EWM28262.1, cds2416 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|585110607|gb|EWM28262.1| (Brix domain protein [Nannochloropsis gaditana]) HSP 1 Score: 692.96 bits (1787), Expect = 0.000e+0 Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 0
Query: 1 MHCPWLRRTATKQIYLTLHRTRSHSGAKQLSPPLCEFFLQVLMSTIRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAVSEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
MHCPWLRRTATKQIYLTLHRTRSHSGAKQLSPPLCEFFLQVLMSTIRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAVSEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL
Sbjct: 1 MHCPWLRRTATKQIYLTLHRTRSHSGAKQLSPPLCEFFLQVLMSTIRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAVSEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|971510571|dbj|GAQ87625.1| (IMP4 [Klebsormidium nitens]) HSP 1 Score: 402.905 bits (1034), Expect = 2.684e-138 Identity = 189/291 (64.95%), Postives = 233/291 (80.07%), Query Frame = 0
Query: 46 IRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAV---SEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
+RR RLR+EYLYRKSLEGKE+A YERK++IR AL EGKPIPTELR EE R EI LEDD+TA HIDDEY AG RDPK+ +TTSRDPSSRL QF+KE+K++FPNAQ +NRG + ++VEACR++DFTDIV+V E RG+PDGL+VCHLP GPTAYF +SNVV RHDI+DRAAV SEA+PHLIL F + LG R +ILKF FP P+ S+R++TFAN+ D+I FRHH +EK G K V LKE+GPRF+L ++QVKLGT++Q++AE E+V RPYMN+A+KR L
Sbjct: 2 LRRNARLRREYLYRKSLEGKERAVYERKRKIREALAEGKPIPTELRNEEAALRQEIELEDDVTAEQRTHIDDEYARAGERDPKILLTTSRDPSSRLTQFVKELKIVFPNAQRINRGGQVISQIVEACRSNDFTDIVMVHEHRGEPDGLVVCHLPFGPTAYFGLSNVVTRHDIKDRAAVGTMSEAFPHLILNNFNTKLGLRTQNILKFLFPVPKDESKRIITFANQSDYISFRHHIYEKPKGAKS-VELKEVGPRFELRLYQVKLGTMDQSEAEDEWVIRPYMNSARKRTAL 291
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|586669132|ref|XP_006836257.1| (U3 small nucleolar ribonucleoprotein protein IMP4 [Amborella trichopoda] >gi|548838757|gb|ERM99110.1| hypothetical protein AMTR_s00101p00134540 [Amborella trichopoda]) HSP 1 Score: 390.193 bits (1001), Expect = 2.399e-133 Identity = 182/291 (62.54%), Postives = 230/291 (79.04%), Query Frame = 0
Query: 46 IRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAV---SEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
+RR RLR+EYLYRK+LEGKE+ YE+K++IR AL+EGKPIPTELR EE RHEI+LEDD TA H+DDEY A DPK+ +TTSRDPSSRL QF+KE+K +FPNAQ +NRGN + E+VE CRTHDFTDIV+V E RG+PDGL+VCHLP GPTAYF + NVV RHDI+D+ + SEAYPHLIL F S LG R A+ILK FP P+P S+R++TFAN+ D+I FRHH ++K G K + LKE+GPRF+L ++Q+KLGT++Q++A+ E+V RPYMNTAKK++ L
