rna2408, rna2408 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2408
Unique Name	rna2408
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2349
Alignment location	CM002459.1:314240..315933 -

Link to JBrowse

Properties


Property Name	Value
Product	solute carrier family 25 (mitochondrial carrier peroxisomal membrane 34kda) member 17
Orig transcript id	gnl\|cribi\|Naga_100004g41.9098.mrna
Orig protein id	gnl\|cribi\|Naga_100004g41.9098
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:314240..315933 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g41	gene2302	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2408	rna2408-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28167.1	cds2400	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:314240..315933-
coding sequence from alignment at CM002459.1:314240..315933-

mRNA sequence

>rna2408 ID=rna2408|Name=rna2408|organism=Nannochloropsis gaditana|type=mRNA|length=2349bp
TCCACCTTCATGCACTCGACAAGCTCAGACAATCACCACGTTCTCTCAAT
AGTGCGGTATTCTTGCGATTTTAAAAGCCAGCGTGCAACGGGCCTGGATC
TACTGGCGCTTGTGGGGAGAGCTCTATAAGGCTCGAGGTGGTCCCGGCGG
GCAACGACTCGGCAGGCTTGAATCGTCCCACACGGCCAGAGGCGCCGCAG
CAGCTCCTTTTTGCCCGCCCGACCCGATATTTGGAGAGGAAAGGGTGACA
TGTCGCCTTCTGTAGAGTCCTGCGACGCGACGGCTGGTGGATTCAGTCAA
GGAAACGGTCACAATTACAAGAACAAACTACAAGCTATCTGGTGCATCTT
ACAGGCGAAGACTCTCGACCTTTTGGACAGTCCATTTATGCTCTCCCTTA
CGCAGCGACTGGCTGTTCTCTTGGAGGCCTTGGGCGTCCCGCCGCCCTAC
CCGGAGCCCGATCAAATTGTCCTTTGCGTCACGGCCGTTCTCAGCACCCT
ACTCCTATATTTTTTGCTTTTCGGCAAGCGGCATCGACTCAGAAGGAAAA
TGCTGGCGAAAGATTTGCGGGAAGCGCGGAAAAAGGTGCAAGAGCTGGAG
GAGAAATTGCTGGAGATGGAGGTGAAGGAGGAGGGCGCCGGTCCTAAAGG
CGACCAAGAGCCCGTTCGTATTTGGATGGATGGCTGCTTCGACATGATGC
ACTACGGTCACATGAACGCCTTTCGCCAAGGCAAGGCTCTGGGGACCTAT
TTGGTGGTGGGCGTGAATTCGGACGCCACCATCACGGCTTGCAAGGGCCC
GCCCGTGATGAACGACGAGGAGCGCCTGGCCGCGGTGGAGGGCTGCCGCT
TCGTGGACGAGGTAGTCCCGGACGTGCCCTACATCATGGATGAGGACTAT
TTGAAGATGGTGATGGAGAAATACCGGATCGACTTCGTCGTGCACGGCGA
CGACCCCTGCATCGTCAACGGTCGGGACGTGTACGAGCTCCCTCAGAGCA
TGGGGAAGTACCGAACGATACCGCGCACGGAGGGGGTGAGCACCACGGAC
ATCGTGGGCAGGATGCTTTTGATGAGCCGGCGGCACCATCAACGGACCAT
GTCGACGGGCTCGCAGACGGGCCAGTTGGCCTCGGAGAAGAAGACGCAAG
GCGGGGCTTTGCAAGAGGGGGTGTCCCCCTCGGAGATCGAGGCGCTGGAG
CAGCAGCTCCACCACCAGGAAGGCGCGGCATTCTACCGACGGTCCCGCTT
TCTGACCACCTCCCGGATGATTCGCTTGTTCTCCGCGGGCATGCGCGCGG
GCCCCCCCCAGCCGGGTAGCCAGGTCGTGTACATAGATGGGAGCTGGGAC
ATGTTCCACGCCGGACACGTCACGACGCTCAAGAAGATCAAGGAGGGTCG
GTGCCTCCCTGAGGGCCAGCCCGTGTTCCTGATTGTGGGGGTGCACAACG
ATCAGGTGGTGAATGCCCAGCGTGGCTCCAACTTCCCGATCATGAATTTG
CACGAGCGCGTCTTGTCCGTGTTGGGGTGTAAGTACGTGGACGACGTCCT
GATCGACGCTCCGTACACCGTGACGCGGGAAATGATCGCTTCCCTCAAGC
TTTCTCTGGTCCTGCATGGCAGGCATAGGGACGATATCGAGGACGAGGGG
ACCTGGGGGGGGGGCTGGGGGGAGGGAGGGAAGGAGGGGAAGGGGAGGAA
GACCCTTTTGCCGTGCCGAAAGAGATGAAAATATTTATGGAGATATCCTC
AGACTGTGACCTGTCGGTGCGTGAGATTGTCTCCAGGATTCAGAAGAATC
AGGAGCTTTTCGTGGCCAAGTACAGTAAGAAAAAGGTGGCCGAAGACAAC
TACTACAATGCCCGGTATGCCTTGGAGGAGGAGGGGAACGGGGGGTCTGA
GGTACGAAACGGAGAGCATTAGAGCAGGAGGAGTCGATGAGAACAACATT
GGCCGATGGGGGCGCTCGCGTGGCAATGACTTCCACCCGTGATGATCAGG
AGCCGTTTCCACAAGAGTCATGTCGAGCAGTTGAATGTTCCGGTGACATA
GAAGCATGTGTGCCATGGATTAGGAGGAGGATGTAGCGAAATCGTATATC
AAATGTGCAGAGAAATGTGGGGAGGGAAAGCAAGGGGAAGGGTGTAGGTA
GAGGCAGTGTATCAAGTACAGGCAGGCAACAACTGGAAGATATGCAAGCA
CTGCAAGCGCACATGCGACCGCCTGTGGGAGGTAGGAGGGTCTCCCGCAC
CGAAAAATGCACAAAGGGTAAGACAAGGAGACCTTGAGAAACAGCCTCAT
ATCGTTCACACTCCGGGAGTTGGTGGCGTGGAGAATTATTTTCCTTTCA

