rna2440, rna2440 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2440
Unique Name	rna2440
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2349
Alignment location	CM002459.1:391241..393207 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g75.9143.mrna
Orig protein id	gnl\|cribi\|Naga_100004g75.9143
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:391241..393207 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g75	gene2333	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2440	rna2440-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28212.1	cds2432	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:391241..393207-
coding sequence from alignment at CM002459.1:391241..393207-

mRNA sequence

>rna2440 ID=rna2440|Name=rna2440|organism=Nannochloropsis gaditana|type=mRNA|length=2349bp
ACTGCCTCCTGATGAAAACGCCGTGTTCTTTCATGCTGTACTGGTCGCCC
TGACATCAGTATCTTGAAATAAGTGTCCACGTGCCAGCTTTCGCTTGTTA
TGCTCGCCACAATGGGTCATTTCTCACATTCAACGTTCCCTCACGCAGAG
CGTAGTGACTCGAGTTATGGCAACTCCCCTTCCGCCCGAGGCCCCACCGG
TACATTCTCTCATACAGAAGGGAGCGATGTTGCACAAATTCTCTGTGGTT
GACGACAGCAGTAATGCAACCTTGATTGGGACGTTTCTGGATGACACTCA
AGGCCCTCCAAGTCAGTCAATCCTCAATCATCTCATATGCCGCAATGAGT
ACGAGAAGAACCTTCCCCTCGTTACCTCCCTCAGCTTTTTTGGACTCGTG
GCTTATTCGAAAGAGAAGGATTACAGACGTGTGAGTGATTTTGTCAGCTA
TCTGCAGGGTCGGAAGAAAGCTGCCAAGGTTCAATTGGATAAAGTAGGGA
CGGTCGGCTACCTCTTCCCGGGGCCCTCCCCCACCACTCCCAGCGGCGTT
CCCTGCTTGCGGTGCCACTACCAGCCCAACCACCCCCTTCCAACGACTGA
CAAAAAGAAGCGCGCTGCCCCGACGTCACCTGCGGCTAGGACCATAGATC
CAAACTCAGCACACGACACGGGCATGGCCCCTACATCTCCTCCGGCTGAG
TCGACGGCAAAACGGGGCCGGACCTCGGTACCGCGGGCTAAGTTTACGTA
CTTGCCGCCAGATCCACTACCGGTCTCAACAACAAGCCCAACGACTTCCC
AAGAGTCAGACGAGAACGCTGTCACCCCCTCCCTTGGGGGAGAAGAGTCG
AGCAGCCACACCTGTCCTCCTTCCCCGCCCCCGGCCCTCCCCGACCCGTC
CCAATTCCCTCGCAGCCGGGACCCGCGGTTTGCCTATGCGCCTCCAACTC
CCGTGGAAGGGCAAGTCGTCCCGCCCTTTTACGACGACCCGGGCTCGTGT
CCGGTCGTGCGGGGACTCGAGCCGCCCGAGGAGGCGGACGTCTCGAGAGG
GGGGTCCTCGGGATACCCCACGAGCGCAAAGGCCGACGACACCGGCAAGG
ATGCAGGAGTCCTTGGGAGAAGAGCTGCAGCGCCATCGACGGAGACGGGC
AACTCTGGATGGGGCAAGGACCAGCGCGTGGCGGAAGGGTTCTACAATCA
GCTCCGGCGGGAGAAGGGGGCTCGGAACCAGAGTCTGGTCTTCCACCTGC
GCAAGCTCAACAACTGGGTCAAGTCCCAGCTCATCAATGGCCTGCGACCT
GCCACCTCGGAGACGGGGCAAGGGCAAGGGAGGCGGGAGCTTGAGGTCCT
GGACCTCGCCTGTGGGAAGGGCGGAGACTTCACCAAGTGGCGGGAGGTGT
CGCGTCGGTTCCCCGTCGCCCGCTACGTGGGCGTCGACATCGCCAAGACC
TCCTTGATAGACGCGATCGGTCGATACCATCAGGACAGGCACATTCGAGC
GGCCTTGGGTGCGACGCTGACGTTGGCCTGCGCGGATTTGGGGAGCATGG
ACCTGGTGGAGGACGAGCTGGAGGTGTGGGAGGCTACAGAGGACGCCTGG
AGCCGGCGGCCCTTGCTCGACGAAGGCGACCTTTTCGACGCTGTGACCAT
GCAGTTTGCCTTGCACTACATGTTCGAGGACGAGGGGCGTGCCCGCTTTT
TTTTGAAAACGGTGGCCCGACACCTCCGGGTAGGCGGCACCTTCATCGCC
ACCACGGTGGACGCGCGGGTGGTGGTGGAGATGATGGCGGGGTTGGGGAG
GAAGGAAGAAGGTGGGGAGTGGGTGGCACGTTTGGTCGACGAAGAGAAGC
GGGAATTGTGCCGTCTTCAAGTGGATGACGCCACGTATTGGCAGCTTTTC
AGGCCTTGTCCTGGAATGCAAGAGGGGTCAGAAGAGCAAAGCAAGGACGA
GCAAGTCGGAGGAGACAGTCCTTTTTGTGGGCTGCGGTACAAATTTCTGT
TGAAGGACGGTTCCGAGGAGGACGGCGCTGGCGATGCAGTGAATGCCCCC
GAGTGGATGATTCCTTTGCCTTTATTGGAGGCGGCGGCTGGAGAGTACGG
TCTGAGGCTAGAGCAGGCGCAGAATTTCCACGAGCTCGTGGAAGAGCACA
GGGCCCAAGCCGACGGGAAGAGAGGGGGGATACACTGGCTGAATTATCAG
GGTAGTATCAGTCCAATAGAATGGGAGATAGCTCGAATATACATTGCCTT
AAAGTTTACGCGTGTGCAGTGATATAAGTGGAGACAAAGACAAGTCAAAG
TATTTAATCACAAAATAGATAAACCCATGAATCTGACAGCTGGGAATTG

