rna2441, rna2441 (mRNA) Nannochloropsis gaditana

Overview
Namerna2441
Unique Namerna2441
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1629
Alignment locationCM002459.1:393337..394963 +

Link to JBrowse

Properties
Property NameValue
Productribosomal large subunit pseudouridine synthase a
Orig transcript idgnl|cribi|Naga_100004g76.9221.mrna
Orig protein idgnl|cribi|Naga_100004g76.9221
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:393337..394963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g76gene2334Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2441rna2441-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28290.1cds2433Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2441 ID=rna2441|Name=rna2441|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp
CCACGCTTCTCCTTATATTTGTCAGCTCGCTAAGAATATCCTTTCTTTTT
AGGCTACATGCAAGCCATCAATAACGGATGGACTTATTCCGCGACTTGTA
TGTCAACCTGTGCGTGTGGTACAAGCGAATAACTTTGTTGTCATCGATAC
GCCTCTCCTCCACCCTGGGAGCCCCTTTCTCTACTAGGACGCGATCCCAG
CTAGTCTGCGACAGATTCAACGCACTCTGCCACACCATTTCCCTTCTTCC
AATTTTTAATACAGTCCAAGGATAGAATGCCGTACGTACGCTCGAATTGG
GAGGGACTCACAAAATTTAATGGTGGCCATAAATTTGAAGTGGGCCATGT
CCACTCCTTCAATGAGGTCAAACTTGCCCGCCCCTTGCAAGCGGGACCAA
AAGGCTGTTTCCTTCACGTGACGATGGAAAAGGATGCTCGCGTTTCGTAC
ATGGAGATGGTAACCTCGGCTAGGGAGGTAGAGATGTATGTCCTTAAGGG
TGGCCACGGCGCCTCGGGAGAGTACTCGAAGGTTGGCGGCCAAAGAGGCC
GCCCCGCAGTGGACCACCCCTATAAGTACCATTACAAATTCACTTCCTCA
GACCTTCCCGATGTACCTGTGGCATTAGTGCAGCTTCGTCTCACCCCGCA
TGAGGAAGATGCGCGAGAGGTGTACCTTTTTCGACTGTCGGTACTAGTGG
GAGAGGCCAACTCGCGGCATCGTTCCAACATTTCCAGAGGCATCGGCGGC
CTGCAAGATGCATTGACAGTCAGTGGAAACGGCAAGTATCTAAGTGGACA
CAGCTCTACGAATACGAGCATGGTGCCGATGAGCACCGGCAGGAGGAATT
CTAGCTCACAGGGGCCACAGCAAGGGCAATACGGTAGCAGCGGCGTGGTA
GCAACGCGGAACAACGAAAATCAGGTCGTGCCGGCTGGCAGTGGGGCAGA
GGGAGCAGTCGTGGCTGATGCTCTGAACGACGTAATGGGAAAGATGTTGA
CGGTGGTGAGTAGGAAAACGAAAGGGTACGTAGGGTCGACATACAAAAAA
ACAGAAGACAAGATATCAGCTCGGATGAAGTCCATAGAGGCGAAAATTTC
TGGCTTCGAGGAAGTAGTGGGTCAAAACTTGGAGCGAAGACTGCTAGATT
TGGAGCACGTGATGGCCACATTGAACGAGAGGATCTCGCCCAAACTTTCT
CCCCTTGCGCCGGAAGGGAAAAAGCAAGGGCAGTCCCTGGCGGCCCCGGG
AAAGCGAGATTCGGACAGGTCCGACTCGGTCAATTGCGAGGGAGGAGTCG
AAGAGAGCAAAGACGGACATGCACCGCAAATGAGCCGCAACCAGCAGCCT
TGTGAACCTTAAACTGTGTAATTACGATAAATAGATCAGATTTGTCGAGC
GCGCCGTTATGGGGTGGAAGGGCACAAAGCGTGAAGCACATGCTTTCCGC
GCCCCACATTGGCAGTAGAAGTAAATCCGTTGACGCTTGCTATGATATCC
GTACAATTCCCAGCTGTCAGATTCATGGGTTTATCTATTTTGTGATTAAA
TACTTTGACTTGTCTTTGTCTCCACTTATATCACTGCACACGCGTAAACT
TTAAGGCAATGTATATTCGAGCTATCTCC
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protein sequence of rna2441

