EWM28191.1, cds2408 (CDS) Nannochloropsis gaditana

Overview
NameEWM28191.1
Unique Namecds2408
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:332769..333661 -
Alignment locationCM002459.1:332482..332629 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28191.1
Productgtp cyclohydrolase i
Orig transcript idgnl|cribi|Naga_100004g50.9122.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:332769..333661 -
CM002459.1supercontigCM002459.1:332482..332629 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003934GTP cyclohydrolase I activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0046654tetrahydrofolate biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR018234GTP_CycHdrlase_I_CS
IPR020602GTP_CycHdrlase_I_dom
IPR001474GTP_CycHdrlase_I
Homology
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|585110536|gb|EWM28191.1| (gtp cyclohydrolase i [Nannochloropsis gaditana])

HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0
Query:    1 MAFHQRCTVSHGNGILKKTSNNSTSRKDENVPCHATPATCGNGRFPFQTAAAAAAAAAAAAVARLPLSEAGSDSLLLNKSSGETARGQQQEHYRHNGICCRGHDEDEDEEESVAEGGSGQRNGSVVHGENKLTAHGKHAQRAEGDEDSGGSSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLIKSGNGGYGR 346
            MAFHQRCTVSHGNGILKKTSNNSTSRKDENVPCHATPATCGNGRFPFQTAAAAAAAAAAAAVARLPLSEAGSDSLLLNKSSGETARGQQQEHYRHNGICCRGHDEDEDEEESVAEGGSGQRNGSVVHGENKLTAHGKHAQRAEGDEDSGGSSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLIKSGNGGYGR
Sbjct:    1 MAFHQRCTVSHGNGILKKTSNNSTSRKDENVPCHATPATCGNGRFPFQTAAAAAAAAAAAAVARLPLSEAGSDSLLLNKSSGETARGQQQEHYRHNGICCRGHDEDEDEEESVAEGGSGQRNGSVVHGENKLTAHGKHAQRAEGDEDSGGSSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLIKSGNGGYGR 346          
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|695442303|ref|XP_009533421.1| (hypothetical protein PHYSODRAFT_355289 [Phytophthora sojae] >gi|348670855|gb|EGZ10676.1| hypothetical protein PHYSODRAFT_355289 [Phytophthora sojae])

HSP 1 Score: 292.352 bits (747), Expect = 5.152e-95
Identity = 135/187 (72.19%), Postives = 161/187 (86.10%), Query Frame = 0
Query:  153 EEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLIKS 339
            ++++L +M+AAV TLLEC+GEDP REGL  TPMRMAKALLY TKGY Q++A V+  AVFEEDH EMV+V+DI+++SMCEHHMVPF GKVHIGYIP  KVLGLSKLAR++E+++RRLQ+QERLTKQIA AI   I+P GVAVVIEATHMCMVMRGVEK G++T+TSSV G FKS+  TRSEF SLI S
Sbjct:   80 DKQKLDKMAAAVTTLLECIGEDPQREGLLKTPMRMAKALLYNTKGYGQSLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFAGKVHIGYIPNGKVLGLSKLARVSEVFSRRLQVQERLTKQIANAIMGVIEPKGVAVVIEATHMCMVMRGVEKSGASTVTSSVLGVFKSDPRTRSEFMSLIHS 266          
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|1214713609|gb|OWZ24495.1| (GTP cyclohydrolase I [Phytophthora megakarya])

HSP 1 Score: 290.426 bits (742), Expect = 2.140e-94
Identity = 134/185 (72.43%), Postives = 160/185 (86.49%), Query Frame = 0
Query:  153 EEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLI 337
            ++E+L +M+AAV TLLEC+GEDP REGL  TPMRMAKA+LY TKGY Q++A V+  AVFEEDH EMV+V+DI+++SMCEHHMVPF GKVHIGYIP  KVLGLSKLAR++E+++RRLQ+QERLTKQIA AI   I+P GVAVVIEATHMCMVMRGVEK G++T+TSSV G FKS+  TRSEF SLI
Sbjct:   65 DKEKLEKMAAAVTTLLECIGEDPKREGLVKTPMRMAKAMLYNTKGYGQSLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFSRRLQVQERLTKQIANAIMGVIEPKGVAVVIEATHMCMVMRGVEKSGASTVTSSVLGVFKSDPRTRSEFMSLI 249          
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|301107826|ref|XP_002902995.1| (GTP cyclohydrolase I [Phytophthora infestans T30-4] >gi|262098113|gb|EEY56165.1| GTP cyclohydrolase I [Phytophthora infestans T30-4])

