EWM28150.1, cds2404 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|585110495|gb|EWM28150.1| (26s proteasome non-atpase regulatory subunit rpn12a [Nannochloropsis gaditana]) HSP 1 Score: 545.814 bits (1405), Expect = 0.000e+0 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query: 1 MALEQGEKLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
MALEQGEKLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV
Sbjct: 1 MALEQGEKLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|971507053|dbj|GAQ91151.1| (Hypothetical protein KFL_007350010 [Klebsormidium nitens]) HSP 1 Score: 229.95 bits (585), Expect = 1.090e-71 Identity = 120/267 (44.94%), Postives = 180/267 (67.42%), Query Frame = 0
Query: 2 ALEQGEKLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
L + KL+ L+S+ +S + LG+LK+ +T F +LPP+ Q +P EE +LGR+VLE AV L VK+ D+ F+RQ QLKPYY D + S+ I GLNLL LLV+NR++EFH+ELE + A+ ++ ++ + I +EQ LM G+Y KVL +RT P YAFF++LL+DTVRD +A CSE AY+ L + AK+++LL++D +A++A ++ DW + +G +YF K + ++A + D+PS +LI++TL YA ELERIV
Sbjct: 4 GLAEAGKLLQGLRSSFQSGDVASCQQHLGQLKIRMTQFPALPPLFQKTPTQKEELSLGREVLEYAVLLTVKKEDEAGFERQFLQLKPYYVDTRNSIPPSSREQLITGLNLLRLLVQNRISEFHTELELIPSAQHSSPFIRYAIELEQSLMEGAYQKVLNSRTNLPDQSYAFFVNLLLDTVRDEIAGCSEKAYDFLSLAEAKKMMLLKTDQEVADFAGMR--DWDIK-NGSIYFRKIN--EEAISKDIPSHQLITQTLGYARELERIV 265
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|299473446|emb|CBN77843.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 227.254 bits (578), Expect = 1.153e-70 Identity = 131/267 (49.06%), Postives = 178/267 (66.67%), Query Frame = 0
Query: 3 LEQGEKLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKAS-DVPSLRLISETLSYATELERIV 268
L +GE+L +++ E + +A SLL +LK+L+T F+SLPPM P+A+ E L R V+E AVFL+ ++ D AFQR MAQLKP D L S + +LGLNLLFLLVENRLAEFHSELE + +AERA+ V FP+ +EQ LMVGSY +VL AR PH Y +F+ L+ TVRD +A+CSEAAY L I A+++L ++ + L + A K+P+W + D ++ P+ K S ++PS+RLI+E LSYATELERIV
Sbjct: 4 LAEGEQLFASFRASAEKGDIQKAKSLLTQLKILMTTFDSLPPMGAEGPNAARERTLARDVMEVAVFLSAREGDSDAFQRHMAQLKPLCMDFVSQLPPSPNQSAVLGLNLLFLLVENRLAEFHSELELMGDAERASECVMFPVRLEQFLMVGSYDQVLAARDHVPHEYYKYFLESLLGTVRDGIAECSEAAYSELSIAEAQKMLRMDQRSELEAFVADKYPEWELTADKIIF----KAPEACKKSAEIPSMRLIAECLSYATELERIV 266
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|1149798799|ref|XP_020160015.1| (26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Aegilops tauschii subsp. tauschii] >gi|475564261|gb|EMT14491.1| Putative 26S proteasome non-ATPase regulatory subunit 8 [Aegilops tauschii]) HSP 1 Score: 226.098 bits (575), Expect = 3.606e-70 Identity = 119/261 (45.59%), Postives = 165/261 (63.22%), Query Frame = 0
Query: 8 KLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
+L+ + ++A ++ + ++LL +LKVLLT F SLPP+ Q +P+A EE L R++ EQAV L+VK D+ AF+R QLKPYY D + S+ PI+G NLL LLV+NR+AEFH+ELE L N Y+ + +EQ M G+Y++VL AR PH Y +FM LLV TVRD +A CSE Y+ L I AK++ SD L +Y A +HP+W V DG V F K + K ++P+ +I++TL YA ELERIV
Sbjct: 10 QLIDRFKAAFKASNFDVCSTLLSQLKVLLTKFPSLPPVFQQTPNAVEELKLAREIYEQAVILSVKMEDQDAFERDFCQLKPYYMDTCGIIPPSSEEYPIMGANLLRLLVQNRIAEFHTELELLPAKALDNAYIKHGVELEQSFMEGAYNRVLSARQTAPHETYIYFMDLLVKTVRDEIAGCSEKGYDYLSINDAKQMFKFSSDKELQQYIAEEHPEWDV-KDGRVLFQKAKESQPCK--EIPAAPVINQTLGYARELERIV 267
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|566030622|gb|ETI53533.1| (hypothetical protein F443_03547 [Phytophthora parasitica P1569] >gi|566030623|gb|ETI53534.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567968254|gb|ETK93397.1| hypothetical protein L915_03430 [Phytophthora parasitica] >gi|567968255|gb|ETK93398.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567996703|gb|ETL46807.1| hypothetical protein L916_03382 [Phytophthora parasitica] >gi|567996704|gb|ETL46808.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568025926|gb|ETL99927.1| hypothetical protein L917_03309 [Phytophthora parasitica] >gi|568025927|gb|ETL99928.1| hypothetical protein, variant [Phytophthora parasitica] >gi|570334263|gb|ETO82211.1| hypothetical protein F444_03615 [Phytophthora parasitica P1976] >gi|570334264|gb|ETO82212.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570334269|gb|ETO82217.1| hypothetical protein F444_03620 [Phytophthora parasitica P1976] >gi|570958361|gb|ETP23340.1| hypothetical protein F441_03541 [Phytophthora parasitica CJ01A1] >gi|570958362|gb|ETP23341.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570994132|gb|ETP51330.1| hypothetical protein F442_03527 [Phytophthora parasitica P10297] >gi|570994133|gb|ETP51331.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970655502|gb|KUF93657.1| Acyl-coenzyme A oxidase [Phytophthora nicotianae]) HSP 1 Score: 223.787 bits (569), Expect = 2.589e-69 Identity = 121/256 (47.27%), Postives = 167/256 (65.23%), Query Frame = 0
Query: 13 LQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
L++AV+ + EA LL +LK+ LT +LPP SP+A +E L R VLE A L++ + D AF+R M QLK YY GL S L PILG LL LLVENR+AEFH+ELE L E R + ++F + +EQ LM G+Y+KVLE+RT P+P + FF+S L+ TVR+ +ADC+E AY+ L + A+++L+ +S L+ Y + P+W V +G V+F K ASD+PSLRL+ ETL+YATEL+RIV
Sbjct: 15 LRAAVDGKQVDEATKLLAQLKMALTKLPALPPCGIDSPNAKQELQLARHVLESATLLSILREDMTAFERSMIQLKIYYNS---GLERSPLHYPILGTRLLQLLVENRMAEFHNELELLPEQSRQDPNIAFAVKLEQYLMEGTYNKVLESRTNVPNPYFPFFLSQLLQTVRENIADCAEVAYQCLTLSDAQKMLIFDSAAELSAYIQEEKPEWVV-REGRVWFKAPE--KSLGASDIPSLRLVGETLAYATELDRIV 264
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|675183691|ref|XP_008900730.1| (hypothetical protein PPTG_08401 [Phytophthora parasitica INRA-310] >gi|675183693|ref|XP_008900731.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|568098935|gb|ETN13653.1| hypothetical protein PPTG_08401 [Phytophthora parasitica INRA-310] >gi|568098936|gb|ETN13654.1| hypothetical protein, variant [Phytophthora parasitica INRA-310]) HSP 1 Score: 223.402 bits (568), Expect = 3.510e-69 Identity = 121/256 (47.27%), Postives = 166/256 (64.84%), Query Frame = 0
Query: 13 LQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
L++AV+ + EA LL +LK+ LT +LPP SP+A +E L R VLE A L++ + D AF+R M QLK YY GL S L PILG LL LLVENR+AEFH+ELE L E R + ++F + +EQ LM G+Y+KVLE+RT P+P + FF+S L+ TVR+ +ADC+E AY+ L + A+++L+ +S L Y + P+W V +G V+F K ASD+PSLRL+ ETL+YATEL+RIV
Sbjct: 15 LRAAVDGKQVDEATKLLAQLKMALTKLPALPPCGIDSPNAKQELQLARHVLESATLLSILREDMTAFERSMIQLKIYYNS---GLERSPLHYPILGTRLLQLLVENRMAEFHNELELLPEQSRQDPNIAFAVKLEQYLMEGTYNKVLESRTNVPNPYFPFFLSQLLQTVRENIADCAEVAYQCLTLSDAQKMLIFDSAAELTAYIQEEKPEWVV-REGRVWFKAPE--KSLGASDIPSLRLVGETLAYATELDRIV 264
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|970632332|gb|KUF78663.1| (26S proteasome non-ATPase regulatory subunit 8 A [Phytophthora nicotianae]) HSP 1 Score: 223.402 bits (568), Expect = 4.410e-69 Identity = 121/256 (47.27%), Postives = 166/256 (64.84%), Query Frame = 0
Query: 13 LQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
L++AV+ + EA LL +LK+ LT +LPP SP+A +E L R VLE A L++ + D AF+R M QLK YY GL S L PILG LL LLVENR+AEFH+ELE L E R + ++F + +EQ LM G+Y+KVLE+RT P+P + FF+S L+ TVR+ +ADC+E AY+ L + A+++L+ +S L Y + P+W V +G V+F K ASD+PSLRL+ ETL+YATEL+RIV
