EWM28290.1, cds2433 (CDS) Nannochloropsis gaditana

Overview
NameEWM28290.1
Unique Namecds2433
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:393438..394616 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28290.1
Productribosomal large subunit pseudouridine synthase a
Orig transcript idgnl|cribi|Naga_100004g76.9221.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:393438..394616 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR006145PsdUridine_synth_RsuA/RluD
Homology
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|585110635|gb|EWM28290.1| (ribosomal large subunit pseudouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 816.994 bits (2109), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MERPENPPSDDYLLALSAKTELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGSGSSSTRGAAQDTNDIRSSTEQFMSKKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
            MERPENPPSDDYLLALSAKTELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGSGSSSTRGAAQDTNDIRSSTEQFMSKKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF
Sbjct:    1 MERPENPPSDDYLLALSAKTELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGSGSSSTRGAAQDTNDIRSSTEQFMSKKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAEREDLVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392          
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1140861245|ref|WP_076716452.1| (RNA pseudouridine synthase [Motiliproteus sp. MSK22-1] >gi|1134400944|gb|OMH38764.1| RNA pseudouridine synthase [Motiliproteus sp. MSK22-1])

HSP 1 Score: 153.295 bits (386), Expect = 4.100e-41
Identity = 92/227 (40.53%), Postives = 118/227 (51.98%), Query Frame = 0
Query:  166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
             R     DSV  RL   F  I+ VHRLDC TSGV VLA   ++ R+LS QF+E++  KRYIA +    Q   D G + LP+R D E RPKQM+D + GK   T ++V+       ++  RV LTP+TGR+HQLRVHM A+GHPI GD  Y+  + L  ++                                       RLHLHAE L   HP SGE++CF AP  F
Sbjct:   25 GRGPNNQDSVLLRLQQQFPTIRIVHRLDCATSGVMVLALDADSHRALSIQFQERKTAKRYIARIYG--QPNNDSGSVDLPLRCDWENRPKQMVDFEQGKSALTHWQVIEY----SEDCTRVALTPVTGRSHQLRVHMLAMGHPIAGDRFYASGEALTAAD---------------------------------------RLHLHAESLELFHPLSGEKVCFTAPCPF 206          
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|298713781|emb|CBJ27153.1| (ribosomal large subunit pseudouridine synthase A [Ectocarpus siliculosus])

HSP 1 Score: 155.992 bits (393), Expect = 1.276e-40
Identity = 109/377 (28.91%), Postives = 174/377 (46.15%), Query Frame = 0
Query:   20 TELQILYVDHSIIIVNKPFGLNTIPGNSLVKEETINPNGSGSSSTRGAAQDTNDIRSSTEQFMSKKRERTHQELWMDMLTQDRISLEQSMNMPADSHLAQYFASLMAHKSSVPRKRQTFLDWGLRTLKAERED----LVVLYECLNRAFEAREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
            +++ +++ D  I+++NKP GL T+PG ++  E                     + R   E     KR+R  QE W D++     SL        +     +   L   +++VPRKR  F ++   TL  E E+       L++ ++   +   G   D + TR+   +   + VHRLD +TSG+ V+A T+EAAR +  QFRE+  +K Y A+++  +      GE+   +RPD + RPKQM   + G +  T +  +  +R  D+    V+ TP+TGRTHQ+R+H   LGHP++GDS+Y                                     +PEG  +     RL LHA  + F HP +GE + F  P  F
Sbjct:   22 SDVDVIFSDPDIVVLNKPTGLRTVPGKAVGPEA--------------------ETRVHVEWHSGTKRQR--QEFWTDVVHTACESLLNDEKTEGEEEFRDHLRRLTK-ENNVPRKRSKFHNYTAVTLGLEGEEGDKVSARLWDTVDGHLKKEVGPGVDCLLTRVQSRWPEARHVHRLDQDTSGLVVMALTVEAAREMCRQFRERVPSKTYTAVLEGRMAKTPKSGEVTAKLRPDTDNRPKQMFCEEKGNEAHTNWERI--KRKEDR--TWVDFTPVTGRTHQIRMHAVHLGHPVMGDSLYG------------------------------------TPEGTAK---SERLLLHARRISFPHPRTGETVEFECPPPF 332          
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1176595966|ref|WP_082422956.1| (bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas sp. P1-26] >gi|940464828|gb|KPZ73024.1| Ribosomal large subunit pseudouridine synthase A [Pseudoalteromonas sp. P1-26])