HSP 1 Score: 289.271 bits (739), Expect = 4.968e-94
Identity = 134/185 (72.43%), Postives = 160/185 (86.49%), Query Frame = 0
Query:  153 EEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLI 337
            ++E+L +M+AAV TLLEC+GEDP REGL  TPMRMAKALLY TKGY Q+++ V+  AVFEEDH EMV+V+DI+++SMCEHHMVPF GKVHIGYIP  KVLGLSKLAR++E+++RRLQ+QERLTKQIA AI   I+P GVAVVIEATHMCMVMRGVEK G++T+TSSV G FKS+  TRSEF SLI
Sbjct:   59 DKEKLEKMAAAVTTLLECIGEDPQREGLVKTPMRMAKALLYNTKGYGQSLSDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFSRRLQVQERLTKQIANAIMGVIEPKGVAVVIEATHMCMVMRGVEKSGASTVTSSVLGVFKSDPRTRSEFMSLI 243          
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|675178895|ref|XP_008898332.1| (GTP cyclohydrolase I [Phytophthora parasitica INRA-310] >gi|566008687|gb|ETI31598.1| GTP cyclohydrolase I [Phytophthora parasitica P1569] >gi|567946164|gb|ETK71975.1| GTP cyclohydrolase I [Phytophthora parasitica] >gi|567974825|gb|ETL25402.1| GTP cyclohydrolase I [Phytophthora parasitica] >gi|568004305|gb|ETL78629.1| GTP cyclohydrolase I [Phytophthora parasitica] >gi|568034214|gb|ETM31890.1| GTP cyclohydrolase I [Phytophthora parasitica] >gi|568101248|gb|ETN15934.1| GTP cyclohydrolase I [Phytophthora parasitica INRA-310] >gi|570312368|gb|ETO60316.1| GTP cyclohydrolase I [Phytophthora parasitica P1976] >gi|570936155|gb|ETP01412.1| GTP cyclohydrolase I [Phytophthora parasitica CJ01A1] >gi|570966464|gb|ETP29583.1| GTP cyclohydrolase I [Phytophthora parasitica P10297] >gi|970659334|gb|KUF96979.1| hypothetical protein AM588_10006621 [Phytophthora nicotianae] >gi|970664498|gb|KUG01392.1| GTP cyclohydrolase 1 [Phytophthora nicotianae])

HSP 1 Score: 288.886 bits (738), Expect = 6.314e-94
Identity = 134/185 (72.43%), Postives = 159/185 (85.95%), Query Frame = 0
Query:  153 EEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLI 337
            ++E+L +M+AAV TLLEC+GEDP REGL  TPMRMAKALLY TKGY Q++  V+  AVFEEDH EMV+V+DI+++SMCEHHMVPF GKVHIGYIP  KVLGLSKLAR++E+++RRLQ+QERLTKQIA AI   I+P GVAVVIEATHMCMVMRGVEK G++T+TSSV G FKS+  TRSEF SLI
Sbjct:   59 DKEKLEKMAAAVTTLLECIGEDPQREGLVKTPMRMAKALLYNTKGYGQSLTDVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFSRRLQVQERLTKQIANAIMGVIEPKGVAVVIEATHMCMVMRGVEKSGASTVTSSVLGVFKSDPRTRSEFMSLI 243          
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|953488203|emb|CEG48220.1| (gtp cyclohydrolase i [Plasmopara halstedii])

HSP 1 Score: 288.5 bits (737), Expect = 8.291e-94
Identity = 134/185 (72.43%), Postives = 160/185 (86.49%), Query Frame = 0
Query:  153 EEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLI 337
            ++ +L +M+AAV TLLEC+GEDP REGL  TPMRMAKALLY TKGY Q++A V+  AVFEEDH EMV+V+DI+++SMCEHHMVPF GKVHIGYIP  KVLGLSKLAR++E+++RRLQ+QERLTKQIA AI   I+P GVAVVIEATHMCMVMRGVEK G++T+TSSV G FKS++ TRSEF SLI
Sbjct:   59 DKAKLEKMAAAVTTLLECIGEDPHREGLVKTPMRMAKALLYNTKGYSQSLADVLNEAVFEEDHDEMVIVRDIDLYSMCEHHMVPFTGKVHIGYIPNGKVLGLSKLARVSEVFSRRLQVQERLTKQIATAIMGVIEPKGVAVVIEATHMCMVMRGVEKSGASTVTSSVLGVFKSDSRTRSEFMSLI 243          
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|831792276|ref|XP_012759990.1| (hypothetical protein SAMD00019534_036440 [Acytostelium subglobosum LB1] >gi|735994780|dbj|GAM20469.1| hypothetical protein SAMD00019534_036440 [Acytostelium subglobosum LB1])

HSP 1 Score: 288.115 bits (736), Expect = 1.674e-93
Identity = 140/237 (59.07%), Postives = 179/237 (75.53%), Query Frame = 0
Query:  103 HDEDEDEEESVAEGGSGQRNGSVVHGENKLTAHGKHAQRAEGDEDSGGSSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLIKS 339
            H E+E+++E + E GS     SV           K   R     D   +  E+ L +M   V++LLE +GEDP+REGL+ TP+RMAKAL+Y T GY+ +V  ++GGA+F E+H EMVVV+DI++FS+CEHHMVPF GK HIGYIP  KVLGLSKLARIAE++ARRLQ+QERLT+QIA AI EA+ PLGVAVVIEA+HMCMVMRGV+KPGS+T+TSSV G F+ ++ TR+EFFSLI+S
Sbjct:   11 HKEEENDDEEIYENGSKALMKSV-----------KTKTR-----DPASAKCEQVLGKMQDNVKSLLESIGEDPEREGLQKTPLRMAKALMYFTHGYELSVDEIIGGAIFNENHHEMVVVRDIDIFSLCEHHMVPFYGKCHIGYIPDHKVLGLSKLARIAEIFARRLQVQERLTRQIALAIQEALNPLGVAVVIEASHMCMVMRGVQKPGSSTVTSSVCGVFEVDSRTRAEFFSLIRS 231          
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|1160563109|ref|XP_020430444.1| (GTP cyclohydrolase I [Polysphondylium pallidum PN500] >gi|281204123|gb|EFA78319.1| GTP cyclohydrolase I [Polysphondylium pallidum PN500])

HSP 1 Score: 285.034 bits (728), Expect = 1.274e-92
Identity = 135/214 (63.08%), Postives = 169/214 (78.97%), Query Frame = 0
Query:  127 HGENKLTAHGKHAQRAEGDEDSGGSSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLIKSG 340
            +G N L A  K   R          + E+ L  M   V++LLE +GEDP+REGL+ TP+RMAKAL+Y T GY+ +V  ++GGA+F E+H EMVVV+DI++FS+CEHHMVPF GK HIGYIP  KVLGLSKLARIAE++ARRLQ+QERLT+QIA AINEA+ P+GVAVVIEA+HMCMVMRGV+KPGS+T+TSSV G F+ ++ TRSEFFSLI+S 
Sbjct:   26 NGTNALLASVKTKVR------DASVNNEKTLALMQGNVKSLLESIGEDPEREGLQKTPLRMAKALMYFTHGYELSVDEIIGGAIFNENHHEMVVVRDIDIFSLCEHHMVPFYGKCHIGYIPDRKVLGLSKLARIAEIFARRLQVQERLTRQIALAINEALNPMGVAVVIEASHMCMVMRGVQKPGSSTVTSSVCGVFEQDSRTRSEFFSLIRSN 233          
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|19114393|ref|NP_593481.1| (GTP cyclohydrolase (predicted) [Schizosaccharomyces pombe 972h-] >gi|3183014|sp|O13774.1|GCH1_SCHPO RecName: Full=GTP cyclohydrolase 1; AltName: Full=GTP cyclohydrolase I; Short=GTP-CH-I >gi|2370485|emb|CAB11513.1| GTP cyclohydrolase (predicted) [Schizosaccharomyces pombe])

HSP 1 Score: 285.034 bits (728), Expect = 1.603e-92
Identity = 126/195 (64.62%), Postives = 165/195 (84.62%), Query Frame = 0
Query:  143 EGDEDSGGSSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLI 337
            +G +    ++EEE+++++S A+ T+LEC+GEDP+R+GL  TP R AKA+LY TKGY+Q +  V+  AVF+EDH EMV+V+DI+VFS+CEHH+VPF+GK+HIGYIPR +VLGLSKLARIA M++RRLQ+QERLTKQ+AQAI   ++P GVAVV+EATHMCMVMRGVEKPGS+T+TSS+TG F+ +  TR EFF LI
Sbjct:   38 QGTQRRIDTAEEEKVKKISNAISTILECLGEDPERQGLLGTPERYAKAMLYFTKGYEQNLTEVINEAVFQEDHEEMVIVRDIDVFSLCEHHLVPFIGKIHIGYIPRKRVLGLSKLARIANMFSRRLQVQERLTKQVAQAIQAVLKPQGVAVVMEATHMCMVMRGVEKPGSSTVTSSLTGIFQRSHKTREEFFRLI 232          
BLAST of EWM28191.1 vs. NCBI_GenBank
Match: gi|325183855|emb|CCA18313.1| (GTP cyclohydrolase I putative [Albugo laibachii Nc14] >gi|325183956|emb|CCA18414.1| GTP cyclohydrolase I putative [Albugo laibachii Nc14])

HSP 1 Score: 284.648 bits (727), Expect = 5.514e-92
Identity = 140/236 (59.32%), Postives = 176/236 (74.58%), Query Frame = 0
Query:  109 EEESVAEGGSGQRNGSVVHGENKLT-------AHGKHAQRAEGDEDSGGSSEEERLRRMSAAVRTLLECVGEDPDREGLRATPMRMAKALLYCTKGYDQTVAGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFLGKVHIGYIPRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIEATHMCMVMRGVEKPGSATITSSVTGAFKSNAATRSEFFSLI 337
            E E++ + G       V +G N +T         G    R E D       +  +L +M+ AV+TLLEC+GED +REGLR TP+RMAKALLY TKGY Q+++ V+  AVFEEDH EMV+V+DI+++S+CEHH+VPF+GKVHIGYIP  KVLGLSKLAR+++++ARRLQ+QERLTKQIAQAI   IQP GV VVIEATHMCMVMRGVEK G++T+TSSV G FK++  TRSEF SLI
Sbjct:   28 EPETIKQNGYHHSKTLVANGSNGITNTSDLETLSGALPSRFENDY----KLDHLKLNKMADAVKTLLECMGEDVEREGLRKTPLRMAKALLYNTKGYSQSLSQVLNQAVFEEDHDEMVIVRDIDLYSLCEHHVVPFIGKVHIGYIPNGKVLGLSKLARVSDVFARRLQVQERLTKQIAQAIMGVIQPRGVGVVIEATHMCMVMRGVEKSGASTVTSSVLGCFKTDPRTRSEFMSLI 259          
The following BLAST results are available for this feature:
BLAST of EWM28191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110536|gb|EWM28191.1|0.000e+0100.00gtp cyclohydrolase i [Nannochloropsis gaditana][more]
gi|695442303|ref|XP_009533421.1|5.152e-9572.19hypothetical protein PHYSODRAFT_355289 [Phytophtho... [more]
gi|1214713609|gb|OWZ24495.1|2.140e-9472.43GTP cyclohydrolase I [Phytophthora megakarya][more]
gi|301107826|ref|XP_002902995.1|4.968e-9472.43GTP cyclohydrolase I [Phytophthora infestans T30-4... [more]
gi|675178895|ref|XP_008898332.1|6.314e-9472.43GTP cyclohydrolase I [Phytophthora parasitica INRA... [more]
gi|953488203|emb|CEG48220.1|8.291e-9472.43gtp cyclohydrolase i [Plasmopara halstedii][more]
gi|831792276|ref|XP_012759990.1|1.674e-9359.07hypothetical protein SAMD00019534_036440 [Acytoste... [more]
gi|1160563109|ref|XP_020430444.1|1.274e-9263.08GTP cyclohydrolase I [Polysphondylium pallidum PN5... [more]
gi|19114393|ref|NP_593481.1|1.603e-9264.62GTP cyclohydrolase (predicted) [Schizosaccharomyce... [more]
gi|325183855|emb|CCA18313.1|5.514e-9259.32GTP cyclohydrolase I putative [Albugo laibachii Nc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2416rna2416Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications