rna2412, rna2412 (mRNA) Nannochloropsis gaditana

Overview
Namerna2412
Unique Namerna2412
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1827
Alignment locationCM002459.1:324340..325713 +

Link to JBrowse

Properties
Property NameValue
Product26s proteasome non-atpase regulatory subunit rpn12a
Orig transcript idgnl|cribi|Naga_100004g46.9081.mrna
Orig protein idgnl|cribi|Naga_100004g46.9081
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:324340..325713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g46gene2306Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2412rna2412-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28150.1cds2404Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2412 ID=rna2412|Name=rna2412|organism=Nannochloropsis gaditana|type=mRNA|length=1827bp
ATGGCATCGAGTACCAGCACAAACAACGACCTCACTTTCCCAGACGCGGG
GCTCTTGCCCAAAGAGGAGACTGGTGCCGCTGCTTTCTTGAGCCAGTACC
CGCACTTTGATGGGAGGGGTGTGGTGGTGGCAATATTAGACACAGGCGTG
GACCCGGGTGGTGCGGGGCTTCAGGTCACTTCCGATGGCAAACCTAAAAT
CATCGACATGATCGATTGTAGCGGCTCGGGTGACGTAGATACATCAACCA
CTGTCGAAGCCCTGCCTCCTGCTGAAAATGGAAGCCCGGACAGCGGCGCG
AAGCTCAACATCAAAGGTCTGACAGGACGTACGCTCCACCTGAACATGGC
CTGGCCCAATCCAAGTGGCAAGTGGCACATCGGGGTCAAGCGCGCAGTCG
AACTCTACCCCAACGGACTCAAGTCTCGCGTGGCAAAGGAGATGAAGAAA
GAATGGACATTGAAACACAGGGAAGTGGAGGCGGGCCTGCAGCGGGAGGT
GGCAGCCTTCAAGGCCTCGACTGGCACGGGCGCGATGACCCGGGACGAGA
TAGAGGACATGGCGGACCGTGAAGCGCGCGCGTCCCAGCTTGAGGAGATA
GCCAAGGGGTACGAGGACGCGGGGCCATTGTACGATGTGGTGGTATGGTT
TGACGGGAGTGCGTGGCAGGCAGCGGTGGATGTACGGGAAGACGGAGACC
TGAGGTCTTGGGAGCCCATGACCGATTTCCACGTAAAGCGCGATTGGCGC
ACTTTTAACGAGAAATTAGACAATCTGAATTTTGCCGTCAACATCTATGA
GGAAGGAAACATCTGCTCATTCGTGGTAGACGCAGGCTCGCACGGCACCC
ACGTAGCCGGCATCACCGCGGCGTACCACCCGGAATGCCCGAGCCGGAAC
GGCCTGGCCCCCGGTGCACAAATTGTATCATTGAAAATTGGCGATTCCCG
ACTCGGGTCGATGGAGACGGGCGTGGCGTTCGTCCGTGCTTTGCGGGAGG
CGGTCCGCCTGAAGGTGGACATGTTGAACGTGTCGTACGGAGAAGCAACG
GCGGTGACGGGGAGCGGCCGCGTCGTCGAGCTCATCGAGGAGATCGTGCA
CAAGCACGGGATCGTCTACGTGGGCAGCGCGAGCAACAACGGCCCTGCCC
TCTCCACGGTGGGCGCCCCGGGGGGAACGGGTACGGCCACCATCGCGGCC
GGCGCCTACTTGACGCCGTCGATGATGGAGGCTGGCTACTCCTTGCGGAG
ACCCTTCGCCGCCGTCAACTTCACCTGGTCGAGCGTAGGGCCTGCCTATG
ACGGCGCGCAGGGCCCCACCATCATGGCCCCCGGGGGCGCGATCACCAGC
GTGCCCACTTGGACCCTGCAGAGGGGCATGCTCATGAATGGGACCTCCAT
GGCGGCCCCCAATGCCTGCGGCTCCCTGGCCCTCGTCCTCTCGGCTCTCA
AGGCGCAAGGCCTCCCCTACTCTCCTCACCTGCTCCGTCGGGCCGTCATG
GCGACCGCCAAGACCCTCCCCTCTCTCCATCCCTTGGTGCAGGGCCACGG
CATGGTACAGGTGGGACCTGCGCTGGACTACGTGATGACTTCCGCCGCCA
TACCCTACGTGCGGACCCCCCTGAAAGTAAGCGTGGCGGGCATCAAGGGT
AATTCCTGCCGAGGCGTGTACTTGCGGGAAGCAGGGGAGAGTCGGGTGTC
TCGTGACTTCAAGGTCAGCGTCGAAGCTCTCTTTCATGAGAAGGCCGCTT
CCCACGAGAAGGTCAACTTCGAGGCGCGCGTAGCCCTGTCGCTGTCCGAG
GGAGCGGGGGAGGGGGGGGGGGAATGA
back to top