protein sequence of rna2440

>rna2440-protein ID=rna2440-protein|Name=rna2440|organism=Nannochloropsis gaditana|type=polypeptide|length=361bp
MPYVRSNWEGLTKFNGGHKFEVGHVHSFNEVKLARPLQAGPKGCFLHVTM
EKDARVSYMEMVTSAREVEMYVLKGGHGASGEYSKVGGQRGRPAVDHPYK
YHYKFTSSDLPDVPVALVQLRLTPHEEDAREVYLFRLSVLVGEANSRHRS
NISRGIGGLQDALTVSGNGKYLSGHSSTNTSMVPMSTGRRNSSSQGPQQG
QYGSSGVVATRNNENQVVPAGSGAEGAVVADALNDVMGKMLTVVSRKTKG
YVGSTYKKTEDKISARMKSIEAKISGFEEVVGQNLERRLLDLEHVMATLN
ERISPKLSPLAPEGKKQGQSLAAPGKRDSDRSDSVNCEGGVEESKDGHAP
QMSRNQQPCEP

mRNA from alignment at CM002459.1:391241..393207-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2440 ID=rna2440|Name=rna2440|organism=Nannochloropsis gaditana|type=mRNA|length=1967bp|location=Sequence derived from alignment at CM002459.1:391241..393207- (Nannochloropsis gaditana)
CCACGCTTCTCCTTATATTTGTCAGCTCGCTAAGAATATCCTTTCTTTTT
AGGCTACATGCAAGCCATCAATAACGGATGGACTTATTCCGCGACTTGTA
TGTCAACCTGTGCGTGTGGTACAAGCGAATAACTTTGTTGTCATCGATAC
GCCTCTCCTCCACCCTGGGAGCCCCTTTCTCTACTAGGACGCGATCCCAG
CTAGTCTGCGACAGATTCAACGCACTCTGCCACACCATTTCCCTTCTTCC
AATTTTTAATACAGTCCAAGGATAGAATGCCGTACGTACGCTCGAATTGG
GAGGGACTCACAAAATTTAATGGTGGCCATAAATTTGAAGTGGGCCATGT
CCACTCCTTCAATGAGGTCAAACTTGCCCGCCCCTTGCAAGCGGGACCAA
AAGGCTGTTTCCTTCACGGTACGTCAACAATTGTCAGAGTTTAGGCCCTT
TGGTTAAAAATTATAAGAATGATTCAACGTAAAAATAGGGGTACGGGGCT
CCATGCATGCATGTGCACGTCCTTCGGCTCCATTTGGGAAGTCAAGCGGA
CAGCTCTTATAGCAAAGATGACACCTTAGTACTTCTCCATAGTTTTTGAA
ACCCATTGTCAGTCCTCTCAAGGTTGTGCATCGTTACTCTCGAGTGATTG
CCGCAGTGAGGTGTTTTTTTGTGTGAAAACTTATCCAGAACTGACGCTTG
TTCACCACACGCACATTGTCCAACGCACTTTCTGACGAACTACCACCCTT
CAACAGTGACGATGGAAAAGGATGCTCGCGTTTCGTACATGGAGATGGTA
ACCTCGGCTAGGGAGGTAGAGATGTATGTCCTTAAGGGTGGCCACGGCGC
CTCGGGAGAGTACTCGAAGGTTGGCGGCCAAAGAGGCCGCCCCGCAGTGG
ACCACCCCTATAAGTACCATTACAAATTCACTTCCTCAGACCTTCCCGAT
GTACCTGTGGCATTAGTGCAGCTTCGTCTCACCCCGCATGAGGAAGATGC
GCGAGAGGTGTACCTTTTTCGACTGTCGGTACTAGTGGGAGAGGCCAACT
CGCGGCATCGTTCCAACATTTCCAGAGGCATCGGCGGCCTGCAAGATGCA
TTGACAGTCAGTGGAAACGGCAAGTATCTAAGTGGACACAGCTCTACGAA
TACGAGCATGGTGCCGATGAGCACCGGCAGGAGGAATTCTAGCTCACAGG
GGCCACAGCAAGGGCAATACGGTAGCAGCGGCGTGGTAGCAACGCGGAAC
AACGAAAATCAGGTCGTGCCGGCTGGCAGTGGGGCAGAGGGAGCAGTCGT
GGCTGATGCTCTGAACGACGTAATGGGAAAGATGTTGACGGTGGTGAGTA
GGAAAACGAAAGGGTACGTAGGGTCGACATACAAAAAAACAGAAGACAAG
ATATCAGCTCGGATGAAGTCCATAGAGGCGAAAATTTCTGGCTTCGAGGA
AGTAGTGGGTCAAAACTTGGAGCGAAGACTGCTAGATTTGGAGCACGTGA
TGGCCACATTGAACGAGAGGATCTCGCCCAAACTTTCTCCCCTTGCGCCG
GAAGGGAAAAAGCAAGGGCAGTCCCTGGCGGCCCCGGGAAAGCGAGATTC
GGACAGGTCCGACTCGGTCAATTGCGAGGGAGGAGTCGAAGAGAGCAAAG
ACGGACATGCACCGCAAATGAGCCGCAACCAGCAGCCTTGTGAACCTTAA
ACTGTGTAATTACGATAAATAGATCAGATTTGTCGAGCGCGCCGTTATGG
GGTGGAAGGGCACAAAGCGTGAAGCACATGCTTTCCGCGCCCCACATTGG
CAGTAGAAGTAAATCCGTTGACGCTTGCTATGATATCCGTACAATTCCCA
GCTGTCAGATTCATGGGTTTATCTATTTTGTGATTAAATACTTTGACTTG
TCTTTGTCTCCACTTATATCACTGCACACGCGTAAACTTTAAGGCAATGT
ATATTCGAGCTATCTCC

