGS + EML+RM +K+K E R G A EE A ++ K G PVTP++F WR F+ EM ++ TG+ G VK G+E G + +D E AE DE
Sbjct: 40 TDHREDMMMEVEALESIYMQDFTMIKDK-PLCYAVHIVPNQDG-SENHVALTLTCCIPETYPEQEPNLEITTLKGLSDAQRNEIEALLQQQIRGNAGMPMIYTISEAVREYLVENNRAGH-DGSEYQEMLRRMEIKKKSEDR------GTAVELAKREEEAAHVQAKDTTGNPVTPKTFQAWRDQFDVEMRLNSKVAVRETNTKLTGRQLWTQGLVKDEGEEGIEDDFHGDS-DDAEDAESDE 272
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|953498970|emb|CEG39690.1| (rwd domain-containing protein 1 [Plasmopara halstedii]) HSP 1 Score: 132.88 bits (333), Expect = 6.047e-34 Identity = 83/217 (38.25%), Postives = 119/217 (54.84%), Query Frame = 0
Query: 4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAV 219
T EEQA+E E+LE I MDD LS P Y+V VVP +G+ N+VA++ IP YPD + ++ V +KGL Q +E+++L+ Q+ EN G AM+Y L + +RE+L+E N G DGS H EML+RM +K K A + E A++ E Q+ GTPVT E+F W+ F+ E+ + E K TG+ + G V
Sbjct: 2 TDYHEEQAMEMEALEAIYMDDFTKLSDK-PLTYQVHVVPNQDGDS-NFVALQLKAKIPEKYPDLEPEIEVIVLKGLVDRQVKEIKQLLAQQIEENMGTAMMYTLTEAVREYLVENNREG-NDGSEHQEMLRRMELK----KVAEEKVEAEKLEQANVKGEG---NQREFHGTPVTVETFAAWKAKFDTEVTSIKETSLKKEATAKLTGRQLWSKGLV 208
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|675163443|ref|XP_008890606.1| (hypothetical protein PPTG_00817 [Phytophthora parasitica INRA-310] >gi|566033627|gb|ETI56538.1| hypothetical protein F443_00960 [Phytophthora parasitica P1569] >gi|567971312|gb|ETK96323.1| hypothetical protein L915_00901 [Phytophthora parasitica] >gi|568028833|gb|ETM02769.1| hypothetical protein L917_00856 [Phytophthora parasitica] >gi|568059439|gb|ETM56015.1| hypothetical protein L914_00895 [Phytophthora parasitica] >gi|568109942|gb|ETN24549.1| hypothetical protein PPTG_00817 [Phytophthora parasitica INRA-310] >gi|570337264|gb|ETO85212.1| hypothetical protein F444_00969 [Phytophthora parasitica P1976] >gi|570961357|gb|ETP26336.1| hypothetical protein F441_00936 [Phytophthora parasitica CJ01A1] >gi|570997950|gb|ETP54231.1| hypothetical protein F442_00914 [Phytophthora parasitica P10297] >gi|970663137|gb|KUG00387.1| RWD domain-containing protein 1 [Phytophthora nicotianae]) HSP 1 Score: 132.494 bits (332), Expect = 1.577e-33 Identity = 87/217 (40.09%), Postives = 123/217 (56.68%), Query Frame = 0
Query: 4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAV 219
T +EEQA+E E+LE I MDD LS P Y+V VVP +GE N+VA+ IP YPD + + V KGL+ Q +E++ L+ Q+ EN GMAM+Y L + +RE+L+E N G DGS H EML+RM +K+K E++ + + + A S ++ GTPVT E+F W+ F+AEMA +A + K TG+ N G V
Sbjct: 2 TDYKEEQAMEVEALEAIYMDDFTKLSDE-PLTYQVHVVPNQDGEN-NFVALILKAEIPETYPDLEPKIEVIVKKGLADRQVKEIKELLAQQIEENMGMAMMYTLSEAVREYLVENNREG-NDGSEHQEMLRRMELKKKKEEKVEADKLEQANAEAEES-------RREFHGTPVTVETFAAWKAKFDAEMAPKKKASIKDEASAKLTGRQLWNKGLV 208
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|698792424|ref|XP_009829244.1| (hypothetical protein H257_05922 [Aphanomyces astaci] >gi|698792426|ref|XP_009829245.1| hypothetical protein, variant [Aphanomyces astaci] >gi|574115901|gb|ETV81386.1| hypothetical protein H257_05922 [Aphanomyces astaci] >gi|574115902|gb|ETV81387.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 132.494 bits (332), Expect = 2.202e-33 Identity = 86/218 (39.45%), Postives = 117/218 (53.67%), Query Frame = 0
Query: 4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAVK 220
T EEQ +E E+LE I MDD + S P +V+++P NG G N+VA+ F++P YPD V + KGLS Q +++ L++Q+ EN GMAMVY + + +RE+LIE N G DGS + EML+R + K DT A E A + E + K GTPVT SF W+ AF+ EMA K VG + TG+ GA K
Sbjct: 2 TDYAEEQTMEVEALESIYMDDFAKVQDS-PLSMKVKLIPDQNG-GVNHVALSLVFTMPAKYPDALPLVDIKLEKGLSEPQERDIRELLNQQMEENTGMAMVYTVCEAVREYLIENNREG-NDGSEYQEMLRRQEHRHK-----TDTIAAEAAQAILDKENEGKGPAKSTTGTPVTVASFNAWKAAFDLEMATKTGVKIAVGAEKRLTGRQLWTTGAAK 211
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|673043447|ref|XP_008875684.1| (hypothetical protein H310_10961 [Aphanomyces invadans] >gi|574468473|gb|ETV95491.1| hypothetical protein H310_10961 [Aphanomyces invadans]) HSP 1 Score: 131.724 bits (330), Expect = 3.728e-33 Identity = 86/218 (39.45%), Postives = 121/218 (55.50%), Query Frame = 0
Query: 4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAACAEAKGGVGVAGK-TGKAAGNGGAVK 220
T EEQ +E E+LE I MDD + S P +VR++P G G N+VA+ F++P YPD V + KGLS Q +++ L++Q+ +N G+AMVY + + +RE+LIE N G DGS + EML+R ++K DT A E A + E ++ K GTPVT ESF W+ AF+ EMA + AK VG + TG+ GA K
Sbjct: 2 TDYVEEQMMEVEALESIYMDDFTKVQES-PLSLKVRLIPDQTG-GVNHVAMSLVFTMPAKYPDELPSVDIKLEKGLSEPQERDIRALVNQQMEDNTGIAMVYTVCEAVREYLIENNREG-NDGSEYQEMLRRQEQRQKK-----DTIAAEAAQAVLEKEAESKGVSKPSSGTPVTVESFNAWKAAFDLEMATKSGAKIAVGAEKRLTGRQLWTTGAAK 211
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|1214685711|gb|OWZ02662.1| (hypothetical protein PHMEG_00025735 [Phytophthora megakarya]) HSP 1 Score: 130.183 bits (326), Expect = 1.029e-32 Identity = 76/185 (41.08%), Postives = 112/185 (60.54%), Query Frame = 0
Query: 12 LEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMAAC 196
+E E+LE I MDD LS P Y+V VVP +GEG N+VA+ SIP YPD + ++ V KGL+ SQ +E+++L+ Q+ EN GMAM+Y L + +RE+L+E N G DGS H EML+RM + +K+ + + A+ +E+ +++ GTPVT E+F W+ F+AEMA
Sbjct: 1 MEVEALEAIYMDDFTKLSDE-PLTYQVHVVPNQDGEG-NFVALLLKASIPETYPDIEPEIEVVVKKGLADSQVKEIKQLLTQQIQENMGMAMMYTLSEAVREYLVENNREG-NDGSEHQEMLRRM----ELKKKKEEKVEADKLEQANADDEE---KRREFHGTPVTVETFAAWKAKFDAEMAGT 175
BLAST of EWM28230.1 vs. NCBI_GenBank
Match: gi|567971313|gb|ETK96324.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|570961358|gb|ETP26337.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1]) HSP 1 Score: 128.642 bits (322), Expect = 1.993e-32 Identity = 80/191 (41.88%), Postives = 113/191 (59.16%), Query Frame = 0
Query: 4 TQCEEEQALEAESLECILMDDLEVLSASVPRQYRVRVVPYVNGEGENYVAVKATFSIPPGYPDTKADVSVAAVKGLSTSQCQELERLMDQKATENEGMAMVYLLVDMIREWLIERNVAGATDGSMHAEMLKRMHMKEKDEKRAADTRAGEVASSASLSEEDALMRQKRLEGTPVTPESFLKWRTAFEAEMA 194
T +EEQA+E E+LE I MDD LS P Y+V VVP +GE N+VA+ IP YPD + + V KGL+ Q +E++ L+ Q+ EN GMAM+Y L + +RE+L+E N G DGS H EML+RM +K+K E++ + + + A S ++ GTPVT E+F W+ F+AEMA
Sbjct: 2 TDYKEEQAMEVEALEAIYMDDFTKLSDE-PLTYQVHVVPNQDGEN-NFVALILKAEIPETYPDLEPKIEVIVKKGLADRQVKEIKELLAQQIEENMGMAMMYTLSEAVREYLVENNREG-NDGSEHQEMLRRMELKKKKEEKVEADKLEQANAEAEES-------RREFHGTPVTVETFAAWKAKFDAEMA 182 The following BLAST results are available for this feature:
BLAST of EWM28230.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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