HSP 1 Score: 145.206 bits (365), Expect = 7.189e-38
Identity = 90/227 (39.65%), Postives = 117/227 (51.54%), Query Frame = 0
Query:  166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
             ++ + AD +  R+  VF   K VHRLD  TSG+  LA   EA R+LS QF++++  KRYIA V   L+  Q+ G + LPI  D   RPKQM+D  +GK   T F+VL  +    +   RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+                                     PE      +  RL LHAE+L   HP SGE L F A   F
Sbjct:   36 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPIICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MAPRLQLHAEMLTLAHPASGETLIFEAAPEF 217          
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1024541599|gb|KZY49665.1| (RNA pseudouridine synthase [Pseudoalteromonas shioyasakiensis])

HSP 1 Score: 144.436 bits (363), Expect = 1.225e-37
Identity = 90/227 (39.65%), Postives = 119/227 (52.42%), Query Frame = 0
Query:  166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
             ++ + AD +  R+  VF   K VHRLD  TSG+  LA   EA R+LS QF++++  KRYIA V   L+  Q+ G + LP+  D   RPKQM+D  +GK   T F+VL  +    +   RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+                               KA  ++P          RL LHAE+L   HP SGE L F A   F
Sbjct:   28 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA-----------------------------HPKAFAMAP----------RLQLHAEMLTLAHPASGETLIFEAAPEF 209          
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1176562164|ref|WP_082389154.1| (bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas lipolytica])

HSP 1 Score: 144.436 bits (363), Expect = 1.458e-37
Identity = 89/227 (39.21%), Postives = 117/227 (51.54%), Query Frame = 0
Query:  166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
             ++ + AD +  R+  VF   K VHRLD  TSG+  LA   EA R+LS QF++++  KRYIA V   L+  Q+ G + LP+  D   RPKQM+D  +GK   T F+VL  +    +   RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+                                     PE      +  RL LHAE+L   HP SGE L F A   F
Sbjct:   36 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEHE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MSPRLQLHAEMLTLAHPASGETLIFEAAPEF 217          
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|936650394|gb|KPM85253.1| (pseudouridine synthase [Pseudoalteromonas lipolytica])

HSP 1 Score: 144.05 bits (362), Expect = 1.681e-37
Identity = 89/227 (39.21%), Postives = 117/227 (51.54%), Query Frame = 0
Query:  166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
             ++ + AD +  R+  VF   K VHRLD  TSG+  LA   EA R+LS QF++++  KRYIA V   L+  Q+ G + LP+  D   RPKQM+D  +GK   T F+VL  +    +   RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+                                     PE      +  RL LHAE+L   HP SGE L F A   F
Sbjct:   28 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEHE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MSPRLQLHAEMLTLAHPASGETLIFEAAPEF 209          
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1176574651|ref|WP_082401641.1| (MULTISPECIES: bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas] >gi|939944900|gb|KPW03786.1| Ribosomal large subunit pseudouridine synthase A [Pseudoalteromonas sp. P1-8])

HSP 1 Score: 144.436 bits (363), Expect = 1.726e-37
Identity = 89/227 (39.21%), Postives = 117/227 (51.54%), Query Frame = 0
Query:  166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
             ++ + AD +  R+  VF   K VHRLD  TSG+  LA   EA R+LS QF++++  KRYIA V   L+  Q+ G + LP+  D   RPKQM+D  +GK   T F+VL  +    +   RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+                                     PE      +  RL LHAE+L   HP SGE L F A   F
Sbjct:   36 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MAPRLQLHAEMLTLAHPASGETLIFEAAPEF 217          
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|937127756|ref|WP_054562765.1| (bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas sp. P1-8] >gi|936642063|gb|KPM77021.1| pseudouridine synthase [Pseudoalteromonas sp. UCD-33C])

HSP 1 Score: 143.665 bits (361), Expect = 2.357e-37
Identity = 89/227 (39.21%), Postives = 117/227 (51.54%), Query Frame = 0
Query:  166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
             ++ + AD +  R+  VF   K VHRLD  TSG+  LA   EA R+LS QF++++  KRYIA V   L+  Q+ G + LP+  D   RPKQM+D  +GK   T F+VL  +    +   RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+                                     PE      +  RL LHAE+L   HP SGE L F A   F
Sbjct:   28 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARVFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MAPRLQLHAEMLTLAHPASGETLIFEAAPEF 209          
BLAST of EWM28290.1 vs. NCBI_GenBank
Match: gi|1177375158|ref|WP_082665680.1| (bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA [Pseudoalteromonas sp. XI10])

HSP 1 Score: 143.665 bits (361), Expect = 2.631e-37
Identity = 88/227 (38.77%), Postives = 117/227 (51.54%), Query Frame = 0
Query:  166 AREGQRADSVQTRLLHVFQVIKTVHRLDCETSGVCVLARTLEAARSLSTQFREKRVTKRYIALVDSNLQWPQDQGEIFLPIRPDRETRPKQMIDAQDGKDCRTLFRVLGTQRMGDKEVCRVELTPLTGRTHQLRVHMAALGHPIVGDSIYSLQDRLKPSEMLPFLKPFQENIGCVYEIEEKNKAPIVSPEGATRRHVDARLHLHAEVLCFDHPESGERLCFVAPASF 392
             ++ + AD +  R+  VF   K VHRLD  TSG+  LA   EA R+LS QF++++  KRYIA +   L+  Q+ G + LP+  D   RPKQM+D  +GK   T F+VL  +    +   RVELTP+TGR+HQLRVHM +LGHPI+GD +Y+                                     PE      +  RL LHAE+L   HP SGE L F A   F
Sbjct:   36 GKDPKHADCLIARINRVFPTAKIVHRLDMATSGIICLAMHKEAHRNLSIQFQDRKTAKRYIARIFGKLE--QETGSVDLPLICDWPNRPKQMVDHDNGKPSLTHFKVLEYE----QNATRVELTPITGRSHQLRVHMLSLGHPILGDKLYA------------------------------------HPEAFA---MAPRLQLHAEMLTLAHPASGETLIFEAAPEF 217          
The following BLAST results are available for this feature:
BLAST of EWM28290.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110635|gb|EWM28290.1|0.000e+0100.00ribosomal large subunit pseudouridine synthase a [... [more]
gi|1140861245|ref|WP_076716452.1|4.100e-4140.53RNA pseudouridine synthase [Motiliproteus sp. MSK2... [more]
gi|298713781|emb|CBJ27153.1|1.276e-4028.91ribosomal large subunit pseudouridine synthase A [... [more]
gi|1176595966|ref|WP_082422956.1|7.189e-3839.65bifunctional tRNA pseudouridine(32) synthase/ribos... [more]
gi|1024541599|gb|KZY49665.1|1.225e-3739.65RNA pseudouridine synthase [Pseudoalteromonas shio... [more]
gi|1176562164|ref|WP_082389154.1|1.458e-3739.21bifunctional tRNA pseudouridine(32) synthase/ribos... [more]
gi|936650394|gb|KPM85253.1|1.681e-3739.21pseudouridine synthase [Pseudoalteromonas lipolyti... [more]
gi|1176574651|ref|WP_082401641.1|1.726e-3739.21MULTISPECIES: bifunctional tRNA pseudouridine(32) ... [more]
gi|937127756|ref|WP_054562765.1|2.357e-3739.21bifunctional tRNA pseudouridine(32) synthase/ribos... [more]
gi|1177375158|ref|WP_082665680.1|2.631e-3738.77bifunctional tRNA pseudouridine(32) synthase/ribos... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2441rna2441Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications