EWM28290.1, cds2433 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|585110635|gb|EWM28290.1| (ribosomal large subunit pseudouridine synthase a [Nannochloropsis gaditana]) HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0 Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query: 1 MERPENPPSDDYLLALSAKTELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGSGSSSTRGAAQDTNDIRSSTEQFMSKKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
MERPENPPSDDYLLALSAKTELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGSGSSSTRGAAQDTNDIRSSTEQFMSKKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF
Sbjct: 1 MERPENPPSDDYLLALSAKTELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGSGSSSTRGAAQDTNDIRSSTEQFMSKKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1140861245|ref|WP_076716452.1| (RNA pseudouridine synthase [Motiliproteus sp. MSK22-1] >gi|1134400944|gb|OMH38764.1| RNA pseudouridine synthase [Motiliproteus sp. MSK22-1]) HSP 1 Score: 153.295 bits (386), Expect = 4.100e-41 Identity = 92/227 (40.53%), Postives = 118/227 (51.98%), Query Frame = 0
Query: 166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
R DSV RL F I+ VHRLDC TSGV VLA ++ R+LS QF+E++ KRYIA + Q D G + LP+R D E RPKQM+D + GK T ++V+ ++ RV LTP+TGR+HQLRVHM A+GHPI GD Y+ + L ++ RLHLHAE L HP SGE++CF AP F
Sbjct: 25 GRGPNNQDSVLLRLQQQFPTIRIVHRLDCATSGVMVLALDADSHRALSIQFQERKTAKRYIARIYG--QPNNDSGSVDLPLRCDWENRPKQMVDFEQGKSALTHWQVIEY----SEDCTRVALTPVTGRSHQLRVHMLAMGHPIAGDRFYASGEALTAAD---------------------------------------RLHLHAESLELFHPLSGEKVCFTAPCPF 206
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|298713781|emb|CBJ27153.1| (ribosomal large subunit pseudouridine synthase A [Ectocarpus siliculosus]) HSP 1 Score: 155.992 bits (393), Expect = 1.276e-40 Identity = 109/377 (28.91%), Postives = 174/377 (46.15%), Query Frame = 0
Query: 20 TELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGSGSSSTRGAAQDTNDIRSSTEQFMSKKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAERED----LVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
+++ +++ D I+++NKP GL T+PG ++ E + R E KR+R QE W D++ SL + + L +++VPRKR F ++ TL E E+ L++ ++ + G D + TR+ + + VHRLD +TSG+ V+A T+EAAR + QFRE+ +K Y A+++ + GE+ +RPD + RPKQM + G + T + + +R D+ V+ TP+TGRTHQ+R+H LGHP++GDS+Y +PEG + RL LHA + F HP +GE + F P F
Sbjct: 22 SDVDVIFSDPDIVVLNKPTGLRTVPGKAVGPEA--------------------ETRVHVEWHSGTKRQR--QEFWTDVVHTACESLLNDEKTEGEEEFRDHLRRLTK-ENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERI--KRKEDR--TWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYG------------------------------------TPEGTAK---SERLLLHARRISFPHPRTGETVEFECPPPF 332
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1176595966|ref|WP_082422956.1| (bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas sp. P1-26] >gi|940464828|gb|KPZ73024.1| Ribosomal large subunit pseudouridine synthase A [Pseudoalteromonas sp. P1-26]) HSP 1 Score: 145.206 bits (365), Expect = 7.189e-38 Identity = 90/227 (39.65%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
++ + AD + R+ VF K VHRLD TSG+ LA EA R+LS QF++++ KRYIA V L+ Q+ G + LPI D RPKQM+D +GK T F+VL + + RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+ PE + RL LHAE+L HP SGE L F A F
Sbjct: 36 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPIICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MAPRLQLHAEMLTLAHPASGETLIFEAAPEF 217
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1024541599|gb|KZY49665.1| (RNA pseudouridine synthase [Pseudoalteromonas shioyasakiensis]) HSP 1 Score: 144.436 bits (363), Expect = 1.225e-37 Identity = 90/227 (39.65%), Postives = 119/227 (52.42%), Query Frame = 0
Query: 166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
++ + AD + R+ VF K VHRLD TSG+ LA EA R+LS QF++++ KRYIA V L+ Q+ G + LP+ D RPKQM+D +GK T F+VL + + RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+ KA ++P RL LHAE+L HP SGE L F A F
Sbjct: 28 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA-----------------------------HPKAFAMAP----------RLQLHAEMLTLAHPASGETLIFEAAPEF 209
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1176562164|ref|WP_082389154.1| (bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas lipolytica]) HSP 1 Score: 144.436 bits (363), Expect = 1.458e-37 Identity = 89/227 (39.21%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
++ + AD + R+ VF K VHRLD TSG+ LA EA R+LS QF++++ KRYIA V L+ Q+ G + LP+ D RPKQM+D +GK T F+VL + + RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+ PE + RL LHAE+L HP SGE L F A F
Sbjct: 36 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEHE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MSPRLQLHAEMLTLAHPASGETLIFEAAPEF 217
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|936650394|gb|KPM85253.1| (pseudouridine synthase [Pseudoalteromonas lipolytica]) HSP 1 Score: 144.05 bits (362), Expect = 1.681e-37 Identity = 89/227 (39.21%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
++ + AD + R+ VF K VHRLD TSG+ LA EA R+LS QF++++ KRYIA V L+ Q+ G + LP+ D RPKQM+D +GK T F+VL + + RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+ PE + RL LHAE+L HP SGE L F A F
Sbjct: 28 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEHE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MSPRLQLHAEMLTLAHPASGETLIFEAAPEF 209
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1176574651|ref|WP_082401641.1| (MULTISPECIES: bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas] >gi|939944900|gb|KPW03786.1| Ribosomal large subunit pseudouridine synthase A [Pseudoalteromonas sp. P1-8]) HSP 1 Score: 144.436 bits (363), Expect = 1.726e-37 Identity = 89/227 (39.21%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
++ + AD + R+ VF K VHRLD TSG+ LA EA R+LS QF++++ KRYIA V L+ Q+ G + LP+ D RPKQM+D +GK T F+VL + + RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+ PE + RL LHAE+L HP SGE L F A F
Sbjct: 36 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MAPRLQLHAEMLTLAHPASGETLIFEAAPEF 217
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|937127756|ref|WP_054562765.1| (bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas sp. P1-8] >gi|936642063|gb|KPM77021.1| pseudouridine synthase [Pseudoalteromonas sp. UCD-33C]) HSP 1 Score: 143.665 bits (361), Expect = 2.357e-37 Identity = 89/227 (39.21%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
++ + AD + R+ VF K VHRLD TSG+ LA EA R+LS QF++++ KRYIA V L+ Q+ G + LP+ D RPKQM+D +GK T F+VL + + RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+ PE + RL LHAE+L HP SGE L F A F
Sbjct: 28 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MAPRLQLHAEMLTLAHPASGETLIFEAAPEF 209
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1177375158|ref|WP_082665680.1| (bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas sp. XI10]) HSP 1 Score: 143.665 bits (361), Expect = 2.631e-37 Identity = 88/227 (38.77%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
++ + AD + R+ VF K VHRLD TSG+ LA EA R+LS QF++++ KRYIA + L+ Q+ G + LP+ D RPKQM+D +GK T F+VL + + RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+ PE + RL LHAE+L HP SGE L F A F
Sbjct: 36 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARIFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MAPRLQLHAEMLTLAHPASGETLIFEAAPEF 217 The following BLAST results are available for this feature:
BLAST of EWM28290.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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