rna2437, rna2437 (mRNA) Nannochloropsis gaditana

Overview
Namerna2437
Unique Namerna2437
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1113
Alignment locationCM002459.1:386299..387818 +

Link to JBrowse

Properties
Property NameValue
Productputative ubiquinone menaquinone biosynthesis methyltransferase
Orig transcript idgnl|cribi|Naga_100004g72.9207.mrna
Orig protein idgnl|cribi|Naga_100004g72.9207
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:386299..387818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g72gene2330Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2437rna2437-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28276.1cds2429Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2437 ID=rna2437|Name=rna2437|organism=Nannochloropsis gaditana|type=mRNA|length=1113bp
ATGGCCTACTTTTCCTCGCGTTCAGGGAAGCCTCAAAAAGGGGCACAGGA
AGTGGCTGCCGCCCCGACACCTTCTCCTCCTCGTCGTCGTTTCATCATTG
ACTGCGACCCCGGTGTCGATGACGCAATCGCCATCCTTATGGCAGTCAGT
GAAGCAGCTCGTTTGGATGAGCAAATCCTGGCAGTGACGACGGTTCATGG
GAACGTGCCTTTAGAGCTGACTACCAAGAACGCGATGAAAGTCCTCGACG
TCTTGCCAGTCCAAACGCCACATTTCGATTCTCGCCGCATCCCGATATTT
CGTGGTTGCGCTTCGCCTCTCATTCATAGCGCTCATGAATATTTCCCGTG
GCACGGGCTCGATGGCCTTGGTGATGCAGGTCTTCAGGACGCTGAATCTC
GTCACGTGGAATCTGAACATGCAGCACTGGCCATGATTCGCTTGTGTAAG
CAGTACGCAGGTGAAGTGACCTTGGTATGCCTTGGTCCTTTAACAAGCGT
CGCGCTGGCTTGCAAGCTCGACCCCACCTTTCCTGCCTCAGTGCGCCAGA
TGATAGTGATGGGCGGTACGACTCGTGCCAAGGGTAACGTCAGTCTGACA
TCGGAGTTCAACTTTCATAAAGATCCGGAGGCAGCTCACATTGTGCTCTC
ATCTTTTCCGCAAAGCTACATGGTATCGTGGGAGACCACTGAACAGCACA
CCGTCGCGTGGGAGTTCATGGAAGAACTTTTGAAACAAGCGGAGGTCTCC
TGTTCCAGCCTTGGCACCTTTTTGCGCGGCATCACGCGACCATTTCTGCG
TGAGAAAGACCGGTGGAGAGGTGCATTGATCTGTGACGCTGTAGCCATGG
CAGTTGCAATCGACCCAGAAGTCGTGATGAGCGTCACTGAGTGCTTTGTG
GACGTTGAATTGCACGGGAGGTACGGGCGGGGACAGACTGTAATTGATTG
GGAAGGGCAATTAAAAGGAAAGACAGAGGTAGGGGCTGCAAATGTCAAGA
TTGTTGAGAAAATTAACATGGATCGAATGCACGAAATGCTTCTTGGCATC
GTAAAAACGGCCACAGCACTTGCCAAGGATCCATCTAACGTAAAGGAACG
CGTTCAGGAATAA
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protein sequence of rna2437