>rna2441-protein ID=rna2441-protein|Name=rna2441|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MERPENPPSDDYLLALSAKTELQILYVDHSIIIVNKPFGLNTIPGNSLVK
EETINPNGSGSSSTRGAAQDTNDIRSSTEQFMSKKRERTHQELWMDMLTQ
DRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAER
EDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVC
VLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDR
ETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRV
HMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAP
IVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF
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mRNA from alignment at CM002459.1:393337..394963+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2441 ID=rna2441|Name=rna2441|organism=Nannochloropsis gaditana|type=mRNA|length=1627bp|location=Sequence derived from alignment at CM002459.1:393337..394963+ (Nannochloropsis gaditana)
ACAGCGTGCACACACACATACACTCCTAGATTCTCCATGGACATGATTTT
AAATGACATTCGCTCGTATTAACGAGAAATCGGAGGATTGAGCCCGCTAA
CATGGAGCGTCCAGAAAACCCACCTTCGGATGACTACCTCTTGGCCCTTT
CGGCCAAGACAGAATTGCAAATACTTTACGTGGATCATAGCATTATAATC
GTGAACAAACCATTCGGTCTCAACACAATTCCCGGGAATTCTTTGGTGAA
AGAAGAAACCATAAACCCCAATGGATCAGGAAGCTCATCAACTCGAGGCG
CTGCTCAAGACACGAACGATATAAGATCAAGCACTGAGCAATTTATGAGC
AAGAAACGTGAACGTACGCACCAGGAACTTTGGATGGATATGCTTACACA
GGATCGTATTTCTCTGGAACAATCCATGAACATGCCTGCGGACTCCCATC
TTGCGCAATATTTCGCCAGCCTGATGGCACACAAATCCTCAGTACCTCGT
AAACGGCAAACATTTCTAGACTGGGGCCTTCGTACCTTGAAGGCGGAGCG
TGAAGATTTAGTAGTGCTGTACGAATGCTTAAATCGGGCTTTtgaggcaa
gggagggccaACGCGCTGATTCTGTTCAGACGCGCTTGCTCCATGTCTTT
CAAGTGATCAAGACAGTACATCGCTTGGATTGCGAAACTTCAGGAGTCTG
TGTTCTAGCCCGCACTCTTGAAGCTGCAAGAAGCCTTAGCACACAATTTC
GAGAGAAGAGAGTTACCAAAAGATATATCGCTTTAGTCGACAGTAATTTG
CAATGGCCACAGGACCAGGGAGAGATATTTTTGCCCATCCGCCCGGATAG
AGAGACACGTCCCAAGCAGATGATAGACGcacaggatggaaaggattGCC
GGACCCTCTTTCGCGTGCTAGGCACACAGAGAATGGGAGATAAGGAGGTA
TGTAGGGTGGAGCTAACGCCGCTGACAGGGAGGACCCACCAACTGCGGGT
CCACATGGCGGCTCTAGGTCACCCTATAGTTGGCGACAGCATATACTCAC
TGCAAGACAGACTGAAGCCGTCCGAAATGCTGCCATTCCTGAAGCCTTTT
CAAGAAAATATTGGCTGTGTTTATGAAATCGAGGAGAAAAATAAAGCGCC
CATCGTCTCTCCCGAAGGCGCAACACGCAGACATGTCGACGCCCGCCTCC
ATTTGCATGCAGAAGTACTATGCTTTGACCACCCCGAGTCAGGCGAGCGC
CTTTGCTTTGTGGCCCCAGCCTCGTTCTAGTACTCTTTGCAGGCCCTTTT
TGGGCGCGACATGGATGCGAAGATAACAAAATTCTCGTGCACAAGTTCTT
TCGTGTAAAAACAAGGCTGTACAATGTCAAAGAGTCATCGGTCACCAAAA
CACTAGCGGTGGAACAGGACCCATACGCCGAGAAATCTCAtatcccgccc
ttcttctccacaCAGTTCCTTTTCGTCTTTCGTTTTGAGCCGTTCCCCTT
TGCATCAcatcttctcttccttccgtcAGGCCCACTCTTGTGATCATGAA
AGCAGCCTCGAAAGCGGCTTCCTGCAGCATTTCCGTCTGGGCTATCGGCC
CCTCGTGGGCTCGGTCACCCTCCATGC
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Coding sequence (CDS) from alignment at CM002459.1:393337..394963+

