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Properties
| Property Name | Value |
|---|
| Product | Vesicle transport protein, Use1 |
| Orig transcript id | gnl|cribi|Naga_100004g60.9217.mrna |
| Orig protein id | gnl|cribi|Naga_100004g60.9217 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:358899..360137 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2426 ID=rna2426|Name=rna2426|organism=Nannochloropsis gaditana|type=mRNA|length=4214bp
GGCCACCTCTGCTTGAGTGCTTCCATCGCATGAACCTAATTGGGCATTCA
TCGGACTGATTCCCACTGTGGTCTCCGTTTCCATTTCACAGTAGCATTTC
CCAGATCCCTTCCTCCTGCGCAACGCGAATCCGCCTTCCTTCAGCTTCCT
ACAAGCGCTGCACTTTCCGCAACAATGCATTTATCAAAAGTGCCCTTAAA
GCAACTAGCATGGCTAGTGATTGTCTTTAACGCGTGTGTGCAAGCTTTCC
GTCCCAAGCCTATCGTAATGTCGTCCAGCCCATCTTTGGAAGTACCTCCA
ATAAGCCCTACTCCCACCGAGCTCCGGCAGCCCCTCTCGTATCGCGTCGC
GGACAAGGTTGTTGGCACACTTTTTTCCATCGATCCCATATTTAATGTCC
TCGCCAAGAAAGCTCGGGAGTCGATCATTGCCCGTGGGGAAAAAATCGGG
GTCTCCTGGTCGGAGCGCGTGGAGGGACTTAAGCGACATATGGAGGAGCT
TGAAACCGAGTACGAGGGCGTGCATCGAAAGAGAGTAGTCATTCCTGAAT
ACTACCAGAAGCCTTTCCATGCATATAAAGAGGGAAATTTAGGCTGGGCG
CCAGCCATAGAGTTCGAGGCGGCTTCCCTCTCGGTCCACGCTCCTACCTA
CACTAGGGGGCCCACCGAGCTCCAGGAAGACGGGGATGCAAAGCTTCGCG
GTAATTTTCACAAGCGGATGAAAGAAATGCTTGCCAAGTTTTCCTTTGTC
CCATCTCGTATAGTCGATGTGGGCTGCGCCGCCGGCATGAGCACGTTCTG
TCTGCAGGCGTCCTTTCCAGAAGCTGAAGTGCTAGGCGTGGACCTCTCTC
CTTACATGCTGGCCGTAGCCAAGTATAACCTAAACGCGCGCCCGGAATTT
GCGCAAGTCAAGCGGGAAGGTCGCGTTGACTACGTGCATGCCGCCGGGGA
GGACTTGGGTCTGCCCGATGCCTCGGTGGACCTGGTTTCGATATGCCTGG
TCAACCACGAGTTGCCCAACGAGGCGGCTCGGGCGGTTTTCCGGGAAGCC
CACCGCGTCCTCCGCCCCGGAGGCGCTTTGGCTTTTATGGATATGGATCC
TACAGCGCCGGCGTTTCAACGCATTGTGAAAAACCCCATGCTGTTTGCTC
TGTTTAAGAGCACTGAGCCCTGGTTGAAGGAGTACGTGGTTTTGGACTTG
CCGAGTGAGCTAGCGAGAGCGGGTTTCAGCCATATGGATGTACGGGGCAA
CTCACCTCGCCATCGTACCGTGGTAGCGTTTAAATAGAGTGGCTGTAAAA
CCGGAAATTTTGATTCATGCGTGTTGCAATTGTGAATGAAGGGGGAGGGA
GGAGCCGTGAAATAGGAGTCAAATGAGAAAACTTGTTACAGGATGAGATG
CATTATCAAATGAAGTGGATTAGGACAAATTTCCGCGCGCTTACAATATA
TTTTTTGGGTAATGTCTTTTCTAACAAATCACTGGGAAGCATGAAACTAA
