|
|
Properties
| Property Name | Value |
|---|
| Product | transmembrane protein |
| Orig transcript id | gnl|cribi|Naga_100004g53.9160.mrna |
| Orig protein id | gnl|cribi|Naga_100004g53.9160 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:343880..345846 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2420 ID=rna2420|Name=rna2420|organism=Nannochloropsis gaditana|type=mRNA|length=3445bp
CACCAGCTGAAGGGTTGTTCAGGTCTTACGGCCCCACGATTTCCCCGTCT
TCCCGCCGGCCGGAGAAGGAGCGGGCCAAATAATTGAGGAAAGAAGTGAC
TCGAAAATATATGGTAACGCCGAGCGATTCCAGCATCATGCTGAGCATCA
CGATTAAAACGCTGCAGTTGGGTGATTTTCAGCTGCAAGTACCCGCTGAG
TCTTCTGTGTCAGCGCTTAAAGTCCAAGTCAAGGACTGCACCCAAATTCC
TGAAGAGAGGCAACGGCTGATCTATAGAGGTCGCGTTTTGCAGGACGGGG
AGCACCTCAGCACGTATAATGTCGAGGCCGGGCACACTATTCATTGTGTC
GCTCGCCCAGCCGGCGTGCCTGTCTCTTCCTCTCAGCCTCCAGTCCCACG
CACAGGGCTAGCCACCGGCACAGCACCTGGCGGTGCTTATCGCCGTATTT
TGATGGGTGGTCCTCACGTCTTTGGGGGGCGAGGGGGAAGTCTAGCGGCG
GGAATGGCGGCGGCAGCCGCGTCGGCGGGTGTGCTAGCTCCCGTTCCTGG
AGGGGCCCACCGGGAGGCCGACGTCAATCCGCAGAGTCTCGAGCACGTTC
GTCAAGGGCTCATGACCATGTATTCTCTGTTGTCAGGGATGCAAGCTCCG
ACTGCCATGGTGCAGGGGAGCGCAGGAGAAGGGTCTGGGCAGACGGCTTC
AATGACCCGAGGGCGGGCGCGGGCGCTGCAGACGGACGAAAGAAGCCTGG
CGCTTGAAATGGGCCACGCTGGAGAGCGGCGTCGTTGGTATCCAGGGCAG
TACGTCGACGTCAAAGACACGGTTCACCAGTGGCTGGAAGCTCAGGTCCT
GTCCGTGGACGAGGAACGGCGAACCTGCCGCGTCACCTACTTGGGATGGC
CGCGTCGCTGGGATGAGACGCTGAGCTGGAGCAGCCCTCGAATCGCCCCT
TTTCGCACGCGAACGACGCACAACCTGCAGGCGCCGTTTTTGTCACCAAC
ACCGCTTGCTGCCCCGCGCCTGCCCCTGCCCGTGCGGGGACGGGATGATC
TCCGACGGGTCTTGCCCGAAGTTCTCCTGATGCTTCGCAGGCTTGAAGCA
TATTTTGTGCCTTTGGTGGAGAACATGGAGGAAGAGGCGGTGGCGGAGGG
TTTGGACGAGGAGGAGCAGAAGGAGGGGGAGGAGGAGAAGAACGAGGAAG
GGAGCGGGGGTGTCGAGGGGGGGGGGAATCTCTCGCCCTGGCGGGCGGAG
CAGCTCCGCGAAGAGCGCCTGCAGGGCTCGCGAGGGAACCGACGGAGCCG
TAAAGGACACCAGCAACTGGAAAGATCTCGCGCGGCCCGTCGCCGGCAAG
CGGTAGTCTTAGCGCGGGACACAGCCCCCCTGCTGGACCGGTTTGGGCGC
TTGCTGGCGGATCTGGCCCCGCACGTGGCGACGCTGTGGGAGACCGCAGA
GGAGACGAGCGTGCCTGTGGATGGCATGACCTCGGAGACGGACGGCATGG
