rna2438, rna2438 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2438
Unique Name	rna2438
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1204
Alignment location	CM002459.1:387913..388881 -

Link to JBrowse

Properties


Property Name	Value
Product	nitroreductase-like protein
Orig transcript id	gnl\|cribi\|Naga_100004g73.9197.mrna
Orig protein id	gnl\|cribi\|Naga_100004g73.9197
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:387913..388881 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g73	gene2331	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28266.1	cds2430	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2438	rna2438-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:387913..388881-
coding sequence from alignment at CM002459.1:387913..388881-

mRNA sequence

>rna2438 ID=rna2438|Name=rna2438|organism=Nannochloropsis gaditana|type=mRNA|length=1204bp
TGAAAGGTCATCTGAGGGTGAAATCCCAGCAGCGGGGATGCAACATGACT
TACCGGACAATATTAACCTCCCCACTGCGTCCCTCCACGGCTTACTTCGA
CCACAACCTCAGCAACTTCTTACCATCTTCAATTTAAATAACTTGTCCAG
GCGCCCAACATCTCTTCATTTTAGCACCAATGTGTTCAGTGCACGTACTT
TTTAATTATTTTGAGTTTCAGATTCCATAAAACACGCGATCTAGACTTTC
TTGCCTTGGTATCTTACACGAGATTCTCGATCCCGATTGACGCAAACAGG
TCTCCAAGCCGACGATAATGTCAAGTAGTAACGCTCCTCAAATAAAAGTG
CCAATCGTGGATTATTGTCCACCTTCAACTTTTGGGACCGATATGAAGGT
GCTCAAGCATATGTGGTTTGCAAAAATTGTTCCTGGACAATCACAACAGG
ATCGGCTGGAGTCCTTCTACAAGGAGCAGGCGGACCTCTACGATTCCTAT
CGGTTCAGAATGTTGCACGGGCGGTTGCCTATGGTCAAGGCCATGCCTAT
TCCTCCGAAAGGCGAGGGGGTGTGGCTCGACGTCGGGGGAGGGACAGGCT
CGAACCTGGAATATTTCGCTGAGAATTTGAATCACTTTGCAAAGGTGATG
GTATTGGATTTGTGTCCTTCCCTGGCGGCCCAGGCACAGGAGCGCGTGGC
GCGACATGCGGGCTGGAGTGAATTTGTGAAGGTCATTGTCGCTGACGCCT
GCGACGCCGAGGCCCCGGGACTCCCCTCCCCCGGCTCCGTGGACCTCATC
ACCTTCTCCTACGCGCTCTCCATGATCCCAGACTGGGAAGCCGCCCTTCG
CAATGCCAAGCGGCTCTTGAAGAAAGGCGGGCACGTGTGTGTCTGTGATT
TCACCGTGGACAACAGCCAAGGATGGGGCATGCAAACATTTTGGGCGAAT
GTCTTCGCCTCGGACCACGTGTATCTCCGACCCGAGCGCCGGCCTTTTCT
GCGAGAGGAGTTCGTCTCGGTACACGAAGAGCTTGGCTTTGGGACCTTCC
CCTACGTGCCTCCTGTGCTGCAGGCGCCTTGGTATGTCTTTATAGGGAGG
AAAGAGTGAGCAGATCCATGTGTCTATGAGAGGGAATACGACGAAGCGAG
GGAGCCAAGCAGGGGAAAGGCCGAATAAAAAAATATCCATGTCAAGCTCA
GACA

protein sequence of rna2438

>rna2438-protein ID=rna2438-protein|Name=rna2438|organism=Nannochloropsis gaditana|type=polypeptide|length=322bp
MTFLPFHHLVTRRLGMYRSGGKGAWLFLPTSSSARSRPGRLRPFHAAFST
SAGAQHSEEENEDHESSLARAGISAFKRAVLARHSTKAFDAKREIADETL
AAILALTLRCPTSFNVQPYTVTIVQSEDTKQKLAACMLGPNSARVLQAPV
TAVFAADLDPVQLVPRVQSLERRKRGLPEAYLATLPFSVAFLAGKGHLAH
AFKDLFTTAMSPLQPMPSVSTLEAWSYKNTAIAASWYMLACSVHGLDTCP
MEGFDGRRIMHELHIPASRYAIPLVVSTGFAMPLPSSSPERNKEAKRSPR
FPPEAVVFKDQYGHAYKGISQL

mRNA from alignment at CM002459.1:387913..388881-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2438 ID=rna2438|Name=rna2438|organism=Nannochloropsis gaditana|type=mRNA|length=969bp|location=Sequence derived from alignment at CM002459.1:387913..388881- (Nannochloropsis gaditana)
ATGACATTTCTTCCGTTTCATCACCTAGTAACACGGCGCCTGGGGATGTA
CAGGAGTGGTGGTAAAGGCGCATGGCTTTTCTTGCCTACCTCGTCCTCGG
CAAGATCAAGGCCGGGACGTCTGCGGCCCTTTCACGCCGCCTTCAGCACG
AGTGCAGGCGCGCAACATTCAGAAGAGGAGAACGAGGACCATGAGAGCTC
TCTTGCAAGGGCTGGGATCAGTGCCTTCAAGAGAGCGGTGCTGGCCAGGC
ATTCCACCAAAGCCTTTGACGCCAAGCGCGAGATTGCGGACGAGACGTTG
GCTGCCATTTTGGCTTTGACCCTTCGATGCCCGACAAGCTTCAACGTGCA
GCCATACACTGTGACAATCGTCCAGTCTGAAGATACGAAGCAGAAACTGG
CAGCCTGTATGCTAGGGCCCAACAGTGCCCGTGTCCTCCAAGCACCCGTC
ACGGCCGTATTTGCTGCGGATCTGGATCCTGTCCAGCTTGTCCCTCGCGT
TCAGTCTTTGGAGAGAAGAAAGCGTGGGCTCCCAGAGGCTTATCTGGCCA
CCCTCCCCTTCAGCGTCGCATTCTTGGCTGGAAAGGGCCACTTGGCGCAC
GCCTTCAAGGACCTGTTCACCACCGCCATGTCGCCCTTGCAGCCTATGCC
CTCGGTCAGCACCCTGGAGGCCTGGTCCTACAAAAATACGGCGATCGCCG
CGTCCTGGTACATGCTCGCGTGCAGCGTGCACGGCCTGGACACCTGTCCC
ATGGAGGGCTTCGACGGTCGTCGCATCATGCACGAGCTCCACATCCCGGC
CTCGCGTTACGCCATTCCCCTGGTCGTCTCCACCGGCTTCGCGATGCCGC
TGCCGTCGAGCAGTCCGGAGCGGAATAAAGAGGCGAAAAGATCTCCGCGA
TTTCCACCAGAGGCGGTCGTCTTCAAGGACCAGTACGGGCACGCTTACAA
AGGAATATCTCAGCTGTGA

Coding sequence (CDS) from alignment at CM002459.1:387913..388881-

>rna2438 ID=rna2438|Name=rna2438|organism=Nannochloropsis gaditana|type=CDS|length=969bp|location=Sequence derived from alignment at CM002459.1:387913..388881- (Nannochloropsis gaditana)
ATGACATTTCTTCCGTTTCATCACCTAGTAACACGGCGCCTGGGGATGTA
CAGGAGTGGTGGTAAAGGCGCATGGCTTTTCTTGCCTACCTCGTCCTCGG
CAAGATCAAGGCCGGGACGTCTGCGGCCCTTTCACGCCGCCTTCAGCACG
AGTGCAGGCGCGCAACATTCAGAAGAGGAGAACGAGGACCATGAGAGCTC
TCTTGCAAGGGCTGGGATCAGTGCCTTCAAGAGAGCGGTGCTGGCCAGGC
ATTCCACCAAAGCCTTTGACGCCAAGCGCGAGATTGCGGACGAGACGTTG
GCTGCCATTTTGGCTTTGACCCTTCGATGCCCGACAAGCTTCAACGTGCA
GCCATACACTGTGACAATCGTCCAGTCTGAAGATACGAAGCAGAAACTGG
CAGCCTGTATGCTAGGGCCCAACAGTGCCCGTGTCCTCCAAGCACCCGTC
ACGGCCGTATTTGCTGCGGATCTGGATCCTGTCCAGCTTGTCCCTCGCGT
TCAGTCTTTGGAGAGAAGAAAGCGTGGGCTCCCAGAGGCTTATCTGGCCA
CCCTCCCCTTCAGCGTCGCATTCTTGGCTGGAAAGGGCCACTTGGCGCAC
GCCTTCAAGGACCTGTTCACCACCGCCATGTCGCCCTTGCAGCCTATGCC
CTCGGTCAGCACCCTGGAGGCCTGGTCCTACAAAAATACGGCGATCGCCG
CGTCCTGGTACATGCTCGCGTGCAGCGTGCACGGCCTGGACACCTGTCCC
ATGGAGGGCTTCGACGGTCGTCGCATCATGCACGAGCTCCACATCCCGGC
CTCGCGTTACGCCATTCCCCTGGTCGTCTCCACCGGCTTCGCGATGCCGC
TGCCGTCGAGCAGTCCGGAGCGGAATAAAGAGGCGAAAAGATCTCCGCGA
TTTCCACCAGAGGCGGTCGTCTTCAAGGACCAGTACGGGCACGCTTACAA
AGGAATATCTCAGCTGTGA

Synonyms

Publications