TTAAGGCGATCATCGAAAGATGTCATGCAACAGGGCCGACACTTGTCTTC
AGGCCATGCCACGCTCATTGAGGTAGAAGGTTGCATATAGCTGCCTTTAT
GAGAGCTCCAAAGGCGCATTGCTTGAAGCTAACCAGAAGACACCTCGCGG
TATATTCGCAACAGCGGCTGCTCCACCAACCTCTCGATGCCTTCTTTCTC
CTCCTCGAGGTAGGGAAGCGCAGTGCCCCCCCCTCCCAGTGCCGTCCCTT
CTCCGGCATCCACCACTTGCCAGACCTTATCCCGCTCCTCTTTTTTCGCG
TCCATTTCACCTTCTGCCCCTTGTGGCGCACGTGCGTTTGGTCGAGCCTT
TGTGATAAGCCCGGGAACCAAGAGCAAGGACACGAGAGCCAGAATCGCGC
CGAAACCAAGCGCCGCTTGGGTAGCCTTTTCTTCGGCGAAAATTTTCACA
AAGATAGGTCCTGAGAGGGCCACCAAGACCTGAGGCACACAGGCGAAGAT
GTTGAGACTACCTAGGTAAAGGCCGCGTTTGTCGGGTGGCGCCATCTGGG
CAATCAGCGCCCACGGCACCACCAGAAAAACCGCCCAGGGCAAGGCGAAC
ATGCCGATTACAATCGCTGCGGCATAAATTTTTCGTCGAGGGACTAAGAA
TGTCAAGCCATAACAGCCGGCGAGCAGAAGCTGAGCCACTGCCAGAGTAG
GGCGTGTCTTAAAACGATGCAAGATGTTAGGCAAGGCAATGGAAACCAGG
CCGGTTAGGATTGCGAAAATTACAAAGCCCAAAGAGGCAGCCTTTATGCC
TCTTTCGTACCGAACATATGCCTCTGAACCAACCGGTGCGCCACCGTCCC
CTTGATTCACGACCTTTCCCACCCACACGGCGATGAAGAGGGTGTGGTGA
AACCAAGACCACCACGAGAAGAACTGGAAGGCGCACACTCGGGCCAAAGC
CGGAGGCATATTGAAAAGGGTGCCAAATATCTTGCGTATTAGGCCTAAGG
GGGAGCGTTCGCCTTCGGGCGCGTGCTCGCTATCCACCTGTAGAGGCTCC
TCGTGAGTGGTGAACACTGTAAGAAGCGAGGTGATCAAAAGGCAGATCGC
GCAGATGACTGCCACGATCCGGAGATCTGCGCACTGCATTCGGCACTGCG
GTGATTCGAGAAGAGGCATAAAATGCGTCCACGGAACCGCGCATATGACG
AAGCCTATGACGTTGCCGATGGAGGACCACACAGCAATCAGGGCGTTCCC
GAGGCGCTGTTGCTCGGAAGGGGCGATGTCAGCAATCAGTGCTCGACACG
GGCCTGCTAAGCCGTTGTTTGCCATGTCAATAATCCATAACCCGATAATG
GCTGCAGCCATGGCACCTCCACGCTGCGACGCTGAATCGGGAAGTAATGC
CCCCAGATACGTGGCATTCCCTATGAGCATGAATCCCAACACAATTAAAA
GGACACTTCCAAATATGAAAGGACGTCGACGACCGAAACGAGAGTGGCAG
TGATCTGAAACCACGCCCATATATGGTTGTGCGATCAATCCGGAAATGGG
GCCGCAGAGACAAACGACTGAATAATACTTGTACGGCACCCCAATCACCA
GCAAGTACGGCATCAGCAAAGCCGCCTGGACAGCCCAATCTACTTGTACA
CCAAGATTTACAACCGTGGCAATTAAAAGCTTGCCAAGGGACTGGCGCTG
GGGTGGAGCCATTGCCGCAGGAGGAGGGGTACTTTGCGGATTGGTCGAGG
AGGAAGTGTTTTCTAATGCTGTCGTTGAAGCAGGAGGGGCTTGTGCGACC
GTCGCCGCCACAGCTTCCAACTCAATTGTGACTGGATTATTTTGGTCCCC
CCTCCTGCTTTTTCCTGCGCTCGGTTCTTCCTTAATCATTTTATGCGTTT
CATCGTCTACCTGAATGTTTGGGGTTGCATTAGGTACAGGGTTAGGGGTA