Coding sequence (CDS) from alignment at CM002459.1:391241..393207-

>rna2440 ID=rna2440|Name=rna2440|organism=Nannochloropsis gaditana|type=CDS|length=2172bp|location=Sequence derived from alignment at CM002459.1:391241..393207- (Nannochloropsis gaditana)
TGACGATGGAAAAGGATGCTCGCGTTTCGTACATGGAGATGGTAACCTCG
GCTAGGGAGGTAGAGATGTATGTCCTTAAGGGTGGCCACGGCGCCTCGGG
AGAGTACTCGAAGGTTGGCGGCCAAAGAGGCCGCCCCGCAGTGGACCACC
CCTATAAGTACCATTACAAATTCACTTCCTCAGACCTTCCCGATGTACCT
GTGGCATTAGTGCAGCTTCGTCTCACCCCGCATGAGGAAGATGCGCGAGA
GGTGTACCTTTTTCGACTGTCGGTACTAGTGGGAGAGGCCAACTCGCGGC
ATCGTTCCAACATTTCCAGAGGCATCGGCGGCCTGCAAGATGCATTGACA
GTCAGTGGAAACGGCAAGTATCTAAGTGGACACAGCTCTACGAATACGAG
CATGGTGCCGATGAGCACCGGCAGGAGGAATTCTAGCTCACAGGGGCCAC
AGCAAGGGCAATACGGTAGCAGCGGCGTGGTAGCAACGCGGAACAACGAA
AATCAGGTCGTGCCGGCTGGCAGTGGGGCAGAGGGAGCAGTCGTGGCTGA
TGCTCTGAACGACGTAATGGGAAAGATGTTGACGGTGGTGAGTAGGAAAA
CGAAAGGGTACGTAGGGTCGACATACAAAAAAACAGAAGACAAGATATCA
GCTCGGATGAAGTCCATAGAGGCGAAAATTTCTGGCTTCGAGGAAGTAGT
GGGTCAAAACTTGGAGCGAAGACTGCTAGATTTGGAGCACGTGATGGCCA
CATTGAACGAGAGGATCTCGCCCAAACTTTCTCCCCTTGCGCCGGAAGGG
AAAAAGCAAGGGCAGTCCCTGGCGGCCCCGGGAAAGCGAGATTCGGACAG
GTCCGACTCGGTCAATTGCGAGGGAGGAGTCGAAGAGAGCAAAGACGGAC
ATGCACCGCAAATGAGCCGCAACCAGCAGCCTTGTGAACCTTAAATGCCG
TACGTACGCTCGAATTGGGAGGGACTCACAAAATTTAATGGTGGCCATAA
ATTTGAAGTGGGCCATGTCCACTCCTTCAATGAGGTCAAACTTGCCCGCC
CCTTGCAAGCGGGACCAAAAGGCTGTTTCCTTCACGTGACGATGGAAAAG
GATGCTCGCGTTTCGTACATGGAGATGGTAACCTCGGCTAGGGAGGTAGA
GATGTATGTCCTTAAGGGTGGCCACGGCGCCTCGGGAGAGTACTCGAAGG
TTGGCGGCCAAAGAGGCCGCCCCGCAGTGGACCACCCCTATAAGTACCAT
TACAAATTCACTTCCTCAGACCTTCCCGATGTACCTGTGGCATTAGTGCA
GCTTCGTCTCACCCCGCATGAGGAAGATGCGCGAGAGGTGTACCTTTTTC
GACTGTCGGTACTAGTGGGAGAGGCCAACTCGCGGCATCGTTCCAACATT
TCCAGAGGCATCGGCGGCCTGCAAGATGCATTGACAGTCAGTGGAAACGG
CAAGTATCTAAGTGGACACAGCTCTACGAATACGAGCATGGTGCCGATGA
GCACCGGCAGGAGGAATTCTAGCTCACAGGGGCCACAGCAAGGGCAATAC
GGTAGCAGCGGCGTGGTAGCAACGCGGAACAACGAAAATCAGGTCGTGCC
GGCTGGCAGTGGGGCAGAGGGAGCAGTCGTGGCTGATGCTCTGAACGACG
TAATGGGAAAGATGTTGACGGTGGTGAGTAGGAAAACGAAAGGGTACGTA
GGGTCGACATACAAAAAAACAGAAGACAAGATATCAGCTCGGATGAAGTC
CATAGAGGCGAAAATTTCTGGCTTCGAGGAAGTAGTGGGTCAAAACTTGG
AGCGAAGACTGCTAGATTTGGAGCACGTGATGGCCACATTGAACGAGAGG
ATCTCGCCCAAACTTTCTCCCCTTGCGCCGGAAGGGAAAAAGCAAGGGCA
GTCCCTGGCGGCCCCGGGAAAGCGAGATTCGGACAGGTCCGACTCGGTCA
ATTGCGAGGGAGGAGTCGAAGAGAGCAAAGACGGACATGCACCGCAAATG
AGCCGCAACCAGCAGCCTTGTGAACCTTAAATGCCGTACGTACGCTCGAA
TTGGGAGGGACTCACAAAATTTAATGGTGGCCATAAATTTGAAGTGGGCC
ATGTCCACTCCTTCAATGAGGTCAAACTTGCCCGCCCCTTGCAAGCGGGA
CCAAAAGGCTGTTTCCTTCACG

Synonyms

Publications