rna2416, rna2416 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2416
Unique Name	rna2416
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1878
Alignment location	CM002459.1:331949..334415 -

Link to JBrowse

Properties


Property Name	Value
Product	gtp cyclohydrolase i
Orig transcript id	gnl\|cribi\|Naga_100004g50.9122.mrna
Orig protein id	gnl\|cribi\|Naga_100004g50.9122
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:331949..334415 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g50	gene2310	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2416	rna2416-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28191.1	cds2408	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:331949..334415-
coding sequence from alignment at CM002459.1:331949..334415-

mRNA sequence

>rna2416 ID=rna2416|Name=rna2416|organism=Nannochloropsis gaditana|type=mRNA|length=1878bp
ATGCCGACCATTTCTTTGGTGCGTGATGACCTTTTCAATGCTTTAGGCAA
GAGCTACACCGACGACGAGTTTCAAGATGTATGTTTCGCGTTTGGTATCG
AACTTGACGAAATTACCACCGAGGGGGAATTGGCGTCGAAAGACGCAGGC
AGCAAAGGGAAATGTGGGCCGGACGGTGGCGCCGTGGTGTACAAAGTCGA
TGTTCCGGCAAATCGGTACGACATCCTGTGCATGGAAGGCTTGACTAGAG
CGCTGCGCATTTTTTTGGAATTGGACAAAGCCCCGTCATACCGGAAGGTC
GAGCCAACGGATAATGGGGGAACCCGCACGGTCATGTCCGTAGAGGCCTC
GACGGCGTCCGTTCGCCCCTTCGTCGCGTGCGCCATCTTGCGAGACATGA
CATTTGATCCGTTGGTGTACAAAAGTTTCATCGATTTGCAAGAGCACTTG
CACAGGAACATCTGTCGAAGGCGAACTTTGGTGGCAATAGGGACGCATGA
CCTTGATACGCTGCGGGGCCCTTTTCGTTACACGGCGGCGGACCCGGCCT
CCATCCAATTCAGCCCGCTGACATCCGACGACGGGAGAGTATTCAATGCG
AAAGAGCTTTTGGATTTCTACAGGACCGATGAGTCGGCCAAGCATCTGAG
TCCGTACACGGACATTATCTATGAGGCACCTCGGTACCCAGTGCTGTATG
ACAGCCGAGGTACCGTTCTCTCTTTGCCGCCGGTCATCAACGGCCGTCAC
TCCCGCATTACCCTGCAGACCCGCAACGTTTTTATTGAATGCACGGCCAC
TGACAAGACCAAGGCCAATATTGTCCTTGACACGGTAGTGACCATGTTTT
CGCAGCATTGCGCGCGCCCCTTCACGGTCGAGCCTGTTGATGTTGTCTAC
GAAGGACCAGAGCTGAGCGTGGAGACGACGCCACTCCTCTCAACCCGCAA
AGTTGCCGCAAAAATGTCCGAAATTGAAGGCTTGGTTGGGAGAGACCTCG
GCCCCGAATTGGTCTGTCAGCTGTGCAACAAAATGCAGTTGGGTCCGGCG
TCCTACCATGCCGAGACGGACACGGTGGTGGTGACCGTGCCGCCCACACG
ATCGGACGTCCTTCACGCTGTGGATGTCATCGAAGACGTGGCTATCGCCT
TCGGATACAATAATTTGCCCATCAAGGTCCCCGGTACCCTCACAGTCGGA
GCCCCTCTGCCGATAAACGCTTTCTCAGATCTTCTGCGCGACGAGATTGC
CCGGGCAGGGTACTTGGAGGTGTTGACCCATGGCTTGTGCTCCCGCGCCG
AAAACTTTGCCAAGCTTCGCCGGCCAGAAACAAAAGCGGTGTCGCTTTCC
AACCCTGCAAACGAGGAGTACGAGATAGTGAGGACGACACTCCTGCCTGG
ACTCTTGAAAGTGCTTCAGCATAATAGGGCCGCTCAGGTAAAAGATGGCC
TTCGTTTCTTCGAGATCTCTGATGTGGTATTACGGGACGACCACACCGAT
GTAGGTGCCAAGAACATCCGGCGTTTGGTGGCGTCTTCTACGTCCATGGT
AGCGGGATTCGAATCGATTCACGGCTTGGTTGATAGAGTGATGTTGCTAG
TCCAAATAGGTCCCACCGAAGCGTACGCGGGGAACAGCATGCGAGGTGAA
GAACGTATGGCTGTTTTGAAGGACAAAATACAGTACTACATCGTCCCTAG
TGACGATCCTGCCTATTTCCCGGGGAGATGTGCTGATGTAATACTGGTCG
AGGACGGTAAGAAGAGCAAGCCACTGAAAGTAGGCACGTTTGGAGTGCTG
CATCCGGAGGTACTGAAGGCATACGACATCCCATTTCCTACTTCAATGCT
AGAAATTGATCTAGAGCCACTAATATGA

protein sequence of rna2416

>rna2416-protein ID=rna2416-protein|Name=rna2416|organism=Nannochloropsis gaditana|type=polypeptide|length=346bp
MAFHQRCTVSHGNGILKKTSNNSTSRKDENVPCHATPATCGNGRFPFQTA
AAAAAAAAAAAVARLPLSEAGSDSLLLNKSSGETARGQQQEHYRHNGICC
RGHDEDEDEEESVAEGGSGQRNGSVVHGENKLTAHGKHAQRAEGDEDSGG
SSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQ
TVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSK
VLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHM
CMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLIKSGNGGYGR

mRNA from alignment at CM002459.1:331949..334415-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2416 ID=rna2416|Name=rna2416|organism=Nannochloropsis gaditana|type=mRNA|length=2467bp|location=Sequence derived from alignment at CM002459.1:331949..334415- (Nannochloropsis gaditana)
TGCAGGCCTTCGTTGCTGCGCTACGTTTACCTCATCGCCTCGTTTTCTGC
CGTACAGGAGCACTTGGTCCCCATAGCAAGAACTCGAAAGCCGCGGAGCT
AGATTGGCGCCCGGAAAGGTGATTGAAGGCTGTAATTTTGGTATAAAATT
CTGCCCTCAAGTGTCCCGCTAGGCGTAACGATTGGAGGATACCAAGGCCT
CCATACATCGGCGTCACTAGCCTGCCCATCAAGTCACTGGTTCATCAGTA
CCTTCGCAGTAAATACATGGCTTTACCAGTCCACGATGTTGAAGATCCAA
CGCCTGTCACGGTACGTTTGGTATAGCTCCAAAATTGTGTGGTTCGTGTA
AGTACATGAGATGGCAAGGCTCGCTTTCAGTCGCCGGGCCGGTGGATCCT
GTAACATTTTGATTAAGTCAACTGTATAATGTTTCAATACCCGTGTCATG
GCAATATGTCTTCCAGTTACCAGCAAATAGCTTAGTTTAGCATTCGTCGT
GCCCAGCGTTCCGAAACGGGCTCCCAGTGTGGTCATCTGACCCGACAAAA
TCCCGTACCTGTCATATTGGCACCATCAAAAACAACTTGATGAGCAATAT
GTTCAGTGCCAAGACGCAGCAGCATTGAGAAGTATTCTTACTTATTCTGT
CTCTTTTGTCCCCTTGCCCTGCAACACCGGAATGGCAGGAGTCCTCCTCT
TCCTCCGAGACAGGCTCTGAATCTGTAGGCTCCTTGGATGAGGAAGCGAC
GGACATGGCCTTCCATCAGAGATGCACAGTCTCTCACGGAAATGGGATCT
TGAAAAAGACTTCCAATAATTCCACCTCTCGCAAAGACGAAAATGTGCCG
TGCCATGCCACGCCCGCCACCTGCGGGAATGGCCGCTTCCCTTTTCAGAC
AGCCGCTGCTGCAGCCGCCGCCGCCGCCGCCGCCGCAGTCGCACGTCTAC
CGTTATCAGAAGCAGGCAGTGATAGCTTGCTTTTAAACAAGAGCTCCGGA
GAGACGGCGCGAGGGCAACAACAGGAGCATTACCGACACAACGGCATATG
TTGTCGTGGGCACGATGAGGACGAGGATGAGGAGGAGTCTGTGGCAGAGG
GAGGCAGCGGACAGAGAAATGGAAGCGTGGTACATGGGGAAAACAAGCTG
ACAGCCCATGGAAAGCATGCACAGCGTGCAGAAGGCGACGAGGACAGTGG
AGGTAGTTCAGAGGAGGAGAGGCTACGGCGCATGTCGGCAGCGGTTCGGA
CTTTGTTAGAATGCGTGGGAGAGGATCCCGACAGAGAAGGATTGCGCGCC
ACGCCGATGCGGATGGCCAAAGCCCTGCTGTACTGCACCAAGGGCTACGA
CCAAACGGTGGCTGGGGTGGTGGGCGGCGCGGTCTTCGAGGAGGACCACT
CGGAGATGGTGGTCGTAAAAGACATCAACGTCTTCAGTATGTGCGAGCAT
CACATGGTCCCGTTCTTAGGGAAAGTTCACATCGGGTACATTCCTCGCTC
CAAGGTGCTGGGCTTAAGCAAGCTGGCTCGAATCGCGGAAATGTACGCGA
GGCGACTCCAGATCCAGGAACGACTTACGAAGCAGATTGCTCAAGCCATC
AACGAGGCGATACAACCCTTGGGGGTGGCTGTTGTTATAGAGGCGACGTG
AGTGAAAGAAAGAATGTTTGTATGTGAGGAGGATGGAAAGCGGGGAACAT
GAGTTGGTGATGAAAGGGATGCATCAAATTTGACATCAATCTAAGCCTTG
CCCAATTGCCCTTGCGCTTTCTCATTCACTCGACAGACATATGTGCATGG
TCATGCGTGGGGTAGAGAAGCCTGGGTCGGCGACCATTACTTCCTCAGTG
ACGGGCGCCTTCAAGAGCAACGCTGCCACCAGGAGCGAGTTCTTCTCGCT
TATCAAGTCGGGAAACGGTGGCTACGGACGATGATTAAGTGCGTTAGAAA
TGAATTGGGAAATGGCGCTGAATGTGCCATTTGAAACTCAGAGTAGTTGA
GGGAGGTGGAAATAAGTTGGAGAAGAGATCTAGTATTCTTGATTATTAAT
TGCGTAAGCTTCTCACGATCCGGCCAACCAGAGAATGGCCTAGGACGAGG
AAACTGTAACATCAAATGGGAAAAATTATTAATTTCGTTAGCGTGACAGT
AGGGTTAGTCAGAGTAACACTGTTGTGTCCAAGAAGAGCGTGAACACGGA
GTAGAAGGACAGCTTGTGTAGAATGCGTGAGAATGGAAGGCGGTAATCGC
TGCATGAAAATTCACCATCGCGCAACGCAGATGACGTACGCCCCAAAAAT
TGCTTGAGTAGCATTTGATTTATCGTTTCTGTCTGTGACAGTCAACGTTT
TGACAGGATGAGTGCAAAGCTACCAGTAGAAAAGGAGGGGAGGAAACAGG
CGTTTTCAGGAAAAGAAACGCATCATAAGTAGTACAGATTGTGCAAAGAA
GACTTACCATCCAACGA

Coding sequence (CDS) from alignment at CM002459.1:331949..334415-

>rna2416 ID=rna2416|Name=rna2416|organism=Nannochloropsis gaditana|type=CDS|length=2082bp|location=Sequence derived from alignment at CM002459.1:331949..334415- (Nannochloropsis gaditana)
ACATATGTGCATGGTCATGCGTGGGGTAGAGAAGCCTGGGTCGGCGACCA
TTACTTCCTCAGTGACGGGCGCCTTCAAGAGCAACGCTGCCACCAGGAGC
GAGTTCTTCTCGCTTATCAAGTCGGGAAACGGTGGCTACGGACGATGAAT
GGCCTTCCATCAGAGATGCACAGTCTCTCACGGAAATGGGATCTTGAAAA
AGACTTCCAATAATTCCACCTCTCGCAAAGACGAAAATGTGCCGTGCCAT
GCCACGCCCGCCACCTGCGGGAATGGCCGCTTCCCTTTTCAGACAGCCGC
TGCTGCAGCCGCCGCCGCCGCCGCCGCCGCAGTCGCACGTCTACCGTTAT
CAGAAGCAGGCAGTGATAGCTTGCTTTTAAACAAGAGCTCCGGAGAGACG
GCGCGAGGGCAACAACAGGAGCATTACCGACACAACGGCATATGTTGTCG
TGGGCACGATGAGGACGAGGATGAGGAGGAGTCTGTGGCAGAGGGAGGCA
GCGGACAGAGAAATGGAAGCGTGGTACATGGGGAAAACAAGCTGACAGCC
CATGGAAAGCATGCACAGCGTGCAGAAGGCGACGAGGACAGTGGAGGTAG
TTCAGAGGAGGAGAGGCTACGGCGCATGTCGGCAGCGGTTCGGACTTTGT
TAGAATGCGTGGGAGAGGATCCCGACAGAGAAGGATTGCGCGCCACGCCG
ATGCGGATGGCCAAAGCCCTGCTGTACTGCACCAAGGGCTACGACCAAAC
GGTGGCTGGGGTGGTGGGCGGCGCGGTCTTCGAGGAGGACCACTCGGAGA
TGGTGGTCGTAAAAGACATCAACGTCTTCAGTATGTGCGAGCATCACATG
GTCCCGTTCTTAGGGAAAGTTCACATCGGGTACATTCCTCGCTCCAAGGT
GCTGGGCTTAAGCAAGCTGGCTCGAATCGCGGAAATGTACGCGAGGCGAC
TCCAGATCCAGGAACGACTTACGAAGCAGATTGCTCAAGCCATCAACGAG
GCGATACAACCCTTGGGGGTGGCTGTTGTTATAGAGGCGACACATATGTG
CATGGTCATGCGTGGGGTAGAGAAGCCTGGGTCGGCGACCATTACTTCCT
CAGTGACGGGCGCCTTCAAGAGCAACGCTGCCACCAGGAGCGAGTTCTTC
TCGCTTATCAAGTCGGGAAACGGTGGCTACGGACGATGAATGGCCTTCCA
TCAGAGATGCACAGTCTCTCACGGAAATGGGATCTTGAAAAAGACTTCCA
ATAATTCCACCTCTCGCAAAGACGAAAATGTGCCGTGCCATGCCACGCCC
GCCACCTGCGGGAATGGCCGCTTCCCTTTTCAGACAGCCGCTGCTGCAGC
CGCCGCCGCCGCCGCCGCCGCAGTCGCACGTCTACCGTTATCAGAAGCAG
GCAGTGATAGCTTGCTTTTAAACAAGAGCTCCGGAGAGACGGCGCGAGGG
CAACAACAGGAGCATTACCGACACAACGGCATATGTTGTCGTGGGCACGA
TGAGGACGAGGATGAGGAGGAGTCTGTGGCAGAGGGAGGCAGCGGACAGA
GAAATGGAAGCGTGGTACATGGGGAAAACAAGCTGACAGCCCATGGAAAG
CATGCACAGCGTGCAGAAGGCGACGAGGACAGTGGAGGTAGTTCAGAGGA
GGAGAGGCTACGGCGCATGTCGGCAGCGGTTCGGACTTTGTTAGAATGCG
TGGGAGAGGATCCCGACAGAGAAGGATTGCGCGCCACGCCGATGCGGATG
GCCAAAGCCCTGCTGTACTGCACCAAGGGCTACGACCAAACGGTGGCTGG
GGTGGTGGGCGGCGCGGTCTTCGAGGAGGACCACTCGGAGATGGTGGTCG
TAAAAGACATCAACGTCTTCAGTATGTGCGAGCATCACATGGTCCCGTTC
TTAGGGAAAGTTCACATCGGGTACATTCCTCGCTCCAAGGTGCTGGGCTT
AAGCAAGCTGGCTCGAATCGCGGAAATGTACGCGAGGCGACTCCAGATCC
AGGAACGACTTACGAAGCAGATTGCTCAAGCCATCAACGAGGCGATACAA
CCCTTGGGGGTGGCTGTTGTTATAGAGGCGAC

Synonyms

Publications