rna2415, rna2415 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2415
Unique Name	rna2415
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1002
Alignment location	CM002459.1:329737..331614 -

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Properties


Property Name	Value
Product	phenylalanyl-trna synthetase beta chain
Orig transcript id	gnl\|cribi\|Naga_100004g49.9084.mrna
Orig protein id	gnl\|cribi\|Naga_100004g49.9084
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:329737..331614 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g49	gene2309	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28153.1	cds2407	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2415	rna2415-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:329737..331614-
coding sequence from alignment at CM002459.1:329737..331614-

mRNA sequence

>rna2415 ID=rna2415|Name=rna2415|organism=Nannochloropsis gaditana|type=mRNA|length=1002bp
ATGATACGTTTTGAATGGAAAACCATGGGTCTTGGTGCAGTCTCGGAGAA
AATAATTCTCATACACCCGTCACCATCTACATCATGCCGCATGATCGCAA
GTCATCGCGATTCCCGTCACAATAAGTCTCTTCCAGTTCCTCTCTTTCCC
TATTCCTGCCATCACTGGGACATGCTGCGTCAATTTCGTCGTTACGGGTC
CTTCTGTCGCCGTCACCGCCGGATCATGCGGCACTGCACTCACGAATTCG
AAAGCCACGCCACAGCGCTCCATCCCGGCCGAGTTGTTGAATTGCCGGAC
TACGCACCATCGCCCGTCTCCCTGTGCCAACCGCCCTCCTTTGATGCTCC
ATCGCTTGGTTCCCCAAGCTTTGCAATCACTGAGCGTCAGGCCATATTTT
CTCCCCGTGCGAGCCAAACACACATCTGGCTCCAGAGCCTTGTGAAAATA
CCGCTCTCCTTGTCCGCTGCCCGTAAAACGCACCCCAACGGCCCACCGAA
GCCGCGGGTCCAGCAGATCACACGGCCGGAAACGCTCCCCCTCCAAGCAC
ATGCTGCAGTGAATAGGAGGGTAAGCCATGGCATGAGATTGCAGGACTTA
ACCGCACCACATCGTCGTCGATGCCTGCGAGACGGTGCCGTGGAATGCCA
GAGGATGGGTCACCGCTATTGCCACAGGAAGTTTGATTCACTTATTCTCG
CTTACCCCGCACCAAACAATTTTTCCCTTTATCTTCCGTCAAGCGCACGT
AATCTCGACTGTCTTGTTCGATTCATTTTGACAATAGCTTTGAAGACAAC
ATCTATGGTTTCTTCATCTTCCTATACGTACCAGTGCTTGGCGCCACATT
GTTTGCAAGATCCAACAGATACGGGAGAGTCAGCAGAATGGCACCATTTT
CTTTCTAAGCACATTTCAGGCCCGTCACTGCCAAGGAGGGAAACTAAAAC
TTTGCCCTCTTTTCGATCTGCCACAATCCAAGCCGTTGAGCTGTCGCACT
GA

protein sequence of rna2415

>rna2415-protein ID=rna2415-protein|Name=rna2415|organism=Nannochloropsis gaditana|type=polypeptide|length=625bp
MPTISLVRDDLFNALGKSYTDDEFQDVCFAFGIELDEITTEGELASKDAG
SKGKCGPDGGAVVYKVDVPANRYDILCMEGLTRALRIFLELDKAPSYRKV
EPTDNGGTRTVMSVEASTASVRPFVACAILRDMTFDPLVYKSFIDLQEHL
HRNICRRRTLVAIGTHDLDTLRGPFRYTAADPASIQFSPLTSDDGRVFNA
KELLDFYRTDESAKHLSPYTDIIYEAPRYPVLYDSRGTVLSLPPVINGRH
SRITLQTRNVFIECTATDKTKANIVLDTVVTMFSQHCARPFTVEPVDVVY
EGPELSVETTPLLSTRKVAAKMSEIEGLVGRDLGPELVCQLCNKMQLGPA
SYHAETDTVVVTVPPTRSDVLHAVDVIEDVAIAFGYNNLPIKVPGTLTVG
APLPINAFSDLLRDEIARAGYLEVLTHGLCSRAENFAKLRRPETKAVSLS
NPANEEYEIVRTTLLPGLLKVLQHNRAAQVKDGLRFFEISDVVLRDDHTD
VGAKNIRRLVASSTSMVAGFESIHGLVDRVMLLVQIGPTEAYAGNSMRGE
ERMAVLKDKIQYYIVPSDDPAYFPGRCADVILVEDGKKSKPLKVGTFGVL
HPEVLKAYDIPFPTSMLEIDLEPLI

mRNA from alignment at CM002459.1:329737..331614-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2415 ID=rna2415|Name=rna2415|organism=Nannochloropsis gaditana|type=mRNA|length=1878bp|location=Sequence derived from alignment at CM002459.1:329737..331614- (Nannochloropsis gaditana)
ATGCCGACCATTTCTTTGGTGCGTGATGACCTTTTCAATGCTTTAGGCAA
GAGCTACACCGACGACGAGTTTCAAGATGTATGTTTCGCGTTTGGTATCG
AACTTGACGAAATTACCACCGAGGGGGAATTGGCGTCGAAAGACGCAGGC
AGCAAAGGGAAATGTGGGCCGGACGGTGGCGCCGTGGTGTACAAAGTCGA
TGTTCCGGCAAATCGGTACGACATCCTGTGCATGGAAGGCTTGACTAGAG
CGCTGCGCATTTTTTTGGAATTGGACAAAGCCCCGTCATACCGGAAGGTC
GAGCCAACGGATAATGGGGGAACCCGCACGGTCATGTCCGTAGAGGCCTC
GACGGCGTCCGTTCGCCCCTTCGTCGCGTGCGCCATCTTGCGAGACATGA
CATTTGATCCGTTGGTGTACAAAAGTTTCATCGATTTGCAAGAGCACTTG
CACAGGAACATCTGTCGAAGGCGAACTTTGGTGGCAATAGGGACGCATGA
CCTTGATACGCTGCGGGGCCCTTTTCGTTACACGGCGGCGGACCCGGCCT
CCATCCAATTCAGCCCGCTGACATCCGACGACGGGAGAGTATTCAATGCG
AAAGAGCTTTTGGATTTCTACAGGACCGATGAGTCGGCCAAGCATCTGAG
TCCGTACACGGACATTATCTATGAGGCACCTCGGTACCCAGTGCTGTATG
ACAGCCGAGGTACCGTTCTCTCTTTGCCGCCGGTCATCAACGGCCGTCAC
TCCCGCATTACCCTGCAGACCCGCAACGTTTTTATTGAATGCACGGCCAC
TGACAAGACCAAGGCCAATATTGTCCTTGACACGGTAGTGACCATGTTTT
CGCAGCATTGCGCGCGCCCCTTCACGGTCGAGCCTGTTGATGTTGTCTAC
GAAGGACCAGAGCTGAGCGTGGAGACGACGCCACTCCTCTCAACCCGCAA
AGTTGCCGCAAAAATGTCCGAAATTGAAGGCTTGGTTGGGAGAGACCTCG
GCCCCGAATTGGTCTGTCAGCTGTGCAACAAAATGCAGTTGGGTCCGGCG
TCCTACCATGCCGAGACGGACACGGTGGTGGTGACCGTGCCGCCCACACG
ATCGGACGTCCTTCACGCTGTGGATGTCATCGAAGACGTGGCTATCGCCT
TCGGATACAATAATTTGCCCATCAAGGTCCCCGGTACCCTCACAGTCGGA
GCCCCTCTGCCGATAAACGCTTTCTCAGATCTTCTGCGCGACGAGATTGC
CCGGGCAGGGTACTTGGAGGTGTTGACCCATGGCTTGTGCTCCCGCGCCG
AAAACTTTGCCAAGCTTCGCCGGCCAGAAACAAAAGCGGTGTCGCTTTCC
AACCCTGCAAACGAGGAGTACGAGATAGTGAGGACGACACTCCTGCCTGG
ACTCTTGAAAGTGCTTCAGCATAATAGGGCCGCTCAGGTAAAAGATGGCC
TTCGTTTCTTCGAGATCTCTGATGTGGTATTACGGGACGACCACACCGAT
GTAGGTGCCAAGAACATCCGGCGTTTGGTGGCGTCTTCTACGTCCATGGT
AGCGGGATTCGAATCGATTCACGGCTTGGTTGATAGAGTGATGTTGCTAG
TCCAAATAGGTCCCACCGAAGCGTACGCGGGGAACAGCATGCGAGGTGAA
GAACGTATGGCTGTTTTGAAGGACAAAATACAGTACTACATCGTCCCTAG
TGACGATCCTGCCTATTTCCCGGGGAGATGTGCTGATGTAATACTGGTCG
AGGACGGTAAGAAGAGCAAGCCACTGAAAGTAGGCACGTTTGGAGTGCTG
CATCCGGAGGTACTGAAGGCATACGACATCCCATTTCCTACTTCAATGCT
AGAAATTGATCTAGAGCCACTAATATGA

Coding sequence (CDS) from alignment at CM002459.1:329737..331614-

>rna2415 ID=rna2415|Name=rna2415|organism=Nannochloropsis gaditana|type=CDS|length=1878bp|location=Sequence derived from alignment at CM002459.1:329737..331614- (Nannochloropsis gaditana)
ATGCCGACCATTTCTTTGGTGCGTGATGACCTTTTCAATGCTTTAGGCAA
GAGCTACACCGACGACGAGTTTCAAGATGTATGTTTCGCGTTTGGTATCG
AACTTGACGAAATTACCACCGAGGGGGAATTGGCGTCGAAAGACGCAGGC
AGCAAAGGGAAATGTGGGCCGGACGGTGGCGCCGTGGTGTACAAAGTCGA
TGTTCCGGCAAATCGGTACGACATCCTGTGCATGGAAGGCTTGACTAGAG
CGCTGCGCATTTTTTTGGAATTGGACAAAGCCCCGTCATACCGGAAGGTC
GAGCCAACGGATAATGGGGGAACCCGCACGGTCATGTCCGTAGAGGCCTC
GACGGCGTCCGTTCGCCCCTTCGTCGCGTGCGCCATCTTGCGAGACATGA
CATTTGATCCGTTGGTGTACAAAAGTTTCATCGATTTGCAAGAGCACTTG
CACAGGAACATCTGTCGAAGGCGAACTTTGGTGGCAATAGGGACGCATGA
CCTTGATACGCTGCGGGGCCCTTTTCGTTACACGGCGGCGGACCCGGCCT
CCATCCAATTCAGCCCGCTGACATCCGACGACGGGAGAGTATTCAATGCG
AAAGAGCTTTTGGATTTCTACAGGACCGATGAGTCGGCCAAGCATCTGAG
TCCGTACACGGACATTATCTATGAGGCACCTCGGTACCCAGTGCTGTATG
ACAGCCGAGGTACCGTTCTCTCTTTGCCGCCGGTCATCAACGGCCGTCAC
TCCCGCATTACCCTGCAGACCCGCAACGTTTTTATTGAATGCACGGCCAC
TGACAAGACCAAGGCCAATATTGTCCTTGACACGGTAGTGACCATGTTTT
CGCAGCATTGCGCGCGCCCCTTCACGGTCGAGCCTGTTGATGTTGTCTAC
GAAGGACCAGAGCTGAGCGTGGAGACGACGCCACTCCTCTCAACCCGCAA
AGTTGCCGCAAAAATGTCCGAAATTGAAGGCTTGGTTGGGAGAGACCTCG
GCCCCGAATTGGTCTGTCAGCTGTGCAACAAAATGCAGTTGGGTCCGGCG
TCCTACCATGCCGAGACGGACACGGTGGTGGTGACCGTGCCGCCCACACG
ATCGGACGTCCTTCACGCTGTGGATGTCATCGAAGACGTGGCTATCGCCT
TCGGATACAATAATTTGCCCATCAAGGTCCCCGGTACCCTCACAGTCGGA
GCCCCTCTGCCGATAAACGCTTTCTCAGATCTTCTGCGCGACGAGATTGC
CCGGGCAGGGTACTTGGAGGTGTTGACCCATGGCTTGTGCTCCCGCGCCG
AAAACTTTGCCAAGCTTCGCCGGCCAGAAACAAAAGCGGTGTCGCTTTCC
AACCCTGCAAACGAGGAGTACGAGATAGTGAGGACGACACTCCTGCCTGG
ACTCTTGAAAGTGCTTCAGCATAATAGGGCCGCTCAGGTAAAAGATGGCC
TTCGTTTCTTCGAGATCTCTGATGTGGTATTACGGGACGACCACACCGAT
GTAGGTGCCAAGAACATCCGGCGTTTGGTGGCGTCTTCTACGTCCATGGT
AGCGGGATTCGAATCGATTCACGGCTTGGTTGATAGAGTGATGTTGCTAG
TCCAAATAGGTCCCACCGAAGCGTACGCGGGGAACAGCATGCGAGGTGAA
GAACGTATGGCTGTTTTGAAGGACAAAATACAGTACTACATCGTCCCTAG
TGACGATCCTGCCTATTTCCCGGGGAGATGTGCTGATGTAATACTGGTCG
AGGACGGTAAGAAGAGCAAGCCACTGAAAGTAGGCACGTTTGGAGTGCTG
CATCCGGAGGTACTGAAGGCATACGACATCCCATTTCCTACTTCAATGCT
AGAAATTGATCTAGAGCCACTAATATGA

Synonyms

Publications