>rna2437-protein ID=rna2437-protein|Name=rna2437|organism=Nannochloropsis gaditana|type=polypeptide|length=263bp
MSSSNAPQIKVPIVDYCPPSTFGTDMKVLKHMWFAKIVPGQSQQDRLESF
YKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYF
AENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAP
GLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNS
QGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPV
LQAPWYVFIGRKE
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mRNA from alignment at CM002459.1:386299..387818+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2437 ID=rna2437|Name=rna2437|organism=Nannochloropsis gaditana|type=mRNA|length=1520bp|location=Sequence derived from alignment at CM002459.1:386299..387818+ (Nannochloropsis gaditana)
TGAAAGGTCATCTGAGGGTGAAATCCCAGCAGCGGGGATGCAACATGACT
TACCGGACAAtattaacctccccactgcGTCCCTCCACGGCTTACTTCGA
CCACAACCTCAGCAACTTCTTACCATCTTCAATTTAAATAACTTGTCCAG
GCGCCCAACATCTCTTCATTTTAGCACCAATGTGTTCAGTGCACGTACTT
TTTAATTATTTTGAGTTTCAGATTCCATAAAACACGCGATCTAGACTTTC
TTGCCTTGGTATCTTACACGAGATTCTCGATCCCGATTGACGCAAACAGG
TCTCCAAGCCGACGATAATGTCAAGTAGTAACGCTCCTCAAATAAAAGTG
CCAATCGTGGATTATTGTCCACCTTCAACTTTTGGGACCGATATGAAGGT
GCTCAAGCATATGTGGTTTGCAAAAATTGTTCCTGGACAATCACAACAGG
ATCGGGTAGGTCGAAGTCGTGGAAGTaaggtgatgatgatgatgtgTAAG
CATGACTATTGAAgcatatgtatatatatagatCCTGGTTGGTGCACCTA
AACTCGTGTCTCAATTAAATTTCCCTGGAACTTGAAGCTGGAGTCCTTCT
acaaggagcaggcggacCTCTACGATTCCTATCGGTTCAGAATGTTGCAC
GGGCGGTTGCCTATGGTCAAGGCCATGCCTATTCCTccgaaaggcgaggg
ggtgTGGCTCGacgtcgggggagggacaggctCGAACCTGGAATATTTCG
CTGAGAATTTGAATCACTTTGCAAAGGTGATGGTATTGGATTTGTGTCCT
TCCCTGGCGGCCCAGGCACAGGAGCGCGTGGCGCGACATGCGGGCTGGAG
TGAATTTGTGAAGGTGAGTGTCGCATGCCTTAGCGTGACCAGTCgatagg
agaggaggatgagattCCACTGTACGAAGAAAGGGGGCTTCGTACCCTGC
TTGTCGAGACGTGCGGGCAAACTTGCCTTGTTTTCTCGCTGATCTAGTtg
gtcttctttttcctaaCACACGCCTGTGCTTGAACACTGGTTTGCAGGTC
ATTGTCGCTGACGCCTGCGACGCCGAGGCCCCGggactcccctcccccgg
ctccGTGGACctcatcaccttctcctACGCGCTCTCCATGATCCCAGACT
GGGAAGCCGCCCTTCGCAATGCCAAGCGGCTCTTGAAGAAAGGCGGGCAC
GTGTGTGTCTGTGATTTCACCGTGGACAACAGCCAAGGATGGGGCATGCA
AACATTTTGGGCGAATGTCTTCGCCTCGGACCACGTGTATCTCCGACCCG
AGCGCCGGCCTTTTCTGCGAGAGGAGTTCGTCTCGGTACACGAAGAGCTT
GGCTTTGGGACCTTCCCCTACGTGCCTCCTGTGCTGCAGGCGCCTTGGTA
TGTCTTTatagggaggaaagagtgagCAGATCCATGTGTCTATGAGAGGG
AATACGACGAAGCGAGGGAGCCAAGCAGGGGAAAGGCCGAATAAAAAAAT
ATCCATGTCAAGCTCAGACA
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Coding sequence (CDS) from alignment at CM002459.1:386299..387818+

>rna2437 ID=rna2437|Name=rna2437|organism=Nannochloropsis gaditana|type=CDS|length=2376bp|location=Sequence derived from alignment at CM002459.1:386299..387818+ (Nannochloropsis gaditana)
ATGTCAAGTAGTAACGCTCCTCAAATAAAAGTGCCAATCGTGGATTATTG
TCCACCTTCAACTTTTGGGACCGATATGAAGGTGCTCAAGCATATGTGGT
TTGCAAAAATTGTTCCTGGACAATCACAACAGGATCGGCTGGAGTCCTTC
TacaaggagcaggcggacCTCTACGATTCCTATCGGTTCAGAATGTTGCA
CGGGCGGTTGCCTATGGTCAAGGCCATGCCTATTCCTccgaaaggcgagg
gggtgTGGCTCGacgtcgggggagggacaggctCGAACCTGGAATATTTC
GCTGAGAATTTGAATCACTTTGCAAAGGTGATGGTATTGGATTTGTGTCC
TTCCCTGGCGGCCCAGGCACAGGAGCGCGTGGCGCGACATGCGGGCTGGA
GTGAATTTGTGAAGGTCATTGTCGCTGACGCCTGCGACGCCGAGGCCCCG
ggactcccctcccccggctccGTGGACctcatcaccttctcctACGCGCT
CTCCATGATCCCAGACTGGGAAGCCGCCCTTCGCAATGCCAAGCGGCTCT
TGAAGAAAGGCGGGCACGTGTGTGTCTGTGATTTCACCGTGGACAACAGC
CAAGGATGGGGCATGCAAACATTTTGGGCGAATGTCTTCGCCTCGGACCA
CGTGTATCTCCGACCCGAGCGCCGGCCTTTTCTGCGAGAGGAGTTCGTCT
CGGTACACGAAGAGCTTGGCTTTGGGACCTTCCCCTACGTGCCTCCTGTG
CTGCAGGCGCCTTGGTATGTCTTTatagggaggaaagagtgaATGTCAAG
TAGTAACGCTCCTCAAATAAAAGTGCCAATCGTGGATTATTGTCCACCTT
CAACTTTTGGGACCGATATGAAGGTGCTCAAGCATATGTGGTTTGCAAAA
ATTGTTCCTGGACAATCACAACAGGATCGGCTGGAGTCCTTCTacaagga
gcaggcggacCTCTACGATTCCTATCGGTTCAGAATGTTGCACGGGCGGT
TGCCTATGGTCAAGGCCATGCCTATTCCTccgaaaggcgagggggtgTGG
CTCGacgtcgggggagggacaggctCGAACCTGGAATATTTCGCTGAGAA
TTTGAATCACTTTGCAAAGGTGATGGTATTGGATTTGTGTCCTTCCCTGG
CGGCCCAGGCACAGGAGCGCGTGGCGCGACATGCGGGCTGGAGTGAATTT
GTGAAGGTCATTGTCGCTGACGCCTGCGACGCCGAGGCCCCGggactccc
ctcccccggctccGTGGACctcatcaccttctcctACGCGCTCTCCATGA
TCCCAGACTGGGAAGCCGCCCTTCGCAATGCCAAGCGGCTCTTGAAGAAA
GGCGGGCACGTGTGTGTCTGTGATTTCACCGTGGACAACAGCCAAGGATG
GGGCATGCAAACATTTTGGGCGAATGTCTTCGCCTCGGACCACGTGTATC
TCCGACCCGAGCGCCGGCCTTTTCTGCGAGAGGAGTTCGTCTCGGTACAC
GAAGAGCTTGGCTTTGGGACCTTCCCCTACGTGCCTCCTGTGCTGCAGGC
GCCTTGGTATGTCTTTatagggaggaaagagtgaATGTCAAGTAGTAACG
CTCCTCAAATAAAAGTGCCAATCGTGGATTATTGTCCACCTTCAACTTTT
GGGACCGATATGAAGGTGCTCAAGCATATGTGGTTTGCAAAAATTGTTCC
TGGACAATCACAACAGGATCGGCTGGAGTCCTTCTacaaggagcaggcgg
acCTCTACGATTCCTATCGGTTCAGAATGTTGCACGGGCGGTTGCCTATG
GTCAAGGCCATGCCTATTCCTccgaaaggcgagggggtgTGGCTCGacgt
cgggggagggacaggctCGAACCTGGAATATTTCGCTGAGAATTTGAATC
ACTTTGCAAAGGTGATGGTATTGGATTTGTGTCCTTCCCTGGCGGCCCAG
GCACAGGAGCGCGTGGCGCGACATGCGGGCTGGAGTGAATTTGTGAAGGT
CATTGTCGCTGACGCCTGCGACGCCGAGGCCCCGggactcccctcccccg
gctccGTGGACctcatcaccttctcctACGCGCTCTCCATGATCCCAGAC
TGGGAAGCCGCCCTTCGCAATGCCAAGCGGCTCTTGAAGAAAGGCGGGCA
CGTGTGTGTCTGTGATTTCACCGTGGACAACAGCCAAGGATGGGGCATGC
AAACATTTTGGGCGAATGTCTTCGCCTCGGACCACGTGTATCTCCGACCC
GAGCGCCGGCCTTTTCTGCGAGAGGAGTTCGTCTCGGTACACGAAGAGCT
TGGCTTTGGGACCTTCCCCTACGTGCCTCCTGTGCTGCAGGCGCCTTGGT
ATGTCTTTatagggaggaaagagtga
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Synonyms
Publications