EWM28276.1, cds2429 (CDS) Nannochloropsis gaditana

Overview
NameEWM28276.1
Unique Namecds2429
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:386616..386753 +
Alignment locationCM002459.1:386886..387161 +
Alignment locationCM002459.1:387346..387723 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28276.1
Productputative ubiquinone menaquinone biosynthesis methyltransferase
Orig transcript idgnl|cribi|Naga_100004g72.9207.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:386616..386753 +
CM002459.1supercontigCM002459.1:386886..387161 +
CM002459.1supercontigCM002459.1:387346..387723 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|585110621|gb|EWM28276.1| (putative ubiquinone menaquinone biosynthesis methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MSSSNAPQIKVPIVDYCPPSTFGTDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNSQGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRKE 263
            MSSSNAPQIKVPIVDYCPPSTFGTDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNSQGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRKE
Sbjct:    1 MSSSNAPQIKVPIVDYCPPSTFGTDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNSQGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRKE 263          
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|551653347|ref|XP_005829451.1| (hypothetical protein GUITHDRAFT_111444 [Guillardia theta CCMP2712] >gi|428173570|gb|EKX42471.1| hypothetical protein GUITHDRAFT_111444 [Guillardia theta CCMP2712])

HSP 1 Score: 241.506 bits (615), Expect = 1.585e-75
Identity = 126/258 (48.84%), Postives = 168/258 (65.12%), Query Frame = 0
Query:    9 IKVPIVDYCPPSTFGTDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNH--FAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNSQG-WGM-QTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRK 262
            + +P  ++   + F  DM+VLK MWF+KI  G + QD LESFY  QA LYD YR RMLH R PM+K + I      VW+D+GGGTGS++EY +  L+   F+ V+VLDLCPSL   A+ER  +   W   VK ++ DAC+    GLP  GS DL+TFSY+L MIPDW+ A+ NA RLL+ GG +CVCDFTV   +G W + Q  W  +FA DHV+L  E   +L+       E+ GFG+FPYV P+L+A WY ++G+K
Sbjct:   67 VCLPFSEFNVQNNFSEDMQVLKSMWFSKI-SGSAHQDILESFYSPQAKLYDGYRSRMLHARPPMMKNLSI------VWVDLGGGTGSSVEYMSNALDEGWFSSVVVLDLCPSLHKIAEERAKK---WPGIVKAVLGDACNQNEEGLPPAGSCDLVTFSYSLVMIPDWKGAIANALRLLRPGGRLCVCDFTVLPQKGQWTVTQEMWKRIFARDHVHLSDEHLKYLKSVTEPEKEDCGFGSFPYV-PLLKAGWYWYVGKK 313          
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|1099564715|emb|SFH83924.1| (S-adenosylmethionine-diacylgycerolhomoserine-N-methlytransferase [Planctomicrobium piriforme])

HSP 1 Score: 188.734 bits (478), Expect = 7.873e-56
Identity = 104/248 (41.94%), Postives = 146/248 (58.87%), Query Frame = 0
Query:   24 TDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTV--------DNSQGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRKE 263
             D+K L H+  A+   G + Q+RLESFY  QA+ YD +R RMLH R  M++++P+P  G  VW+D+G GTG N E+    +N  +K+ ++DL  SL  QAQ RV +  GW   V V     C      +P  GSVD++TFSY+L+MIPDW  A+ +A  LLK GG + + DF V            GW  +TFW   F SD+V+L P+  P+L+ +F +V      G  PY+ P ++AP YVFIG+K 
Sbjct:    6 NDLKTLWHL-VARRASGSTHQERLESFYSGQANGYDDFRRRMLHSRQEMIQSVPVPQGG--VWVDLGAGTGENAEHLGPRINDLSKMYLVDLSTSLLEQAQARV-QARGWQNVVPV-----CHDATTFVPPEGSVDVVTFSYSLTMIPDWFRAMDHAYSLLKPGGSIGIVDFFVARKYPGDGHTPHGWSTRTFWPPWFGSDNVFLSPDHIPYLKNKFETVMLSERRGKIPYL-PFVRAPHYVFIGKKR 243          
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|494551698|ref|WP_007331853.1| (class I SAM-dependent methyltransferase [Rhodopirellula baltica] >gi|408498171|gb|EKK02675.1| protein containing Methyltransferase type 11 domain protein [Rhodopirellula baltica SH28])

HSP 1 Score: 179.104 bits (453), Expect = 4.921e-52
Identity = 107/253 (42.29%), Postives = 148/253 (58.50%), Query Frame = 0
Query:   18 PPSTFGTDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTV--------DNSQGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRK 262
            P S FG D+KVL H+ F + V G +  +RLESFY+ QA  YDS+R R+LHGR  ++  +  P  G  VW+D G GTG NL    E     A+V ++DL PSL   A ER+      +  V +  ADA   E P      SVD++TFSY+L+MIPDW  ++  A+R+LK GG + V DF V            GW  +TFW+  FASD+VYL  +    LR +F +   E   G+ PY+ P+++AP+Y+F+GRK
Sbjct:    7 PTSRFG-DLKVLWHLLF-RPVRGNTHGERLESFYEGQASHYDSFRARLLHGRSELMSCVDFPDNG--VWVDFGAGTGHNLFSIEERSKSLAEVHLVDLSPSLLQIASERIEERQLSN--VTLHHADATQFELP----ENSVDVVTFSYSLTMIPDWFESVLIARRILKPGGMIAVTDFHVSRKHAAAPSRQHGWLRRTFWSLWFASDNVYLSSDHLAMLRRQFKTERCEERLGSVPYM-PLVKAPYYLFLGRK 248          
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|1015453683|gb|AMV35466.1| (Demethylmenaquinone methyltransferase [Pirellula sp. SH-Sr6A])

HSP 1 Score: 178.333 bits (451), Expect = 6.748e-52
Identity = 98/250 (39.20%), Postives = 152/250 (60.80%), Query Frame = 0
Query:   21 TFGTDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDN--------SQGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRK 262
            + G D+K+L H+   + V G++  +R+ESFY  QA+ YD +R R+L GR  + + + +     GVW+D+GGGTGSNLE+  + +  F KV V+DL  SL    ++R  ++ GWS  V+ +V DA       LP  G+ D++TFSY+L+MIPDW AA+ NA R+LK GG + V DF V             WG ++FW   FA+D+V+  P+  P+L++ F ++  +      PY+ P+++ P+Y F+GRK
Sbjct:    2 SLGNDLKILYHL-VLRPVRGKTHSERMESFYAGQAEGYDDFRKRLLQGREDVYREV-VDRSAGGVWVDMGGGTGSNLEFAGDGIRRFEKVYVVDLAESLLGIVKKRSEKN-GWSN-VEAVVGDATQW----LPPEGAADVVTFSYSLTMIPDWFAAIDNALRMLKPGGLIGVIDFYVARKHPADSLAKHRWGTRSFWPVWFANDNVFPSPDHLPYLQKHFETLRLKESRAKVPYL-PLVRTPYYQFVGRK 242          
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|575409369|gb|ETW95716.1| (SAM-dependent methlyltransferase [Candidatus Entotheonella sp. TSY1])

HSP 1 Score: 177.948 bits (450), Expect = 1.094e-51
Identity = 103/247 (41.70%), Postives = 145/247 (58.70%), Query Frame = 0
Query:   24 TDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNS--------QGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRK 262
            +++K+L HM  + I  G S  +RLESFY+ QA  YD++R R+LHGR  +  A+P+P  G  +WLD+GGGTG NL Y    ++  A + V+DL PSL A AQ+R+  HAGW   V  + AD        +P    VD++TFSY+L+MIPDW AA+  A +LL+ GG V V DF V             W  +TFW   F +D+V+  P+  P+L + F +       GT PY+P V   P+Y++IG K
Sbjct:    7 SELKILYHMLLSPIR-GHSHAERLESFYQGQATGYDAFRSRLLHGRQDLWGALPVPEGG--IWLDMGGGTGWNLTYLGAAIDRLAHLYVVDLSPSLLAMAQQRI-EHAGWRN-VTPVEADVTQFTPEHMP----VDVVTFSYSLTMIPDWFAAIDQAWKLLRPGGTVGVVDFYVSRKYPATYAKRHRWLTRTFWPVWFNNDNVFPSPDHVPYLHDRFEADMFSERAGTMPYMPGV-SVPYYLYIGHK 243          
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|488732040|ref|WP_002655451.1| (SAM-dependent methyltransferase [Blastopirellula marina] >gi|87290694|gb|EAQ82581.1| probable ubiquinone/menaquinone biosynthesis methyltransferase [Blastopirellula marina DSM 3645])