>rna2441 ID=rna2441|Name=rna2441|organism=Nannochloropsis gaditana|type=CDS|length=1179bp|location=Sequence derived from alignment at CM002459.1:393337..394963+ (Nannochloropsis gaditana)
ATGGAGCGTCCAGAAAACCCACCTTCGGATGACTACCTCTTGGCCCTTTC
GGCCAAGACAGAATTGCAAATACTTTACGTGGATCATAGCATTATAATCG
TGAACAAACCATTCGGTCTCAACACAATTCCCGGGAATTCTTTGGTGAAA
GAAGAAACCATAAACCCCAATGGATCAGGAAGCTCATCAACTCGAGGCGC
TGCTCAAGACACGAACGATATAAGATCAAGCACTGAGCAATTTATGAGCA
AGAAACGTGAACGTACGCACCAGGAACTTTGGATGGATATGCTTACACAG
GATCGTATTTCTCTGGAACAATCCATGAACATGCCTGCGGACTCCCATCT
TGCGCAATATTTCGCCAGCCTGATGGCACACAAATCCTCAGTACCTCGTA
AACGGCAAACATTTCTAGACTGGGGCCTTCGTACCTTGAAGGCGGAGCGT
GAAGATTTAGTAGTGCTGTACGAATGCTTAAATCGGGCTTTtgaggcaag
ggagggccaACGCGCTGATTCTGTTCAGACGCGCTTGCTCCATGTCTTTC
AAGTGATCAAGACAGTACATCGCTTGGATTGCGAAACTTCAGGAGTCTGT
GTTCTAGCCCGCACTCTTGAAGCTGCAAGAAGCCTTAGCACACAATTTCG
AGAGAAGAGAGTTACCAAAAGATATATCGCTTTAGTCGACAGTAATTTGC
AATGGCCACAGGACCAGGGAGAGATATTTTTGCCCATCCGCCCGGATAGA
GAGACACGTCCCAAGCAGATGATAGACGcacaggatggaaaggattGCCG
GACCCTCTTTCGCGTGCTAGGCACACAGAGAATGGGAGATAAGGAGGTAT
GTAGGGTGGAGCTAACGCCGCTGACAGGGAGGACCCACCAACTGCGGGTC
CACATGGCGGCTCTAGGTCACCCTATAGTTGGCGACAGCATATACTCACT
GCAAGACAGACTGAAGCCGTCCGAAATGCTGCCATTCCTGAAGCCTTTTC
AAGAAAATATTGGCTGTGTTTATGAAATCGAGGAGAAAAATAAAGCGCCC
ATCGTCTCTCCCGAAGGCGCAACACGCAGACATGTCGACGCCCGCCTCCA
TTTGCATGCAGAAGTACTATGCTTTGACCACCCCGAGTCAGGCGAGCGCC
TTTGCTTTGTGGCCCCAGCCTCGTTCTAG
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Synonyms
Publications