protein sequence of rna2412

>rna2412-protein ID=rna2412-protein|Name=rna2412|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MALEQGEKLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSP
HASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDS
ALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQL
MVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGA
AKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPS
LRLISETLSYATELERIV
back to top

mRNA from alignment at CM002459.1:324340..325713+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2412 ID=rna2412|Name=rna2412|organism=Nannochloropsis gaditana|type=mRNA|length=1374bp|location=Sequence derived from alignment at CM002459.1:324340..325713+ (Nannochloropsis gaditana)
ggGGCGTACAGAGGAACACGGTTATTGCGGTCGCGTGCACGCGTGCACGT
TTTTCATCGACTGAGTTTGTAAATTGGCTATGCATAGTTTTCTTGACATA
ATTTTTGTTTCGTATCAGATATCAGAAACCACTGACAGACAGCTCGATTA
GCTGCCGTTGCTGCACCGCCCGACGGCCCGCACCCACCAAAGAAAGGCGT
ATAACACAGTGGACATCTTGAAATGGCGTTGGAACAAGGCGAAAAGGTAC
GTGAATGTAATAGAAACACTGTAGGATCTCCCCATGTGCGGCTGCGAGCA
AAAAGTTCCGTGAAACAACAGCCCCCACCCTAATTTGTTTTACTGTTTAC
TCGCTACTTGATGTTCTTTGAACGTGCACGAAGCATCGCAAGCACTTTGA
AGCAATTATGATACGGTTGTAGATATGGAGTGTTGACAAAGTCGTGCGCC
AAGGACCTTTATCTCCAAACATCTTTTCATTTGGATTCCAACCAAACATT
CTTCCTCGCAGTTGGTTATCAAACTCCAATCAGCCGTGGAGAGTGATCAT
CTAGGCGAAGCTGCCAGCCTTCTCGGGGAACTCAAGGTCTTGCTAACCAA
TTTTGAgtctctcccccccatgAACCAACCCTCTCCGCATGCGTCGGAGG
AATGCGCCTTGGGCCGCCAGGTCCTCGAACAAGCTGTCTTCCTAGCCGTA
AAGCAGCGAGACAAAATAGCATTTCAGCGACAAATGGCACAATTGAAGCC
TTATTATCAAGACAAAGGTCTCGGCTTGACTGATTCGGCTTTGCGCATGC
CTATACTTGGGCTGAACTTGTTGTTCCTGCTAGTGGAGAACCGCCTGGCT
GAGTTTCACTCGGAACTCGAACACTTGTCGGAAGCTGAACGGGCAAATGT
CTACGTTTCTTTCCCTATTCTGGTGGAGCAGCAACTGATGGTTGGCTCCT
ACCACAAAGTTCTTGAAGCCAGGACACGCACGCCTCATCCGGGCTACGCG
TTCTTCATGTCGTTGTTGGTGGACACCGTGCGCGATGCGGTAGCTGACTG
CTCCGAGGCGGCATACGAGCGACTAGGCATCGGGGCTGCGAAGGAGATAT
TGCTTCTAGAATCAGACACTGCCTTGGCGGAGTATGCGGCGGTAAAGCAC
CCGGACTGGAGAGTGGATGGTGATGGGTTCGTTTATTTTGGGAAGGATCA
TGGTCCAAAACAGGCCAAGGCAAGTGATGTACCTTCCTTGAGGTTAATTT
CTGAAACTCTATCGTACGCAACCGAGTTAGAGCGAATCGTATAGTAACAG
AACAAGGGGTCAACAAAACCGActgaggagaagaaaagaataaTTATGCC
AGAGATTTTACGACACGTACCCTT
back to top

Coding sequence (CDS) from alignment at CM002459.1:324340..325713+

>rna2412 ID=rna2412|Name=rna2412|organism=Nannochloropsis gaditana|type=CDS|length=1614bp|location=Sequence derived from alignment at CM002459.1:324340..325713+ (Nannochloropsis gaditana)
ATGGCGTTGGAACAAGGCGAAAAGTTGGTTATCAAACTCCAATCAGCCGT
GGAGAGTGATCATCTAGGCGAAGCTGCCAGCCTTCTCGGGGAACTCAAGG
TCTTGCTAACCAATTTTGAgtctctcccccccatgAACCAACCCTCTCCG
CATGCGTCGGAGGAATGCGCCTTGGGCCGCCAGGTCCTCGAACAAGCTGT
CTTCCTAGCCGTAAAGCAGCGAGACAAAATAGCATTTCAGCGACAAATGG
CACAATTGAAGCCTTATTATCAAGACAAAGGTCTCGGCTTGACTGATTCG
GCTTTGCGCATGCCTATACTTGGGCTGAACTTGTTGTTCCTGCTAGTGGA
GAACCGCCTGGCTGAGTTTCACTCGGAACTCGAACACTTGTCGGAAGCTG
AACGGGCAAATGTCTACGTTTCTTTCCCTATTCTGGTGGAGCAGCAACTG
ATGGTTGGCTCCTACCACAAAGTTCTTGAAGCCAGGACACGCACGCCTCA
TCCGGGCTACGCGTTCTTCATGTCGTTGTTGGTGGACACCGTGCGCGATG
CGGTAGCTGACTGCTCCGAGGCGGCATACGAGCGACTAGGCATCGGGGCT
GCGAAGGAGATATTGCTTCTAGAATCAGACACTGCCTTGGCGGAGTATGC
GGCGGTAAAGCACCCGGACTGGAGAGTGGATGGTGATGGGTTCGTTTATT
TTGGGAAGGATCATGGTCCAAAACAGGCCAAGGCAAGTGATGTACCTTCC
TTGAGGTTAATTTCTGAAACTCTATCGTACGCAACCGAGTTAGAGCGAAT
CGTATAGATGGCGTTGGAACAAGGCGAAAAGTTGGTTATCAAACTCCAAT
CAGCCGTGGAGAGTGATCATCTAGGCGAAGCTGCCAGCCTTCTCGGGGAA
CTCAAGGTCTTGCTAACCAATTTTGAgtctctcccccccatgAACCAACC
CTCTCCGCATGCGTCGGAGGAATGCGCCTTGGGCCGCCAGGTCCTCGAAC
AAGCTGTCTTCCTAGCCGTAAAGCAGCGAGACAAAATAGCATTTCAGCGA
CAAATGGCACAATTGAAGCCTTATTATCAAGACAAAGGTCTCGGCTTGAC
TGATTCGGCTTTGCGCATGCCTATACTTGGGCTGAACTTGTTGTTCCTGC
TAGTGGAGAACCGCCTGGCTGAGTTTCACTCGGAACTCGAACACTTGTCG
GAAGCTGAACGGGCAAATGTCTACGTTTCTTTCCCTATTCTGGTGGAGCA
GCAACTGATGGTTGGCTCCTACCACAAAGTTCTTGAAGCCAGGACACGCA
CGCCTCATCCGGGCTACGCGTTCTTCATGTCGTTGTTGGTGGACACCGTG
CGCGATGCGGTAGCTGACTGCTCCGAGGCGGCATACGAGCGACTAGGCAT
CGGGGCTGCGAAGGAGATATTGCTTCTAGAATCAGACACTGCCTTGGCGG
AGTATGCGGCGGTAAAGCACCCGGACTGGAGAGTGGATGGTGATGGGTTC
GTTTATTTTGGGAAGGATCATGGTCCAAAACAGGCCAAGGCAAGTGATGT
ACCTTCCTTGAGGTTAATTTCTGAAACTCTATCGTACGCAACCGAGTTAG
AGCGAATCGTATAG
back to top
Synonyms
Publications