AGGGGGCAGTAACGGCGGGGGATGGAGAGGATCTGACTTCCAACCCGGGC
ATCGCAAGGCCGGGGCGGGTGCCTGTTGAACGAGGACGCGGACGACGTGG
ACGAGATCGAGGGAGGGAGGGAAGTGGGCGGAGGAAGGAGAGGGAGCGCG
AAAATGCATTGGGAACGGCTGGCATCGAGGAGGAAGGGAGGGCGGGAAGT
GTTGTACAGAATTCCGCGGAAATGCCCCTTTCCCCGACCCCCCTCGCGCA
TCTCCCCATGCTTCGCAGCCGTGCGTCAGCATTGCAGGATGAGGAGACAC
AAATAGCAGGGGCTGGGGCCGATGACGGTAGAGGCGAAGGGCGTGACGGA
AGCCACGGTCGGCGTGTCCGGAGTCGCCTGGATTTCGGGAGCAGCAGCGA
CAGCAGTAGGGTTACCAGCCTTGCGATTGAGAGCAGCAGCAGCAGCCACG
CTGTGGAAAGTGACAGTCGAGGTGGGCGGCGTAGCGCTGGCGGAAGCAGG
GGCAGGAGTCGGCGGCCCCCCACGGCGGGAAGCACCTCTCTCATGGTCCG
CCCACGCCCTCGGTCTCGTGATCGATCGCCTTCGCCCGAGACAGCCTTGC
GTTTGTTGGTGGCCACGGAGAGTCTCGCGTCTCGGAGTGCTTCATTGAAC
GCAGGTGCAGTCGGGGATGGAAGTGGCCGCGGCGGTGGGTTGACGGGGGT
GGGCGAGATTCACATTCATGCGTTCGTGACCCCGATGGGCGGATCAGTGG
GGAGATTCGGGGGGGAGGGGGGGGGAGGGGACAGGAACAGACCCAGTAAC
ACGGACGTGACGGTGGTAGAACAGAATAGAGGGGTGCTTTCCTCGTCTTC
GGCGACTTCAGGGAGGCCGGGGCGTGAGCAAGATCGTCAGGAGAGCGGCG
CAGGGCGAGGGGATGGAGGAGGGGCGGGAGGACGAGTCCTGGACGTGAAT
TCGTGGAGCTCGGCCCTGCATCGACACCAACAGCAGCAGCAACAGCAGCA
GATCCAGCAATTTTTCCAGCAGCAGCACCAGCCACAGCTACCACAACAAA
TACAACAATCATCATCGCCACAACAACCACAAGAGCAGGAGCAAGAGCAA
GACATTGCGCGGTCATCAAACGTATTAAGCGCTTCTGCGGGTCATAACTC
GGGCAGGCGCGGTGTCTCTATTTTCAGTGGATTGGGTGGCGGTCTGGTCG
CGCCCCCCTCCTTGTTGCCCATCAGCACTGGAAGCAGTTCTGGTCACTTG
AGAAGTGCTGCTTCTATTCGGGCGAGGAATGACAGTGGTGGCACCACCGG
TCAAGCTCGGATTGATCTGGAAGACTCAAGAGAAGGAGGTGGACAGAGTC
ACAGTCGTACCGGGGCAATCAGCCCGCTGTCCTCTTTTATTCCGTTTTTA
CGGCGTTTCTCTCGGTATGGATGATACAACTAAGTGGGAAATAAGGGAAA
TAGTTAGCGCGCTGTGGAACGTGACGAGTAGTATCATCATTGTTAGGCAA
GAATTCGAAAGTAGGTTTTGACGATTGAAAAGGCTACATATCATAGACCG
CAAGGAAGTCGCAAGGTCAGCTGTATAACGTGGTCGAGGGTGTGAAGATG
AGGCAAAATATGGGAAAGAGACATTGTAGTCAAATTCTCTTGTGGTGGCC
AAGTGTATCTTGCGATCTGTTGGACACACAACGTCTGGATCCAATAAGTA
ACATAAGCATCGACAACCTGTCCTCGCGAACAAAAATAGGTCACAACAAA
ACTCAGGCGAAGAATGCAACAAAATGCAATGAGGCAGCGGAAGAAATGGT
GATGGTGAAAAGTAAAGGTGACAGCAAGCGTCCTAATTGTGTAGTCATTT
GTTAAAGACAAAGAAGTAGAAATGGAACATAACATCGAATAAAGAAAGAA
TAAGGTAAAAAGGAAATATTTGAAAATAATCACTTGCATTCATGG back to topprotein sequence of rna2420 >rna2420-protein ID=rna2420-protein|Name=rna2420|organism=Nannochloropsis gaditana|type=polypeptide|length=470bp
MIEAYQGAFMEEDGTTEDSTAGLRSNAAGPTFGNSRSNSTTKHGLTCNII
CENEEEEEGDEQLPPRRTDLPFHSSHDEYVVKCSRRLLYVFYGCGTIFAA
IILWQIISQHKQRHVIAWSVGAIFVGIAVPFSLHDIHMHTMHYVNPKLQK
YYIRILWMVPIYAIESWLALRFRGQKLFLETAREAYEAYVIYNFYMLLLH
YLGGGQGVRDILKAKSDAGDKTVRLLFPFCCFRWKRSGQFINRCTVGVIQ
YVIIRFFLAFITCLVEYMLDHGLGQREALEQTVFAILIIINVSQVWAVYC
LVAFYHEFHYELRAINPFWKFVVVKMVVFLSFWQGLLFSGMAREGMLRPY
MDYSKQDIASGIQNLLICIEMAAISVAHKYVFSYKDMEIIVEPNKMKPHP
SWAAWIDILPWDVISDFREQVFNGFGLRRKMQKKNRSPKSGVGAVTSEVS
TLTVMNTHVVENRSTLAAVV back to topmRNA from alignment at CM002459.1:343880..345846+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2420 ID=rna2420|Name=rna2420|organism=Nannochloropsis gaditana|type=mRNA|length=1967bp|location=Sequence derived from alignment at CM002459.1:343880..345846+ (Nannochloropsis gaditana)
TACCCCATTTGGGCACTATGCATATCCACAGTGTAGCCACTGCGTCTCAC
CTGAGTATCCTGATCGCGTTCTGATTCATCTAATGCAAGACATTACCAGT
GCAAAAGACGAGTGTACAATTATTTTATTTTAGCGTGCCTTACATACTCT
CATTTTAAATGATAGAGGCGTACCAGGGCGCAttcatggaagaggacgga
acGACAGAAGACTCCACAGCGGGCTTGCGGAGCAATGCAGCGGGTCCAAC
ATTCGGCAACagccgcagcaacagcacGACTAAACATGGTCTCACATGTA
ATATTATATGCGagaatgaagaggaagaggaaggcgatgaaCAGCTGCCA
CCACGCCGCACTgatcttcccttccattcctcccatgATGAATACGTCGT
CAAATGCTCTCGACGGCTTCTTTACGTGTTTTATGGATGCGGAACCATCT
TTGCCGCCATCATTTTATGGCAAATCATATCGCAACATAAGCAAAGACAC
GTAATAGCCTGGAGTGTGGGTGCTATATTCGTAGGAATTGCTGTCCCATT
CTCATTGCACGACATTCACATGCATACCATGCACGTAAGTACTCAAGTCA
TGCAACAGTAGGCTTTACAAACTCAGTAACAATAAGGGGTCATGATGTAC
ACTTTTTTATTCGAGATCTGAGATTTGTTCTATTCCTTTTTCGATTCAAC
AGTACGTAAACCCCAAATTACAAAAGTACTACATTCGGATCCTGTGGATG
GTACCCATCTATGCCATCGAATCCTGGCTCGCACTGAGATTCCGAGGACA
AAAGCTTTTTCTTGAAACGGCACGCGAGGCCTACGAGGCATATGTCATCT