Sbjct: 2 LRRNIRLRREYLYRKNLEGKERLLYEKKRKIRKALEEGKPIPTELRKEEFALRHEIDLEDDQTAVQKTHVDDEYANASEMDPKILLTTSRDPSSRLSQFVKELKFVFPNAQRMNRGNQVISEIVETCRTHDFTDIVMVHEHRGEPDGLIVCHLPFGPTAYFGLLNVVTRHDIKDKKVIGTMSEAYPHLILHNFSSKLGERTANILKHLFPVPKPDSKRIITFANQSDYISFRHHVYQKDGGPKS-IELKEVGPRFELRLYQIKLGTVDQSEAQNEWVIRPYMNTAKKQKAL 291
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|302818007|ref|XP_002990678.1| (hypothetical protein SELMODRAFT_185462 [Selaginella moellendorffii] >gi|300141600|gb|EFJ08310.1| hypothetical protein SELMODRAFT_185462 [Selaginella moellendorffii]) HSP 1 Score: 389.037 bits (998), Expect = 6.318e-133 Identity = 176/291 (60.48%), Postives = 231/291 (79.38%), Query Frame = 0
Query: 46 IRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDR---AAVSEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
IRR RLR+EYLYRKSLEGKE+ YE+K++I+ ALQEGKP+PTELR +E + R EI+LED+ TA P H+DDEY AG DPK+ +TTSRDPSSRL QF+KE+K++FPNAQ +NRG + E+VE+CR HDFTDI++V E RG+PDGL+VCHLP GPTAYF + NVV RHDI+D+ +SEAYPHLIL F + LG R ++ILK+ FP P+P S+R++TFAN+ D+I FRHH +EK G K + LKE+GPRF+L ++Q+KLGT++Q +A+ E+V RPYMN+++KR L
Sbjct: 2 IRRNARLRREYLYRKSLEGKEREVYEKKRKIKQALQEGKPLPTELRNDEASLRQEIDLEDENTAEPTTHVDDEYAYAGEVDPKILLTTSRDPSSRLTQFVKELKIVFPNAQRMNRGGQVIAEIVESCRAHDFTDIIMVHEHRGEPDGLIVCHLPYGPTAYFGLMNVVTRHDIKDKKGLGTMSEAYPHLILNNFNTKLGMRTSNILKYLFPVPKPDSKRLITFANQQDYISFRHHVYEKQGGVKS-IELKEVGPRFELRLYQIKLGTVDQVEAQNEWVIRPYMNSSRKRAAL 291
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|695055207|ref|XP_009415771.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 387.497 bits (994), Expect = 2.688e-132 Identity = 179/291 (61.51%), Postives = 232/291 (79.73%), Query Frame = 0
Query: 46 IRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAV---SEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
+RR TRLR+EYLYRKSLEGKE+ YE+K++IR AL+EGKPIPTELR EE R EI+LED+ TA P HIDDEY A +DP++ +TTSR+PS L QF+KE+K++FPN+ +NRG + E++E+CR H+FTD+V+V E RGQPDGL+VCHLP GPTAYF + NVV RHDI+D+ AV SEAYPHLIL+ F S LG+R A+ILK FP P+P S+R++TFAN+ D+I FRHH +EK G K V LKE+GPRF+L ++Q+KLGT++Q++A+ E+V RPYMNTAKKR +L
Sbjct: 2 LRRNTRLRREYLYRKSLEGKEREYYEKKRKIREALEEGKPIPTELRNEEAALRQEIDLEDEYTAVPRTHIDDEYATASEKDPRILLTTSRNPSQPLTQFVKELKIVFPNSTRMNRGGQVISEIIESCRAHEFTDVVLVHEHRGQPDGLIVCHLPFGPTAYFGLLNVVTRHDIKDKKAVGTMSEAYPHLILDNFTSKLGQRTANILKHLFPEPKPDSKRIITFANQSDYISFRHHVYEKRGGPKS-VELKEVGPRFELRLYQIKLGTVDQSEAQNEWVIRPYMNTAKKRNVL 291
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|1026765704|gb|OAE26357.1| (hypothetical protein AXG93_4324s1240 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 386.726 bits (992), Expect = 5.566e-132 Identity = 178/291 (61.17%), Postives = 230/291 (79.04%), Query Frame = 0
Query: 46 IRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDR---AAVSEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
IRR TRLR+EYLYRKSLEGKE+ YE+K++IR AL+EGKPIPTELR EE R EI+LEDD TA HIDDEY A +DPK+ +TTSRDPSSRL QF+KE+K++FPNAQ +NRG + E+VE+CR+HDFTDI++V E RG+PDGL+VCHLP GPTAYF + NVV RHDI+D+ +SEAYPHLILE F + LG+R A+ILK+ FP P+ ++R++T AN D+I FRHH +EK G K + LKE+GPRF+L ++Q+KLGT++Q +A+ E+V RPYMN+++KR L
Sbjct: 2 IRRTTRLRREYLYRKSLEGKERTLYEKKRKIRLALEEGKPIPTELRNEEAALREEIDLEDDNTAELRTHIDDEYAHADEKDPKILLTTSRDPSSRLTQFVKELKIVFPNAQRINRGGQVISEIVESCRSHDFTDIIMVHEHRGEPDGLIVCHLPFGPTAYFGLLNVVTRHDIKDKQTLGTMSEAYPHLILENFSTKLGQRTANILKYLFPEPKADTKRIITMANSADYISFRHHVYEKPAGVKS-IELKEVGPRFELRLYQIKLGTMDQAEAQNEWVIRPYMNSSRKRTAL 291
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|1173945963|gb|OQR94539.1| (U3 small nucleolar ribonucleoprotein IMP4 [Achlya hypogyna]) HSP 1 Score: 384.03 bits (985), Expect = 5.420e-131 Identity = 176/289 (60.90%), Postives = 231/289 (79.93%), Query Frame = 0
Query: 45 TIRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAVSEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
++RR R+R+EYLYRK LEG+E+A YERK Q++ A++ GK IPTELRG E + R E+ +DD P +HIDDEY AG DPK+ +TTSRDPS+RLK+F +EV+LIFPNA +NRG + +LV++ R ++FTD+V++ ETRG+PDGL+VCHLP GPTAYF++ NVVMRHDIEDRA VSEAYPH+IL+ F ST+G+RV +ILK+ FP P+P S+RV+TF+N DD I FRHH F+K T EV L+E GPRF+L ++Q+KLGT+EQ +AE E+V RPYMNTAKKRR++
Sbjct: 2 SVRRNVRMRREYLYRKGLEGQERAQYERKVQLKQAIESGKAIPTELRGVESSLRKELEYDDDKHIVPKSHIDDEYQNAGMFDPKIAITTSRDPSARLKKFAQEVRLIFPNAVRLNRGAHTIGDLVDSARANEFTDLVMITETRGEPDGLVVCHLPYGPTAYFSLQNVVMRHDIEDRATVSEAYPHIILDKFQSTMGQRVGNILKYLFPVPKPDSKRVITFSNTDDFISFRHHVFKK---TGREVELQECGPRFELQLYQIKLGTMEQKEAENEWVLRPYMNTAKKRRVI 287
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|1072232994|gb|OEU17725.1| (Brix-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 382.874 bits (982), Expect = 2.174e-130 Identity = 177/291 (60.82%), Postives = 231/291 (79.38%), Query Frame = 0
Query: 44 STIRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAA-VSEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
++ RRQTRLR+EYLYRKSLEG+EKAAYE+K+ IR AL GKP+PTE+R E++ ED T P +HID+EYG AG +P++CVTTSRDPSSRLKQF KE+KL+ PN+ +NRGN +V E++E+CR +FTD++VVQETRG+PDGL++CHLPLGPTAYF+I+N VMRHD++ AA +SEAYPH+IL F S LG+RV +ILK FP PRP ++R+VTF+N++D I FRHH + K VTL E+GPRF+L ++Q++LGTLEQ +AE E+V RPY NTAKKR++L
Sbjct: 8 ASKRRQTRLRREYLYRKSLEGREKAAYEQKRVIREALASGKPLPTEVRASYDKMIKEVDAEDITTETPKSHIDNEYGDAGLLEPRICVTTSRDPSSRLKQFSKEMKLLIPNSTRMNRGNNRVDEMIESCRQSEFTDVIVVQETRGEPDGLVICHLPLGPTAYFSINNTVMRHDLDPPAAPMSEAYPHIILNNFNSELGKRVGNILKCLFPVPRPDTKRIVTFSNDNDFISFRHHMYSKP--AHDSVTLHEVGPRFELRLYQIRLGTLEQKEAENEYVLRPYQNTAKKRKML 296
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|502127749|ref|XP_004499820.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Cicer arietinum]) HSP 1 Score: 382.489 bits (981), Expect = 3.194e-130 Identity = 175/291 (60.14%), Postives = 229/291 (78.69%), Query Frame = 0
Query: 46 IRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAVS---EAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
+RR RLR+EYLYRKSLEGKE+ YE+K++IR ALQEGKPIPTELR EE R EI+LED+ TA P HIDDEY A +DPK+ +TTSRDPS+ L+QF+KE+ ++FPNAQ +NRG + E++E+CR+HD+TD+++V E RG PDGL+VCHLP GPTAYF + NVV RH+I D+ A+ EAYPHLIL+ F + LG R A+ILK+ FP P+P ++R+VTFAN+ D+I FRHH +EK G K V LKEIGPRF+L ++Q+KLGT++Q +A+ E+V RPYMNT +KR+ L
Sbjct: 2 LRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKPIPTELRNEEAALRREIDLEDENTAVPRTHIDDEYAFAAEKDPKILLTTSRDPSAPLQQFVKELSIVFPNAQRMNRGGQVISEIIESCRSHDYTDVILVHEHRGVPDGLIVCHLPYGPTAYFGLLNVVTRHEIRDKKAIGTMPEAYPHLILDNFSTKLGERTANILKYLFPVPKPDTKRIVTFANKSDYISFRHHIYEKQGGPKS-VELKEIGPRFELRLYQIKLGTVDQAEAQLEWVIRPYMNTTRKRKFL 291
BLAST of EWM28262.1 vs. NCBI_GenBank
Match: gi|672130031|ref|XP_008788540.1| (PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Phoenix dactylifera]) HSP 1 Score: 382.104 bits (980), Expect = 3.602e-130 Identity = 173/291 (59.45%), Postives = 231/291 (79.38%), Query Frame = 0
Query: 46 IRRQTRLRKEYLYRKSLEGKEKAAYERKQQIRNALQEGKPIPTELRGEEGNWRHEINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAV---SEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDHIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRLL 333
+RR TRLR+EYLYRKSLEGKE+ YE+K++IR AL+EGKPIPTELR EE R EI+LED+ TA P HIDDEY A +DPK+ +TTSR+PS+ L QF+KE+K +FPN+ +NRG + E++E+CR H+FTD+++V E RG+PDGL+VCHLP GPTAYF + NVV RHDI+D+ A+ SEAYPHLIL+ F + LG+R A++LK FP P+P S+R++TFAN D+I FRHH +EK G K + LKE+GPRF+L ++Q+KLGT++Q++A+ E+V RP+MNTAKKR +L
Sbjct: 2 LRRNTRLRREYLYRKSLEGKEREYYEKKRKIREALEEGKPIPTELRNEEAALRQEIDLEDEYTAVPRTHIDDEYASASAKDPKILLTTSRNPSAPLTQFVKELKFVFPNSTRMNRGGQVISEIIESCRAHEFTDVILVHEHRGEPDGLIVCHLPFGPTAYFGLLNVVTRHDIKDKKAIGTMSEAYPHLILDNFSTKLGQRTANVLKHLFPVPKPNSKRIITFANRSDYISFRHHVYEKHGGPKS-IELKEVGPRFELRLYQIKLGTVDQSEAQNEWVIRPFMNTAKKRNVL 291 The following BLAST results are available for this feature:
BLAST of EWM28262.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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