CCATGGACAATGCCAAAAATGTGGCAGCATCATGTGGTATGAGGGCGAAA
AAATACCATCTTATGACATGCGGGAAGGTTCCCGTTCATCGTGCGCGACT
TCCGGTGATCGCGTACATGTCCGATTCAGGCAGCAGCCCAGGAGGTTTTG
TTTCCCACGGAAGCAACATGGGCCATGGGCCGGAGAAAGAAAGGCCGCTG
CTTGTAATGTCAAAATTTTGGTTTTCTTCTCATGGGATACGAAGCACAAA
GCTAGAAGATAGGAATAGCAAGACTAATGGATAAGCTAAGATATCGGTCG
GCGTGTAGTATTGTGCCCACCTTCCTATGGGACAACTGAATGCTTGCGGT
CTCGTGGTGACGTAGTGAGTCAAATGATCAGAGATTTCGCCTTAATCGCG
CATTCTTCGAAAGCTCTCATGAACTCCATTCAGAATCTTGATGGTAAATA
AACCTAGTACTGACTATGCACAAGGGGATGCCCTGTTGAAAGATTGGAGT
GTGCACACAGTGACAGGCGGTGCGATTTTTAACCAAATAAATTTAATACT
GTTCAGCAAGGGGAAGGCGAGGTCAAACGATAATTGGCAAAGTATCGCTC
GTAAATCAATTGCATAGTACTTTTTATCAGCAATATTTCCGGTATTTTTA
CGTGGCCACTCCCTTCCTCTTGACCGTAGTATGCTACCACAATATCCACC
TCCTCTTTGGGAAGAACCGCATAAATAAGAGGGTGCCCATGAAAATGGAA
AGTATGATAGCAAT back to topprotein sequence of rna2426 >rna2426-protein ID=rna2426-protein|Name=rna2426|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MFVSSYNTAPLLFPFPHSPALTWIWPMGGSEQTAMLPHRRRLVDFSRLLK
ATERIHKASLGLSPGQRAYLLELNRLNAFLRALREQLVELHNLDLGVVVA
PKTLQEFSFRVDGLERSLMDRQQELRRFHASGALNGSKDNPSMSTKPSAV
TGPDITSGTVQGTRTTPCRESRGGNFLSGQAGKSKKGKGRGDRVDGGDED
KVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQR
NLDSLQVELKKTEEQLKRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKR
RWILW back to topmRNA from alignment at CM002459.1:358899..360137- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2426 ID=rna2426|Name=rna2426|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp|location=Sequence derived from alignment at CM002459.1:358899..360137- (Nannochloropsis gaditana)
TTTCGCGTCACGTGATTGGGCGAATGTTTGTTTCTTCTTACAACACTGCA
CCCTTATTATTTCCTTTTCCTCACAGTCCCGCTCTGACCTGGATCTGGCC
AATGGGAGGGAGTGAGCAGACGGCCATGCTCCCTCACCGGCGGCGCCTGG
TGGACTTCTCCCGGTTACTCAAGGCGACGGAGCGCATACATAAAGCATCT
CTGGGCTTGAGTCCTGGACAGAGGGCATACCTATTGGAATTGAATCGCCT
GAATGCGGTAAGGTGGCGGAATGGAATTTTCCTGTGGACAAAAATGAAGT
GACGGGGGGTAAAAATATATCTGCCTATCCCCTTTGACAGTTCCTGCGGG
CCTTGCGGGAGCAACTTGTCGAATTGCACAACCTCGATTTGGGCGTGGTA
GTGGCCCCGAAGACATTGCAAGAATTCAGCTTTCGTGTGGACGGATTGGA
ACGCTCTCTGATGGATCGGCAGCAGGAGTTGCGACGATTCCATGCCTCGG
GCGCTCTGAATGGCAGCAAGGACAATCCGAGTATGAGCACGAAGCCCTCT
GCAGTTACTGGTCCCGATATCACCTCTGGAACAGTCCAAGGCACTCGGAC
GACCCCGTGTCGCGAAAGTCGGGGGGGTAATTTCTTGTCCGGGCAGGCCG
GAAAATCGAAAAAAGGGAAGGGAAGAGGCGACAGGGTCGACGGGGGCGAT
GAGGACAAGGTGACCAAAGAGAAGGAGGCGCAGCAGGTTTTAACCGAGCA
ATTGGAGGAGCTGGTGGGTGCTTTGAAGGCTAGTTCGATGCTGGTACATA
CAAGTCTGCGGGCGCAGAACAAGGTAGGTCTCACGACCACGAGAGCGTCG
TGGATTTGGCGTCTTATTCAGCGATGCGCCTCCCCAGTGGGTAGCGTGGT
GCTCTTTATCAAAAAGTTAAAGTTGTAAATCACGCAAAACCAACACTCTC
ACTCAGGTGCTGGATAAGACGGAAGATGCGGCGCAGCGGAATTTGGACTC
GTTACAGGTGGAGCTGAAGAAAACTGAGGAGCAACTGAAGAGGAATTGGA
GCAATTCCCTGACATCTTGTTTTATGATTGCTATCATACTTTCCATTTTC
ATGGGCACCCTCTTATTTATGCGGTTCTTCCCAAAGAGGAGGTGGATATT
GTGGTAGCATACTACGGTCAAGAGGAAGGGAGTGGCCACGTAAAAATACC
GGAAATATTGCTGATAAAAAGTACTATGCAATTGATTTA back to topCoding sequence (CDS) from alignment at CM002459.1:358899..360137- >rna2426 ID=rna2426|Name=rna2426|organism=Nannochloropsis gaditana|type=CDS|length=2754bp|location=Sequence derived from alignment at CM002459.1:358899..360137- (Nannochloropsis gaditana)
GTGCTGGATAAGACGGAAGATGCGGCGCAGCGGAATTTGGACTCGTTACA
GGTGGAGCTGAAGAAAACTGAGGAGCAACTGAAGAGGAATTGGAGCAATT
CCCTGACATCTTGTTTTATGATTGCTATCATACTTTCCATTTTCATGGGC
ACCCTCTTATTTATGCGGTTCTTCCCAAAGAGGAGGTGGATATTGTGGTA
GTTCCTGCGGGCCTTGCGGGAGCAACTTGTCGAATTGCACAACCTCGATT
TGGGCGTGGTAGTGGCCCCGAAGACATTGCAAGAATTCAGCTTTCGTGTG
GACGGATTGGAACGCTCTCTGATGGATCGGCAGCAGGAGTTGCGACGATT
CCATGCCTCGGGCGCTCTGAATGGCAGCAAGGACAATCCGAGTATGAGCA
CGAAGCCCTCTGCAGTTACTGGTCCCGATATCACCTCTGGAACAGTCCAA
GGCACTCGGACGACCCCGTGTCGCGAAAGTCGGGGGGGTAATTTCTTGTC
CGGGCAGGCCGGAAAATCGAAAAAAGGGAAGGGAAGAGGCGACAGGGTCG
ACGGGGGCGATGAGGACAAGGTGACCAAAGAGAAGGAGGCGCAGCAGGTT
TTAACCGAGCAATTGGAGGAGCTGGTGGGTGCTTTGAAGGCTAGTTCGAT
GCTGGTACATACAAGTCTGCGGGCGCAGAACAAGATGTTTGTTTCTTCTT
ACAACACTGCACCCTTATTATTTCCTTTTCCTCACAGTCCCGCTCTGACC
TGGATCTGGCCAATGGGAGGGAGTGAGCAGACGGCCATGCTCCCTCACCG
GCGGCGCCTGGTGGACTTCTCCCGGTTACTCAAGGCGACGGAGCGCATAC
ATAAAGCATCTCTGGGCTTGAGTCCTGGACAGAGGGCATACCTATTGGAA
TTGAATCGCCTGAATGCGGTGCTGGATAAGACGGAAGATGCGGCGCAGCG
GAATTTGGACTCGTTACAGGTGGAGCTGAAGAAAACTGAGGAGCAACTGA
AGAGGAATTGGAGCAATTCCCTGACATCTTGTTTTATGATTGCTATCATA
CTTTCCATTTTCATGGGCACCCTCTTATTTATGCGGTTCTTCCCAAAGAG
GAGGTGGATATTGTGGTAGTTCCTGCGGGCCTTGCGGGAGCAACTTGTCG
AATTGCACAACCTCGATTTGGGCGTGGTAGTGGCCCCGAAGACATTGCAA
GAATTCAGCTTTCGTGTGGACGGATTGGAACGCTCTCTGATGGATCGGCA
GCAGGAGTTGCGACGATTCCATGCCTCGGGCGCTCTGAATGGCAGCAAGG
ACAATCCGAGTATGAGCACGAAGCCCTCTGCAGTTACTGGTCCCGATATC
ACCTCTGGAACAGTCCAAGGCACTCGGACGACCCCGTGTCGCGAAAGTCG
GGGGGGTAATTTCTTGTCCGGGCAGGCCGGAAAATCGAAAAAAGGGAAGG
GAAGAGGCGACAGGGTCGACGGGGGCGATGAGGACAAGGTGACCAAAGAG
AAGGAGGCGCAGCAGGTTTTAACCGAGCAATTGGAGGAGCTGGTGGGTGC
TTTGAAGGCTAGTTCGATGCTGGTACATACAAGTCTGCGGGCGCAGAACA
AGATGTTTGTTTCTTCTTACAACACTGCACCCTTATTATTTCCTTTTCCT
CACAGTCCCGCTCTGACCTGGATCTGGCCAATGGGAGGGAGTGAGCAGAC
GGCCATGCTCCCTCACCGGCGGCGCCTGGTGGACTTCTCCCGGTTACTCA
AGGCGACGGAGCGCATACATAAAGCATCTCTGGGCTTGAGTCCTGGACAG
AGGGCATACCTATTGGAATTGAATCGCCTGAATGCGGTGCTGGATAAGAC
GGAAGATGCGGCGCAGCGGAATTTGGACTCGTTACAGGTGGAGCTGAAGA
AAACTGAGGAGCAACTGAAGAGGAATTGGAGCAATTCCCTGACATCTTGT
TTTATGATTGCTATCATACTTTCCATTTTCATGGGCACCCTCTTATTTAT
GCGGTTCTTCCCAAAGAGGAGGTGGATATTGTGGTAGTTCCTGCGGGCCT
TGCGGGAGCAACTTGTCGAATTGCACAACCTCGATTTGGGCGTGGTAGTG
GCCCCGAAGACATTGCAAGAATTCAGCTTTCGTGTGGACGGATTGGAACG
CTCTCTGATGGATCGGCAGCAGGAGTTGCGACGATTCCATGCCTCGGGCG
CTCTGAATGGCAGCAAGGACAATCCGAGTATGAGCACGAAGCCCTCTGCA
GTTACTGGTCCCGATATCACCTCTGGAACAGTCCAAGGCACTCGGACGAC
CCCGTGTCGCGAAAGTCGGGGGGGTAATTTCTTGTCCGGGCAGGCCGGAA
AATCGAAAAAAGGGAAGGGAAGAGGCGACAGGGTCGACGGGGGCGATGAG
GACAAGGTGACCAAAGAGAAGGAGGCGCAGCAGGTTTTAACCGAGCAATT
GGAGGAGCTGGTGGGTGCTTTGAAGGCTAGTTCGATGCTGGTACATACAA
GTCTGCGGGCGCAGAACAAGATGTTTGTTTCTTCTTACAACACTGCACCC
TTATTATTTCCTTTTCCTCACAGTCCCGCTCTGACCTGGATCTGGCCAAT
GGGAGGGAGTGAGCAGACGGCCATGCTCCCTCACCGGCGGCGCCTGGTGG
ACTTCTCCCGGTTACTCAAGGCGACGGAGCGCATACATAAAGCATCTCTG
GGCTTGAGTCCTGGACAGAGGGCATACCTATTGGAATTGAATCGCCTGAA
TGCG back to top
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