ATAATTTCTATATGCTCCTGCTGCATTACCTCGGCGGAGGGCAAGGTGTG
CGAGACATTCTAAAAGCGAAGTCGGATGCGGGCGATAAGACCGTGCGATT
GTTGTTCCCATTTTGCTGTTTCAGGTGGAAACGTAGTGGCCAATTTATCA
ATCGCTGCACTGTGGGCGTCATTCAGTACGTCATAATCCGGTTCTTCCTT
GCTTTCATCACATGTCTGGTGGAATACATGCTGGATCATGGTCTTGGGCA
AAGAGAGGCGTTAGAACAGACGGTATTCGCCATCCTGATCATCATTAATG
TATCTCAAGTATGGGCCGTATACTGTCTAGTTGCATTCTACCATGAATTT
CATTACGAGCTAAGAGCGATCAACCCTTTTTGGAAGTTTGTTGTTGTGAA
AATGGTAGTCTTCCTTTCATTCTGGCAAGGCCTGCTTTTCAGTGGCATGG
CTAGAGAGGGAATGTTAAGGCCCTACATGGACTATAGCAAACAAGACATA
GCAAGTGGTATCCAGAATCTGCTGATTTGCATAGAAATGGCGGCGATATC
CGTGGCGCATAAGTATGTATTCTCTTATAAGGATATGGAGATCATTGTCG
GTAAGTAAGGAGACAGTTAGAGAAGCTCACAAGGAGTGCGGATAAATGAC
ACTAGTTTCCCCGAGTACGCTACTGACAACACACGCATCCGTTTCCAACC
TCACAGAGCCCAACAAAATGAAGCCTCACCCTTCCTGGGCGGCCTGGATA
GACATATTACCGTGGGATGTTATAAGTGATTTCCGAGAACAGGTTTTCAA
TGGGTTTGGCCTTCGACGCAAGATGCAAAAGAAAAATCGAAGTCCCAAAA
GTGGTGTGGGAGCTGTAACATCCGAGGTGTCGACTTTGACGGTCATGAAT
ACTCATGTTGTTGAAAATAGGTCAAcacttgccgccgtggtttAAAAAAG
GGGCCGCGCATATGAAgccagaaggagaaagaaaggagtcAAGCCACTGG
ACCGTGAAGCAAGTACAGTGAAAATATGCCGCTTGCAACGTCAAATCAAG
TTGTGTACATTTaaattttgaaaagaaagatTAAACATTCAACGATGAGA
AGATAGATAAATCTTGC back to topCoding sequence (CDS) from alignment at CM002459.1:343880..345846+ >rna2420 ID=rna2420|Name=rna2420|organism=Nannochloropsis gaditana|type=CDS|length=4239bp|location=Sequence derived from alignment at CM002459.1:343880..345846+ (Nannochloropsis gaditana)
ATGATAGAGGCGTACCAGGGCGCAttcatggaagaggacggaacGACAGA
AGACTCCACAGCGGGCTTGCGGAGCAATGCAGCGGGTCCAACATTCGGCA
ACagccgcagcaacagcacGACTAAACATGGTCTCACATGTAATATTATA
TGCGagaatgaagaggaagaggaaggcgatgaaCAGCTGCCACCACGCCG
CACTgatcttcccttccattcctcccatgATGAATACGTCGTCAAATGCT
CTCGACGGCTTCTTTACGTGTTTTATGGATGCGGAACCATCTTTGCCGCC
ATCATTTTATGGCAAATCATATCGCAACATAAGCAAAGACACGTAATAGC
CTGGAGTGTGGGTGCTATATTCGTAGGAATTGCTGTCCCATTCTCATTGC
ACGACATTCACATGCATACCATGCACTACGTAAACCCCAAATTACAAAAG
TACTACATTCGGATCCTGTGGATGGTACCCATCTATGCCATCGAATCCTG
GCTCGCACTGAGATTCCGAGGACAAAAGCTTTTTCTTGAAACGGCACGCG
AGGCCTACGAGGCATATGTCATCTATAATTTCTATATGCTCCTGCTGCAT
TACCTCGGCGGAGGGCAAGGTGTGCGAGACATTCTAAAAGCGAAGTCGGA
TGCGGGCGATAAGACCGTGCGATTGTTGTTCCCATTTTGCTGTTTCAGGT
GGAAACGTAGTGGCCAATTTATCAATCGCTGCACTGTGGGCGTCATTCAG
TACGTCATAATCCGGTTCTTCCTTGCTTTCATCACATGTCTGGTGGAATA
CATGCTGGATCATGGTCTTGGGCAAAGAGAGGCGTTAGAACAGACGGTAT
TCGCCATCCTGATCATCATTAATGTATCTCAAGTATGGGCCGTATACTGT
CTAGTTGCATTCTACCATGAATTTCATTACGAGCTAAGAGCGATCAACCC
TTTTTGGAAGTTTGTTGTTGTGAAAATGGTAGTCTTCCTTTCATTCTGGC
AAGGCCTGCTTTTCAGTGGCATGGCTAGAGAGGGAATGTTAAGGCCCTAC
ATGGACTATAGCAAACAAGACATAGCAAGTGGTATCCAGAATCTGCTGAT
TTGCATAGAAATGGCGGCGATATCCGTGGCGCATAAGTATGTATTCTCTT
ATAAGGATATGGAGATCATTGTCGAGCCCAACAAAATGAAGCCTCACCCT
TCCTGGGCGGCCTGGATAGACATATTACCGTGGGATGTTATAAGTGATTT
CCGAGAACAGGTTTTCAATGGGTTTGGCCTTCGACGCAAGATGCAAAAGA
AAAATCGAAGTCCCAAAAGTGGTGTGGGAGCTGTAACATCCGAGGTGTCG
ACTTTGACGGTCATGAATACTCATGTTGTTGAAAATAGGTCAAcacttgc
cgccgtggtttAAATGATAGAGGCGTACCAGGGCGCAttcatggaagagg
acggaacGACAGAAGACTCCACAGCGGGCTTGCGGAGCAATGCAGCGGGT
CCAACATTCGGCAACagccgcagcaacagcacGACTAAACATGGTCTCAC
ATGTAATATTATATGCGagaatgaagaggaagaggaaggcgatgaaCAGC
TGCCACCACGCCGCACTgatcttcccttccattcctcccatgATGAATAC
GTCGTCAAATGCTCTCGACGGCTTCTTTACGTGTTTTATGGATGCGGAAC
CATCTTTGCCGCCATCATTTTATGGCAAATCATATCGCAACATAAGCAAA
GACACGTAATAGCCTGGAGTGTGGGTGCTATATTCGTAGGAATTGCTGTC
CCATTCTCATTGCACGACATTCACATGCATACCATGCACTACGTAAACCC
CAAATTACAAAAGTACTACATTCGGATCCTGTGGATGGTACCCATCTATG
CCATCGAATCCTGGCTCGCACTGAGATTCCGAGGACAAAAGCTTTTTCTT
GAAACGGCACGCGAGGCCTACGAGGCATATGTCATCTATAATTTCTATAT
GCTCCTGCTGCATTACCTCGGCGGAGGGCAAGGTGTGCGAGACATTCTAA
AAGCGAAGTCGGATGCGGGCGATAAGACCGTGCGATTGTTGTTCCCATTT
TGCTGTTTCAGGTGGAAACGTAGTGGCCAATTTATCAATCGCTGCACTGT
GGGCGTCATTCAGTACGTCATAATCCGGTTCTTCCTTGCTTTCATCACAT
GTCTGGTGGAATACATGCTGGATCATGGTCTTGGGCAAAGAGAGGCGTTA
GAACAGACGGTATTCGCCATCCTGATCATCATTAATGTATCTCAAGTATG
GGCCGTATACTGTCTAGTTGCATTCTACCATGAATTTCATTACGAGCTAA
GAGCGATCAACCCTTTTTGGAAGTTTGTTGTTGTGAAAATGGTAGTCTTC
CTTTCATTCTGGCAAGGCCTGCTTTTCAGTGGCATGGCTAGAGAGGGAAT
GTTAAGGCCCTACATGGACTATAGCAAACAAGACATAGCAAGTGGTATCC
AGAATCTGCTGATTTGCATAGAAATGGCGGCGATATCCGTGGCGCATAAG
TATGTATTCTCTTATAAGGATATGGAGATCATTGTCGAGCCCAACAAAAT
GAAGCCTCACCCTTCCTGGGCGGCCTGGATAGACATATTACCGTGGGATG
TTATAAGTGATTTCCGAGAACAGGTTTTCAATGGGTTTGGCCTTCGACGC
AAGATGCAAAAGAAAAATCGAAGTCCCAAAAGTGGTGTGGGAGCTGTAAC
ATCCGAGGTGTCGACTTTGACGGTCATGAATACTCATGTTGTTGAAAATA
GGTCAAcacttgccgccgtggtttAAATGATAGAGGCGTACCAGGGCGCA
ttcatggaagaggacggaacGACAGAAGACTCCACAGCGGGCTTGCGGAG
CAATGCAGCGGGTCCAACATTCGGCAACagccgcagcaacagcacGACTA
AACATGGTCTCACATGTAATATTATATGCGagaatgaagaggaagaggaa
ggcgatgaaCAGCTGCCACCACGCCGCACTgatcttcccttccattcctc
ccatgATGAATACGTCGTCAAATGCTCTCGACGGCTTCTTTACGTGTTTT
ATGGATGCGGAACCATCTTTGCCGCCATCATTTTATGGCAAATCATATCG
CAACATAAGCAAAGACACGTAATAGCCTGGAGTGTGGGTGCTATATTCGT
AGGAATTGCTGTCCCATTCTCATTGCACGACATTCACATGCATACCATGC
ACTACGTAAACCCCAAATTACAAAAGTACTACATTCGGATCCTGTGGATG
GTACCCATCTATGCCATCGAATCCTGGCTCGCACTGAGATTCCGAGGACA
AAAGCTTTTTCTTGAAACGGCACGCGAGGCCTACGAGGCATATGTCATCT
ATAATTTCTATATGCTCCTGCTGCATTACCTCGGCGGAGGGCAAGGTGTG
CGAGACATTCTAAAAGCGAAGTCGGATGCGGGCGATAAGACCGTGCGATT
GTTGTTCCCATTTTGCTGTTTCAGGTGGAAACGTAGTGGCCAATTTATCA
ATCGCTGCACTGTGGGCGTCATTCAGTACGTCATAATCCGGTTCTTCCTT
GCTTTCATCACATGTCTGGTGGAATACATGCTGGATCATGGTCTTGGGCA
AAGAGAGGCGTTAGAACAGACGGTATTCGCCATCCTGATCATCATTAATG
TATCTCAAGTATGGGCCGTATACTGTCTAGTTGCATTCTACCATGAATTT
CATTACGAGCTAAGAGCGATCAACCCTTTTTGGAAGTTTGTTGTTGTGAA
AATGGTAGTCTTCCTTTCATTCTGGCAAGGCCTGCTTTTCAGTGGCATGG
CTAGAGAGGGAATGTTAAGGCCCTACATGGACTATAGCAAACAAGACATA
GCAAGTGGTATCCAGAATCTGCTGATTTGCATAGAAATGGCGGCGATATC
CGTGGCGCATAAGTATGTATTCTCTTATAAGGATATGGAGATCATTGTCG
AGCCCAACAAAATGAAGCCTCACCCTTCCTGGGCGGCCTGGATAGACATA
TTACCGTGGGATGTTATAAGTGATTTCCGAGAACAGGTTTTCAATGGGTT
TGGCCTTCGACGCAAGATGCAAAAGAAAAATCGAAGTCCCAAAAGTGGTG
TGGGAGCTGTAACATCCGAGGTGTCGACTTTGACGGTCATGAATACTCAT
GTTGTTGAAAATAGGTCAAcacttgccgccgtggtttAA back to top
|