HSP 1 Score: 177.178 bits (448), Expect = 2.181e-51
Identity = 101/249 (40.56%), Postives = 144/249 (57.83%), Query Frame = 0
Query:   22 FGTDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVD--------NSQGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRK 262
              +D+KVL H+   K V G++  +RLESFY  QA+ YD +R R+L GR  M  ++ +P  G  VW+D+GGGTGSNLEY  +++     V V+DL  SL     ER+ +  GW    K + ADA        P  G  D++TFSY+L+MIPDW AA+ NA R+LK GG + V DF V            GW  + FW   F+SD+V+   +  P+L+ +F +V  E      PY+ P+++ P+Y F+GRK
Sbjct:    3 IASDLKVLYHL-AVKPVRGENHAERLESFYGGQAEAYDDFRKRLLQGRQEMYASLDLPEGG--VWVDMGGGTGSNLEYRGDDIPKMKSVYVVDLASSLLKVCDERI-QARGWETSAKTVEADATKF----TPEEGLADVVTFSYSLTMIPDWFAAMDNALRILKPGGLIGVVDFYVSRKYPHEGRTQHGWFNRNFWPVWFSSDNVHPSADHLPYLQRQFETVTLEERRAKVPYL-PLVRTPYYYFVGRK 242          
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|494569406|ref|WP_007338907.1| (class I SAM-dependent methyltransferase [Rhodopirellula baltica] >gi|436438407|gb|ELP31957.1| protein containing Methyltransferase type 11 domain protein [Rhodopirellula baltica SWK14])

HSP 1 Score: 175.252 bits (443), Expect = 1.581e-50
Identity = 104/256 (40.62%), Postives = 147/256 (57.42%), Query Frame = 0
Query:   15 DYCPPSTFGTDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNS--------QGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRK 262
            +   P++   D+KVL H+ F + V G +  +RLESFY+ QA  YDS+R R+LHGR  ++  +  P    GVW+D G GTG NL    E     A+V ++DL PSL   A ER+         V +  ADA   E P      SVD++TFSY+L+MIPDW  ++  A+R+LK GG + V DF V            GW  +TFW+  FASD+VYL  +    LR +F +   E   G+ PY+ P+++AP+Y+F+GRK
Sbjct:    3 EVIKPTSRFDDLKVLWHLLF-RPVRGNTHGERLESFYEGQASHYDSFRARLLHGRSELMSWVDFP--DNGVWVDFGAGTGHNLFSIEERSKSLAEVHLVDLSPSLLQIASERIEERQ--LSNVTLHHADATQFELPD----NSVDVVTFSYSLTMIPDWFESVLIARRILKPGGVIAVTDFHVSRKHAAAPSRQHGWLRRTFWSLWFASDNVYLSSDHLAMLRRQFKTERCEERLGSVPYM-PLVKAPYYLFLGRK 248          
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|1094113836|ref|WP_071103335.1| (class I SAM-dependent methyltransferase [Moorea producens] >gi|1092221544|gb|AOY79886.1| SAM-dependent methyltransferase [Moorea producens JHB])

HSP 1 Score: 174.096 bits (440), Expect = 3.973e-50
Identity = 99/248 (39.92%), Postives = 147/248 (59.27%), Query Frame = 0
Query:   24 TDMKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNS---QGWGMQT-----FWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRKE 263
            +D+K + H+  AK + G S Q+RLE+FY+ Q+  YD +R R+L GR  + +++        VW+D GGGTGSNLE  A+ L+ F+K+ ++DL PSL   A+ R+A   GW+  V  + AD        LP  G  D++TFSY+L+MIP+W AA+  A+++LK GG + V DF V +    Q W   +     FW   FA+D+V+L P R  +L  +F +V      G  P++P  L+ P+Y FIGRK 
Sbjct:    9 SDLKTVYHL--AKPIRGDSHQERLENFYRTQSTDYDRFRRRLLKGREELYQSLADGDSNGSVWVDFGGGTGSNLESIADRLSKFSKIYIVDLSPSLLEVARGRIADR-GWTN-VTTVEADITQF----LPPEGVADIVTFSYSLTMIPEWFAAIEQAEQILKPGGIIGVVDFYVSHKHPPQDWQRHSFLARHFWPIWFATDNVFLCPNRLGYLHHKFDTVSLTEKMGNLPFLPG-LKVPYYRFIGRKR 247          
BLAST of EWM28276.1 vs. NCBI_GenBank
Match: gi|502877268|ref|WP_013112244.1| (SAM-dependent methyltransferase [Planctopirus limnophila] >gi|296016574|gb|ADG69813.1| Methyltransferase type 11 [Planctopirus limnophila DSM 3776])

HSP 1 Score: 173.326 bits (438), Expect = 6.859e-50
Identity = 101/245 (41.22%), Postives = 140/245 (57.14%), Query Frame = 0
Query:   26 MKVLKHMWFAKIVPGQSQQDRLESFYKEQADLYDSYRFRMLHGRLPMVKAMPIPPKGEGVWLDVGGGTGSNLEYFAENLNHFAKVMVLDLCPSLAAQAQERVARHAGWSEFVKVIVADACDAEAPGLPSPGSVDLITFSYALSMIPDWEAALRNAKRLLKKGGHVCVCDFTVDNS--------QGWGMQTFWANVFASDHVYLRPERRPFLREEFVSVHEELGFGTFPYVPPVLQAPWYVFIGRK 262
            MK+L HM   +   GQ+ ++RLE FYK QA  YDS+R R+LHG+  +   +P PP   GVW+D+G GTG N E + E L  F+ V ++DL  SL   AQ R+ +  GW   VK I  DA       LP  G+ D++TFSY+L+MIPDW  A+  A R+LK GG + + DF V             W  + FW   FA+D+V+L  +  P+L+    +V      G  PY+P V +AP YV++GRK
Sbjct:    1 MKILWHM-IVRQGRGQTHEERLEDFYKGQASGYDSFRKRLLHGKKDLFDQLPAPPG--GVWVDLGAGTGENAENWGERLQEFSNVYLVDLSSSLLKVAQARIEQR-GWQN-VKAIHHDATTF----LPPEGTADVVTFSYSLTMIPDWHKAVDQAIRMLKPGGVLGIVDFYVSRKYPPEGNVRHAWSTRHFWQIWFATDNVFLSGDHLPYLQSHLETVVLSERRGKVPYMPFV-RAPHYVYVGRK 235          
The following BLAST results are available for this feature:
BLAST of EWM28276.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110621|gb|EWM28276.1|0.000e+0100.00putative ubiquinone menaquinone biosynthesis methy... [more]
gi|551653347|ref|XP_005829451.1|1.585e-7548.84hypothetical protein GUITHDRAFT_111444 [Guillardia... [more]
gi|1099564715|emb|SFH83924.1|7.873e-5641.94S-adenosylmethionine-diacylgycerolhomoserine-N-met... [more]
gi|494551698|ref|WP_007331853.1|4.921e-5242.29class I SAM-dependent methyltransferase [Rhodopire... [more]
gi|1015453683|gb|AMV35466.1|6.748e-5239.20Demethylmenaquinone methyltransferase [Pirellula s... [more]
gi|575409369|gb|ETW95716.1|1.094e-5141.70SAM-dependent methlyltransferase [Candidatus Entot... [more]
gi|488732040|ref|WP_002655451.1|2.181e-5140.56SAM-dependent methyltransferase [Blastopirellula m... [more]
gi|494569406|ref|WP_007338907.1|1.581e-5040.63class I SAM-dependent methyltransferase [Rhodopire... [more]
gi|1094113836|ref|WP_071103335.1|3.973e-5039.92class I SAM-dependent methyltransferase [Moorea pr... [more]
gi|502877268|ref|WP_013112244.1|6.859e-5041.22SAM-dependent methyltransferase [Planctopirus limn... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2437rna2437Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications