EWM28286.1, cds2418 (CDS) Nannochloropsis gaditana

Overview
NameEWM28286.1
Unique Namecds2418
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:359881..360114 -
Alignment locationCM002459.1:359315..359797 -
Alignment locationCM002459.1:358981..359181 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28286.1
ProductVesicle transport protein, Use1
Orig transcript idgnl|cribi|Naga_100004g60.9217.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:359881..360114 -
CM002459.1supercontigCM002459.1:359315..359797 -
CM002459.1supercontigCM002459.1:358981..359181 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR019150Vesicle_transport_protein_Use1
Homology
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|585110631|gb|EWM28286.1| (Vesicle transport protein, Use1 [Nannochloropsis gaditana])

HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0
Query:    1 MFVSSYNTAPLLFPFPHSPALTWIWPMGGSEQTAMLPHRRRLVDFSRLLKATERIHKASLGLSPGQRAYLLELNRLNAFLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQELRRFHASGALNGSKDNPSMSTKPSAVTGPDITSGTVQGTRTTPCRESRGGNFLSGQAGKSKKGKGRGDRVDGGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRRWILW 305
            MFVSSYNTAPLLFPFPHSPALTWIWPMGGSEQTAMLPHRRRLVDFSRLLKATERIHKASLGLSPGQRAYLLELNRLNAFLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQELRRFHASGALNGSKDNPSMSTKPSAVTGPDITSGTVQGTRTTPCRESRGGNFLSGQAGKSKKGKGRGDRVDGGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRRWILW
Sbjct:    1 MFVSSYNTAPLLFPFPHSPALTWIWPMGGSEQTAMLPHRRRLVDFSRLLKATERIHKASLGLSPGQRAYLLELNRLNAFLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQELRRFHASGALNGSKDNPSMSTKPSAVTGPDITSGTVQGTRTTPCRESRGGNFLSGQAGKSKKGKGRGDRVDGGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRRWILW 305          
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|260829849|ref|XP_002609874.1| (hypothetical protein BRAFLDRAFT_125999 [Branchiostoma floridae] >gi|229295236|gb|EEN65884.1| hypothetical protein BRAFLDRAFT_125999 [Branchiostoma floridae])

HSP 1 Score: 66.6254 bits (161), Expect = 4.582e-9
Identity = 68/241 (28.22%), Postives = 112/241 (46.47%), Query Frame = 0
Query:   75 RLNAFLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQEL--RRFHASGALNGSKDNPSMSTKPSAVTGPDITSGTVQGTRT---TPCRESRGGNF-----LSGQAGKSK-KGKGRGDRVDGGDEDKV-TKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKR--NWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRR 301
            RL  ++ AL+ QL EL+NL          L+E++ +V+ L++ +   + E    R  A+  +   + +    + PS+      T       R+      RE   G       + G AG+   K   RG      D D V  + ++ Q  + E++  L  +LK + +     +R   KVLDK+   A+ N D L+VE ++ E+ +KR  NW    T   M+AI+  IF+  +LF+R FPK R
Sbjct:   30 RLEKYIEALQGQLSELNNLPSPGKPTSDILKEYNKKVEFLKKYIEAEKLESPSERVLATELMKPGQPSLEHYSTPSSQLSNRKTRELHARARSRYQKDMREELLGKMHQMHQVQGGAGECPYKESVRGGEEPEEDLDTVLQRHQDMQAKIAEEMLTLARSLKHNQLAAQNIIREDTKVLDKSSKLAEGNYDRLKVETERLEQHVKRSCNW----TMWTMLAIVCIIFLFMILFIRLFPKPR 266          
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|223993497|ref|XP_002286432.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977747|gb|EED96073.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 66.2402 bits (160), Expect = 1.813e-8
Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 0
Query:  196 GGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQL--KRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRR 301
              D D +  +K+ QQ+L ++L  L   LK+S++ ++ +L+ Q   L+  E  AQ NLDS+    KK E++L  KR W   LT+  ++  ++ +++   L MR  PKRR
Sbjct:  241 NDDIDPIEFQKQQQQLLEDELSSLATRLKSSTLAMNATLQTQTHDLEDMEQLAQSNLDSVSSTTKKVEDRLAKKRGWKKRLTTWSLVGSVIGMWVFCFLLMRTIPKRR 348          
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|397636540|gb|EJK72316.1| (hypothetical protein THAOC_06163 [Thalassiosira oceanica])

HSP 1 Score: 65.4698 bits (158), Expect = 3.837e-8
Identity = 35/106 (33.02%), Postives = 61/106 (57.55%), Query Frame = 0
Query:  198 DEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRN--WSNSLTSCFMIAIILSIFMGTLLFMRFFPKRR 301
            D D    ++E Q++L  +L  +   LK+S+M ++ +L+ Q K LD  E+ AQ NLD +    KK E++LKR   W  +L +  +I  ++ +++   + MR  PKR+
Sbjct:  202 DLDAAEIQREQQEMLEAELASMATRLKSSTMAMNATLKTQTKDLDAMEELAQTNLDRVSDTAKKVEDRLKRKKGWKKTLATWSLIGTVVGVWVLCFMVMRTLPKRK 307          
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|298705176|emb|CBJ28607.1| (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 63.1586 bits (152), Expect = 2.014e-7
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 0
Query:  202 VTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTS-CFMIAIILSIFMGTLLFMRFFPKRR 301
               E EA QV  E +  + G LK SS+ ++ +LR Q +VL+ T DAA +N+D ++ E  +  E+L++  +    S C MI ++++ F    L +  F KRR
Sbjct:  187 AADEAEADQVAQE-ISSMAGRLKESSVAINQTLRTQTQVLEDTGDAATQNVDRVKRENARVSERLRKKRAAMFASWCMMITVVVTFFATYFLVIVPFEKRR 286          
The following BLAST results are available for this feature:
BLAST of EWM28286.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585110631|gb|EWM28286.1|0.000e+0100.00Vesicle transport protein, Use1 [Nannochloropsis g... [more]
gi|260829849|ref|XP_002609874.1|4.582e-928.22hypothetical protein BRAFLDRAFT_125999 [Branchiost... [more]
gi|223993497|ref|XP_002286432.1|1.813e-834.26predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397636540|gb|EJK72316.1|3.837e-833.02hypothetical protein THAOC_06163 [Thalassiosira oc... [more]
gi|298705176|emb|CBJ28607.1|2.014e-734.65expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2426rna2426Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications