EWM28286.1, cds2418 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|585110631|gb|EWM28286.1| (Vesicle transport protein, Use1 [Nannochloropsis gaditana]) HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0 Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0
Query: 1 MFVSSYNTAPLLFPFPHSPALTWIWPMGGSEQTAMLPHRRRLVDFSRLLKATERIHKASLGLSPGQRAYLLELNRLNAFLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQELRRFHASGALNGSKDNPSMSTKPSAVTGPDITSGTVQGTRTTPCRESRGGNFLSGQAGKSKKGKGRGDRVDGGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRRWILW 305
MFVSSYNTAPLLFPFPHSPALTWIWPMGGSEQTAMLPHRRRLVDFSRLLKATERIHKASLGLSPGQRAYLLELNRLNAFLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQELRRFHASGALNGSKDNPSMSTKPSAVTGPDITSGTVQGTRTTPCRESRGGNFLSGQAGKSKKGKGRGDRVDGGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRRWILW
Sbjct: 1 MFVSSYNTAPLLFPFPHSPALTWIWPMGGSEQTAMLPHRRRLVDFSRLLKATERIHKASLGLSPGQRAYLLELNRLNAFLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQELRRFHASGALNGSKDNPSMSTKPSAVTGPDITSGTVQGTRTTPCRESRGGNFLSGQAGKSKKGKGRGDRVDGGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRRWILW 305
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|260829849|ref|XP_002609874.1| (hypothetical protein BRAFLDRAFT_125999 [Branchiostoma floridae] >gi|229295236|gb|EEN65884.1| hypothetical protein BRAFLDRAFT_125999 [Branchiostoma floridae]) HSP 1 Score: 66.6254 bits (161), Expect = 4.582e-9 Identity = 68/241 (28.22%), Postives = 112/241 (46.47%), Query Frame = 0
Query: 75 RLNAFLRALREQLVELHNLDLGVVVAPKTLQEFSFRVDGLERSLMDRQQEL--RRFHASGALNGSKDNPSMSTKPSAVTGPDITSGTVQGTRT---TPCRESRGGNF-----LSGQAGKSK-KGKGRGDRVDGGDEDKV-TKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKR--NWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRR 301
RL ++ AL+ QL EL+NL L+E++ +V+ L++ + + E R A+ + + + + PS+ T R+ RE G + G AG+ K RG D D V + ++ Q + E++ L +LK + + +R KVLDK+ A+ N D L+VE ++ E+ +KR NW T M+AI+ IF+ +LF+R FPK R
Sbjct: 30 RLEKYIEALQGQLSELNNLPSPGKPTSDILKEYNKKVEFLKKYIEAEKLESPSERVLATELMKPGQPSLEHYSTPSSQLSNRKTRELHARARSRYQKDMREELLGKMHQMHQVQGGAGECPYKESVRGGEEPEEDLDTVLQRHQDMQAKIAEEMLTLARSLKHNQLAAQNIIREDTKVLDKSSKLAEGNYDRLKVETERLEQHVKRSCNW----TMWTMLAIVCIIFLFMILFIRLFPKPR 266
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|223993497|ref|XP_002286432.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977747|gb|EED96073.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 66.2402 bits (160), Expect = 1.813e-8 Identity = 37/108 (34.26%), Postives = 62/108 (57.41%), Query Frame = 0
Query: 196 GGDEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQL--KRNWSNSLTSCFMIAIILSIFMGTLLFMRFFPKRR 301
D D + +K+ QQ+L ++L L LK+S++ ++ +L+ Q L+ E AQ NLDS+ KK E++L KR W LT+ ++ ++ +++ L MR PKRR
Sbjct: 241 NDDIDPIEFQKQQQQLLEDELSSLATRLKSSTLAMNATLQTQTHDLEDMEQLAQSNLDSVSSTTKKVEDRLAKKRGWKKRLTTWSLVGSVIGMWVFCFLLMRTIPKRR 348
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|397636540|gb|EJK72316.1| (hypothetical protein THAOC_06163 [Thalassiosira oceanica]) HSP 1 Score: 65.4698 bits (158), Expect = 3.837e-8 Identity = 35/106 (33.02%), Postives = 61/106 (57.55%), Query Frame = 0
Query: 198 DEDKVTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRN--WSNSLTSCFMIAIILSIFMGTLLFMRFFPKRR 301
D D ++E Q++L +L + LK+S+M ++ +L+ Q K LD E+ AQ NLD + KK E++LKR W +L + +I ++ +++ + MR PKR+
Sbjct: 202 DLDAAEIQREQQEMLEAELASMATRLKSSTMAMNATLKTQTKDLDAMEELAQTNLDRVSDTAKKVEDRLKRKKGWKKTLATWSLIGTVVGVWVLCFMVMRTLPKRK 307
BLAST of EWM28286.1 vs. NCBI_GenBank
Match: gi|298705176|emb|CBJ28607.1| (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 63.1586 bits (152), Expect = 2.014e-7 Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 0
Query: 202 VTKEKEAQQVLTEQLEELVGALKASSMLVHTSLRAQNKVLDKTEDAAQRNLDSLQVELKKTEEQLKRNWSNSLTS-CFMIAIILSIFMGTLLFMRFFPKRR 301
E EA QV E + + G LK SS+ ++ +LR Q +VL+ T DAA +N+D ++ E + E+L++ + S C MI ++++ F L + F KRR
Sbjct: 187 AADEAEADQVAQE-ISSMAGRLKESSVAINQTLRTQTQVLEDTGDAATQNVDRVKRENARVSERLRKKRAAMFASWCMMITVVVTFFATYFLVIVPFEKRR 286 The following BLAST results are available for this feature:
BLAST of EWM28286.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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