|
|
Properties
| Property Name | Value |
|---|
| Product | Brix domain protein |
| Orig transcript id | gnl|cribi|Naga_100004g57.9193.mrna |
| Orig protein id | gnl|cribi|Naga_100004g57.9193 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:353644..354645 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2424 ID=rna2424|Name=rna2424|organism=Nannochloropsis gaditana|type=mRNA|length=1790bp
CGAGTAAAAGCTTGTTGCGGGTCTCGTCTGCGACAAAAAGCTCCTGATGG
TCAAGTCACTGGAAGTTAACGGCCACCTAACCAATGGAGTCGTGACGATC
ATACCAATGAGAAACATAAATTTCCGTCAGCCCCTTGTCGCAAACTTGCT
GATCCCAAAAAAAGGTCAACGGGAGTTATCTTGACCTTTTTGCTTTCGCG
TGTCTGAATCCGGCCCCGACCGTTGCGTCGGCCGTCTCGGAGACGCGGTC
TGGAAAGCCCGGAAATACTAAATCTAGGCACGCACGACCCACCACATTCA
GAACAGGTCATCTTTTCATTGTAGTCTGCATGTTGTGGGATGTGGTCTGA
ATCCATATGTTGGATGGGTGGTTTGAACTGTTCACCAGATGACCGAGCAG
TTTCGCTTTCAGTCGCGCTTGCATAGCAAACCGTAGGCTTATTCTCATAC
CATTGCCCGCAAAAGAACAGCAGTGGCGGCACCAGGCTCTATCCATAGAG
CAAGCAAGCTTTCCACCTTCACACACTGTCGACCGTCCCTGCGCGCGATG
CCCGGCTACCTCAGGAAATGGGCAGGGACGCTGCTCGTAGTAGCACCGAC
GCTTACCATGGCCTTCGCAGCGGGCAATCCTCCATCTTCGTCCGCACACA
GTGGTAACAGCGCTAATAACAAGTGTGAAACGAGCATGCCTGGGCCCGCC
GGTTTGAAAATGCACAGGGGCTTGCAAACACGGACTAGCTATGTCATCGT
TGAAGAATTTGCTCATGATCCAAGTGCTTTTACGCAAGGCCTGGTGTACG
AGGAGGATGGCACTTTCCTGGAAGGAACAGGGCTGTACGGTAAATCGAAA
CTACGACGAGTGGATGCGAGCACGGGCGAGGTGCTGGTCTCACACGACCT
CAGTGCAGATAGCTTCGGAGAGGGTATCGTGGCTGTTGATGACAAGATAA
TCCAGCTCACATGGAAAGAGCGGAAAGCCTTGGTCTACGGCCGACAGAAC
CTGACACTGCTGAACGATTTCAAGTACGAGACGGTCACTGGAGAAGGGTG
GGGGATTACGACGGATGGGGCACGTTTGATCGTCAGCGACGGCTCTGCCA
ATTTGTTCTTTTGGGACAAGGACACTTACAAGGAAATTCCTGAATCGCGC
CTCCTCGTCCAAGACGGCCACGGCAACGCCGTAAAGCATCTGAACGAGCT
GGAGTGGGCGCATGGATATGTGTGGGCGAACGTGTGGCTGACGGACGACA
TCGTGCAAATCGACCCCGCCTCTGGGAAGGTGGTAGCCTTTCACGACTTC
TCTGCCCTCTTTCCTCACCACCTTCGGGTCAGTTTAGATCAAGTCCTCAA
CGGCATCGCCTTTGATGCGGAAAATGACATCTTCTACCTGACGGGGAAGT
GGTTTCCCAAGTATTTTAAGGTAAAGATATGCTTACCTGAGGCGGCGGTG
TGAGGGTCGAGTAACGCCCCCGCCCTGACTAAAGAAGGCAATTCGAAAGG
AGAAGGACATATCAAGCAGGAAATATTTAGACGAGGAACGACAAAGCATT
TGTAGAGTATTGGTACAAGTGGAGGCGGCATGCACGCGCGAAAAATCTGT
TTTACCCTGAGAAACAGAGAGGAAAATGTCCAAAGAAAAACCACATCGCC
AGGCTTCGAATCACGTATTTTCCGTATTTAACATGCTTTGTATCCCGATG
TGTGTGCTGATCACCGCCCTGTGAGTCGTTTATCAAAGCAGCCGCCTCTT
CTTCGCCGTGTTCATGTAGGGCCTAAAGACGAACTCCGTC back to topprotein sequence of rna2424 >rna2424-protein ID=rna2424-protein|Name=rna2424|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
MHCPWLRRTATKQIYLTLHRTRSHSGAKQLSPPLCEFFLQVLMSTIRRQT
RLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHE
INLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKL
IFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPL
GPTAYFTISNVVMRHDIEDRAAVSEAYPHLILEGFVSTLGRRVADILKFT
FPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLT
VFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL back to topmRNA from alignment at CM002459.1:353644..354645- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna2424 ID=rna2424|Name=rna2424|organism=Nannochloropsis gaditana|type=mRNA|length=1002bp|location=Sequence derived from alignment at CM002459.1:353644..354645- (Nannochloropsis gaditana)
ATGCATTGTCCATGGCTGCGGAGAACAGCTACTAAGCAGATCTATCTTAC
CCTCCACCGTACACGCTCGCACAGCGGAGCAAAACAGCTTTCCCCGCCCC
TCTGCGAGTTTTTCCTGCAAGTTTTAATGAGCACCATCCGACGCCAGACA
CGCTTACGGAAGGAATATCTTTACCGGAAATCTTTGGAGGGCAAGGAAAA
GGCTGCATATGAACGCAAGCAACAGATCCGCAATGCTCTACAGGAAGGCA
AACCTATTCCAACAGAGCTCCGGGGGGAAGAGGGCAATTGGCGGCACGAA
ATAAATCTTGAAGACGATATTACAGCCAGGCCTCATAATCATATCGACGA
TGAATATGGGTTAGCAGGGACGCGAGACCCGAAAGTTTGCGTAACAACAT
CGCGAGATCCGTCGTCACGGCTGAAGCAGTTCATGAAGGAGGTGAAGCTC
ATTTTTCCCAACGCCCAGGCCGTCAACCGGGGCAATACCAAAGTGCCCGA
GCTGGTGGAGGCCTGTCGTACGCATGACTTTACGGACATCGTCGTGGTGC
AAGAAACGCGTGGTCAACCCGATGGGCTGCTTGTGTGCCACTTACCCTTA
GGCCCCACAGCGTATTTTACCATCTCGAACGTGGTGATGCGCCATGACAT
TGAAGACCGCGCTGCCGTCTCAGAGGCGTACCCTCACTTGATTCTCGAGG
GCTTCGTGTCTACTCTTGGCCGACGTGTGGCGGACATCTTGAAGTTCACG
TTCCCGGCCCCCCGCCCCGCGTCCCAACGTGTGGTCACCTTCGCGAACGA
GGACGACCACATCGTCTTCCGGCACCACACCTTTGAGAAGGCGCCGGGAA
CGAAAGGAGAAGTTACTCTGAAGGAGATTGGCCCACGCTTTGATTTGACT
GTGTTTCAGGTAAAACTAGGAACGCTGGAGCAAACGGACGCAGAGACGGA
GTTCGTCTTTAGGCCCTACATGAACACGGCGAAGAAGAGGCGGCTGCTTT
GA back to topCoding sequence (CDS) from alignment at CM002459.1:353644..354645- >rna2424 ID=rna2424|Name=rna2424|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at CM002459.1:353644..354645- (Nannochloropsis gaditana)
ATGCATTGTCCATGGCTGCGGAGAACAGCTACTAAGCAGATCTATCTTAC
CCTCCACCGTACACGCTCGCACAGCGGAGCAAAACAGCTTTCCCCGCCCC
TCTGCGAGTTTTTCCTGCAAGTTTTAATGAGCACCATCCGACGCCAGACA
CGCTTACGGAAGGAATATCTTTACCGGAAATCTTTGGAGGGCAAGGAAAA
GGCTGCATATGAACGCAAGCAACAGATCCGCAATGCTCTACAGGAAGGCA
AACCTATTCCAACAGAGCTCCGGGGGGAAGAGGGCAATTGGCGGCACGAA
ATAAATCTTGAAGACGATATTACAGCCAGGCCTCATAATCATATCGACGA
TGAATATGGGTTAGCAGGGACGCGAGACCCGAAAGTTTGCGTAACAACAT
CGCGAGATCCGTCGTCACGGCTGAAGCAGTTCATGAAGGAGGTGAAGCTC
ATTTTTCCCAACGCCCAGGCCGTCAACCGGGGCAATACCAAAGTGCCCGA
GCTGGTGGAGGCCTGTCGTACGCATGACTTTACGGACATCGTCGTGGTGC
AAGAAACGCGTGGTCAACCCGATGGGCTGCTTGTGTGCCACTTACCCTTA
GGCCCCACAGCGTATTTTACCATCTCGAACGTGGTGATGCGCCATGACAT
TGAAGACCGCGCTGCCGTCTCAGAGGCGTACCCTCACTTGATTCTCGAGG
GCTTCGTGTCTACTCTTGGCCGACGTGTGGCGGACATCTTGAAGTTCACG
TTCCCGGCCCCCCGCCCCGCGTCCCAACGTGTGGTCACCTTCGCGAACGA
GGACGACCACATCGTCTTCCGGCACCACACCTTTGAGAAGGCGCCGGGAA
CGAAAGGAGAAGTTACTCTGAAGGAGATTGGCCCACGCTTTGATTTGACT
GTGTTTCAGGTAAAACTAGGAACGCTGGAGCAAACGGACGCAGAGACGGA
GTTCGTCTTTAGGCCCTACATGAACACGGCGAAGAAGAGGCGGCTGCTTT
GA back to top
|