rna2427, rna2427 (mRNA) Nannochloropsis gaditana

Overview
Namerna2427
Unique Namerna2427
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1023
Alignment locationCM002459.1:360219..360551 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g61.9117.mrna
Orig protein idgnl|cribi|Naga_100004g61.9117
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:360219..360551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g61gene2320Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2427rna2427-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28186.1cds2419Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2427 ID=rna2427|Name=rna2427|organism=Nannochloropsis gaditana|type=mRNA|length=1023bp
TTTCGCGTCACGTGATTGGGCGAATGTTTGTTTCTTCTTACAACACTGCA
CCCTTATTATTTCCTTTTCCTCACAGTCCCGCTCTGACCTGGATCTGGCC
AATGGGAGGGAGTGAGCAGACGGCCATGCTCCCTCACCGGCGGCGCCTGG
TGGACTTCTCCCGGTTACTCAAGGCGACGGAGCGCATACATAAAGCATCT
CTGGGCTTGAGTCCTGGACAGAGGGCATACCTATTGGAATTGAATCGCCT
GAATGCGTTCCTGCGGGCCTTGCGGGAGCAACTTGTCGAATTGCACAACC
TCGATTTGGGCGTGGTAGTGGCCCCGAAGACATTGCAAGAATTCAGCTTT
CGTGTGGACGGATTGGAACGCTCTCTGATGGATCGGCAGCAGGAGTTGCG
ACGATTCCATGCCTCGGGCGCTCTGAATGGCAGCAAGGACAATCCGAGTA
TGAGCACGAAGCCCTCTGCAGTTACTGGTCCCGATATCACCTCTGGAACA
GTCCAAGGCACTCGGACGACCCCGTGTCGCGAAAGTCGGGGGGGTAATTT
CTTGTCCGGGCAGGCCGGAAAATCGAAAAAAGGGAAGGGAAGAGGCGACA
GGGTCGACGGGGGCGATGAGGACAAGGTGACCAAAGAGAAGGAGGCGCAG
CAGGTTTTAACCGAGCAATTGGAGGAGCTGGTGGGTGCTTTGAAGGCTAG
TTCGATGCTGGTACATACAAGTCTGCGGGCGCAGAACAAGGTGCTGGATA
AGACGGAAGATGCGGCGCAGCGGAATTTGGACTCGTTACAGGTGGAGCTG
AAGAAAACTGAGGAGCAACTGAAGAGGAATTGGAGCAATTCCCTGACATC
TTGTTTTATGATTGCTATCATACTTTCCATTTTCATGGGCACCCTCTTAT
TTATGCGGTTCTTCCCAAAGAGGAGGTGGATATTGTGGTAGCATACTACG
GTCAAGAGGAAGGGAGTGGCCACGTAAAAATACCGGAAATATTGCTGATA
AAAAGTACTATGCAATTGATTTA
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protein sequence of rna2427

>rna2427-protein ID=rna2427-protein|Name=rna2427|organism=Nannochloropsis gaditana|type=polypeptide|length=92bp
MGMNSGVYRFLSKSFPLFVPLARTCDMGPSGKNYRGLTTSSVSRENHISS
YRMARLDARMNLQSLFKGENYVCDYHEEGEINRRKRSRNRHE
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mRNA from alignment at CM002459.1:360219..360551+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2427 ID=rna2427|Name=rna2427|organism=Nannochloropsis gaditana|type=mRNA|length=333bp|location=Sequence derived from alignment at CM002459.1:360219..360551+ (Nannochloropsis gaditana)
ATGGGCATGGTGAGGTTGCCTCTGCCGACAAACAGGTGAACTTTGATACA
TTTTCAAATCAAGAATTCGGGCGTCTATCGATTTCTAAGCAAGTCCTTTC
CGCTTTTTGTGCCGCTCGCTCGAACGTGTGACATGGGACCGAGCGGGAAG
AACTACAGGGGCCTCACCACCTCAAGCGTCTCGCGTGAGAATCACATTTC
TTCGTATCGAATGGCACGTCTCGACGCACGAATGAATTTGCAAAGTCTTT
TTAAAGGAGAAAATTATGTGTGCGACTATCATGAAGAAGGTGAAATCAAC
AGAAGAAAAAGATCCCGAAATAGACATGAGTAA
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Coding sequence (CDS) from alignment at CM002459.1:360219..360551+

>rna2427 ID=rna2427|Name=rna2427|organism=Nannochloropsis gaditana|type=CDS|length=558bp|location=Sequence derived from alignment at CM002459.1:360219..360551+ (Nannochloropsis gaditana)
ATGGGCATGAATTCGGGCGTCTATCGATTTCTAAGCAAGTCCTTTCCGCT
TTTTGTGCCGCTCGCTCGAACGTGTGACATGGGACCGAGCGGGAAGAACT
ACAGGGGCCTCACCACCTCAAGCGTCTCGCGTGAGAATCACATTTCTTCG
TATCGAATGGCACGTCTCGACGCACGAATGAATTTGCAAAGTCTTTTTAA
AGGAGAAAATTATGTGTGCGACTATCATGAAGAAGGTGAAATCAACAGAA
GAAAAAGATCCCGAAATAGACATGAGTAAATGGGCATGAATTCGGGCGTC
TATCGATTTCTAAGCAAGTCCTTTCCGCTTTTTGTGCCGCTCGCTCGAAC
GTGTGACATGGGACCGAGCGGGAAGAACTACAGGGGCCTCACCACCTCAA
GCGTCTCGCGTGAGAATCACATTTCTTCGTATCGAATGGCACGTCTCGAC
GCACGAATGAATTTGCAAAGTCTTTTTAAAGGAGAAAATTATGTGTGCGA
CTATCATGAAGAAGGTGAAATCAACAGAAGAAAAAGATCCCGAAATAGAC
ATGAGTAA
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Synonyms
Publications