Sbjct: 15 LRAAVDGKQVDEATKLLAQLKMALTKLPALPPCGIDSPNAKQELQLARHVLESATLLSILREDMTAFERSMIQLKIYYNS---GLERSPLHYPILGTRLLQLLVENRMAEFHNELELLPEQSRQDPNIAFAVKLEQYLMEGTYNKVLESRTNVPNPYFPFFLSQLLQTVRENIADCAEVAYQCLTLSDAQKMLIFDSAAELXAYIQEEKPEWVV-REGRVWFKAPE--KSLGASDIPSLRLVGETLAYATELDRIV 264
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|702338465|ref|XP_010055889.1| (PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A [Eucalyptus grandis] >gi|629107298|gb|KCW72444.1| hypothetical protein EUGRSUZ_E00889 [Eucalyptus grandis]) HSP 1 Score: 223.402 bits (568), Expect = 4.949e-69 Identity = 125/257 (48.64%), Postives = 166/257 (64.59%), Query Frame = 0
Query: 12 KLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
+ ++A+ + +LL +LKVLLT F SLPP+ + +P+A E L R + E AV L+VK D+ AF+R QLKPYY D G + S PILGLNLL LLV+NR+AEFH+ELE LS A N + + +EQ M G+Y++VL AR PH Y +FM LL TVRD +A CSE AY+ L IG A+++LL SD LAEY +HP+W + G VYF K + A + ++PSL+LI++TLSYA ELERIV
Sbjct: 14 RFKAALVRNDFSTCTTLLSQLKVLLTEFNSLPPLFEETPNAVHELTLARDIYEHAVILSVKMEDQEAFERDFFQLKPYYTDAGGCIPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSSAALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYVYFMDLLAKTVRDEIAGCSEKAYDYLSIGDARQMLLFSSDQELAEYIKEEHPEWEIKS-GSVYFQK--AKESAPSKEIPSLQLINQTLSYARELERIV 267
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|568056377|gb|ETM53089.1| (hypothetical protein L914_03411 [Phytophthora parasitica] >gi|568056378|gb|ETM53090.1| hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 223.016 bits (567), Expect = 5.540e-69 Identity = 121/256 (47.27%), Postives = 166/256 (64.84%), Query Frame = 0
Query: 13 LQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
L++AV+ + EA LL +LK+ LT +LPP SP+A +E L R VLE A L++ + D AF+R M QLK YY GL S L PILG LL LLVENR+AEFH+ELE L E R + ++F + +EQ LM G+Y+KVLE+RT P+P + FF+S L+ TVR+ +ADC+E AY+ L + A++ L+ +S L+ Y + P+W V +G V+F K ASD+PSLRL+ ETL+YATEL+RIV
Sbjct: 15 LRAAVDGKQVDEATKLLAQLKMALTKLPALPPCGIDSPNAKQELQLARHVLESATLLSILREDMTAFERSMIQLKIYYNS---GLERSPLHYPILGTRLLQLLVENRMAEFHNELELLPEQSRQDPNIAFAVKLEQYLMEGTYNKVLESRTNVPNPYFPFFLSQLLQTVRENIADCAEVAYQCLTLSDAQKTLIFDSAAELSAYIQEEKPEWVV-REGRVWFKAPE--KSLGASDIPSLRLVGETLAYATELDRIV 264
BLAST of EWM28150.1 vs. NCBI_GenBank
Match: gi|1204900918|ref|XP_021282589.1| (26S proteasome non-ATPase regulatory subunit 8 homolog A isoform X2 [Herrania umbratica]) HSP 1 Score: 222.246 bits (565), Expect = 1.193e-68 Identity = 128/266 (48.12%), Postives = 169/266 (63.53%), Query Frame = 0
Query: 3 LEQGEKLVIKLQSAVESDHLGEAASLLGELKVLLTNFESLPPMNQPSPHASEECALGRQVLEQAVFLAVKQRDKIAFQRQMAQLKPYYQDKGLGLTDSALRMPILGLNLLFLLVENRLAEFHSELEHLSEAERANVYVSFPILVEQQLMVGSYHKVLEARTRTPHPGYAFFMSLLVDTVRDAVADCSEAAYERLGIGAAKEILLLESDTALAEYAAVKHPDWRVDGDGFVYFGKDHGPKQAKASDVPSLRLISETLSYATELERIV 268
L + +L + ++A + A+LL +LKVLLT F SLPP+ + +P+A E L R++ E AV L+VK D+ AF+R QLKPYY D G L S PILGLNLL LLV+NR+AEFH+ELE LS N + + +EQ M G+Y++VL AR PH Y +FM LL TVRD +A CSE AY+ L I A+++LL SD L EY +HPDW V +GFV+F K + A ++PSL+LI++TLSYA ELERIV
Sbjct: 5 LTEVSQLFERFKAAFIRNDYDSCANLLSQLKVLLTKFRSLPPLFENTPNAVNELLLAREIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDAGSRLPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSATALENPCIKHAVELEQSFMEGAYNRVLSARQTAPHETYVYFMDLLAKTVRDEIAGCSEKAYDYLSIDDARQMLLFSSDQELLEYIKEEHPDWEV-KNGFVFFQK--AKESAPCKEIPSLQLINQTLSYARELERIV 267 The following BLAST results are available for this feature:
BLAST of EWM28150.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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