protein sequence of rna2408

>rna2408-protein ID=rna2408-protein|Name=rna2408|organism=Nannochloropsis gaditana|type=polypeptide|length=463bp
MASREDSAGVKTCPMPVRPPQPAATSEILESNSPITVLSMPSPLRDHELR
PPAAKLAVTRPALLPEGNHPVNEKSSPGEQNTATMGRESLIHALAGGLGS
ALALALTYPLDQVRTFQQVNDTPEDDEYINHGGSSPLLNQETCPATSLAR
LAFLFRPYRTASVMVQRHGAGALYRGMVPVLISMGLSNAVFFFVSNLLKA
ILSRYRQRTGKSLGYFGHLATGTIAGVLNVVLTTPLWVAGMRAKLSSAQG
WNILTIMAKIWKDEGVMALWSGMIPSLLLVCNPVLQHFVYDVLKRRTLAT
RRVRSSQLSFPPSSMPIGRSEVTGAAVALTSLEAFYFGAVGKFVATIVSY
PLQVAQSRLRQQSQKSETDGNNATTSKEEGKTDWERELLAQSANHYTGTL
DCLLDLWRRKGVAGLFQGVESKLLQTVVTSAFMFLAYENIFKVTKGVLDV
TDRKGLGGKLHNE

mRNA from alignment at CM002459.1:314240..315933-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2408 ID=rna2408|Name=rna2408|organism=Nannochloropsis gaditana|type=mRNA|length=1694bp|location=Sequence derived from alignment at CM002459.1:314240..315933- (Nannochloropsis gaditana)
CCTGGTTAATCCACAGGTCTCATGGCATCAAGAGAGGATAGTGCTGGCGT
GAAGACCTGCCCCATGCCTGTGCGACCTCCGCAGCCGGCTGCGACTTCAG
AAATCCTGGAGTCGAACAGTCCGATCACAGTGCTTTCCATGCCAAGCCCT
TTGAGAGACCATGAATTGCGCCCTCCGGCAGCTAAACTTGCTGTGACGCG
ACCCGCGCTATTGCCTGAGGGTAACCACCCCGTGAATGAGAAGTCGTCTC
CTGGAGAGCAGGTAAGTCGTCAGCAAGGCCGAAGCTATGACTTGGTTCGT
AGCTCCCTTGTCTTTCCTTGAATAAGCACACTGACCGTATCAACTTTTAT
ACGTTCCATCTATTTTCTATCTTCCTGCGATAAGAACACGGCTACCATGG
GTCGAGAGAGTTTGATACACGCGCTAGCGGGCGGTTTGGGATCCGCCCTT
GCTCTTGCCTTGACATACCCCTTGGACCAAGTTCGTACATTTCAACAAGT
GAACGACACCCCCGAGGATGACGAGTACATTAACCACGGAGGGAGTAGCC
CATTATTGAATCAGGAGACTTGCCCGGCGACATCATTAGCCCGCTTGGCC
TTTCTTTTCCGACCCTATCGGACTGCCTCCGTGATGGTTCAAAGACATGG
AGCTGGCGCACTGTACCGCGGGATGGTCCCTGTGCTTATATCGATGGGGC
TCAGCAACGCCGTTTTTTTTTTCGTCAGCAACCTCTTAAAGGCAATACTT
TCTCGATACCGACAGCGGACGGGAAAATCCTTGGGGTATTTCGGCCATCT
TGCCACCGGCACGATCGCTGGAGTGTTGAACGTCGTGCTAACGACTCCAC
TGTGGGTCGCGGGCATGCGCGCGAAGCTCAGCAGCGCGCAAGGCTGGAAT
ATTCTGACGATCATGGCCAAAATTTGGAAAGATGAAGGTGTCATGGCTTT
GTGGAGTGGAATGATTCCGTCCCTGCTCCTCGTCTGCAACCCAGTCCTGC
AGCATTTCGTCTACGATGTGCTAAAACGCCGCACCCTGGCCACGCGCCGT
GTGAGAAGCTCCCAGCTGTCATTTCCCCCCTCCTCGATGCCTATTGGCAG
GTCCGAAGTGACGGGGGCGGCGGTGGCGCTTACGTCTTTGGAGGCCTTTT
ACTTCGGTGCGGTGGGAAAATTCGTCGCCACGATCGTGTCTTACCCGTTG
CAGGTGGCACAGAGTCGGTTGCGGCAGCAGTCTCAGAAAAGTGAGACCGA
CGGGAATAATGCTACCACTTCGAAAGAGGAAGGAAAAACAGACTGGGAGA
GGGAGCTTTTGGCGCAGAGTGCAAATCACTACACAGGCACGCTAGACTGC
CTTCTGGATCTGTGGAGGAGAAAGGGAGTGGCTGGCCTCTTTCAAGGTGT
GGAGTCGAAGCTTTTGCAGACCGTAGTGACGAGTGCATTTATGTTTCTGG
CCTACGAAAACATATTCAAGGTCACCAAGGGTGTGTTAGATGTGACCGAT
AGAAAGGGGCTCGGGGGAAAGCTACATAACGAATGAGACACTAGAGCGCG
CGAAATTGGGTGAATCTCGACAAGGTGGTATACGGGCGATCAGATAAGCA
TCGTGGGATCAAAGTAAAATGTAGGTCAGTGGATGTCGCGAATCCGCGCG
CCGACATCATGAAAGGAAAATAATTCTCCACGCCACCAACTCCC

Coding sequence (CDS) from alignment at CM002459.1:314240..315933-

>rna2408 ID=rna2408|Name=rna2408|organism=Nannochloropsis gaditana|type=CDS|length=2784bp|location=Sequence derived from alignment at CM002459.1:314240..315933- (Nannochloropsis gaditana)
AACACGGCTACCATGGGTCGAGAGAGTTTGATACACGCGCTAGCGGGCGG
TTTGGGATCCGCCCTTGCTCTTGCCTTGACATACCCCTTGGACCAAGTTC
GTACATTTCAACAAGTGAACGACACCCCCGAGGATGACGAGTACATTAAC
CACGGAGGGAGTAGCCCATTATTGAATCAGGAGACTTGCCCGGCGACATC
ATTAGCCCGCTTGGCCTTTCTTTTCCGACCCTATCGGACTGCCTCCGTGA
TGGTTCAAAGACATGGAGCTGGCGCACTGTACCGCGGGATGGTCCCTGTG
CTTATATCGATGGGGCTCAGCAACGCCGTTTTTTTTTTCGTCAGCAACCT
CTTAAAGGCAATACTTTCTCGATACCGACAGCGGACGGGAAAATCCTTGG
GGTATTTCGGCCATCTTGCCACCGGCACGATCGCTGGAGTGTTGAACGTC
GTGCTAACGACTCCACTGTGGGTCGCGGGCATGCGCGCGAAGCTCAGCAG
CGCGCAAGGCTGGAATATTCTGACGATCATGGCCAAAATTTGGAAAGATG
AAGGTGTCATGGCTTTGTGGAGTGGAATGATTCCGTCCCTGCTCCTCGTC
TGCAACCCAGTCCTGCAGCATTTCGTCTACGATGTGCTAAAACGCCGCAC
CCTGGCCACGCGCCGTGTGAGAAGCTCCCAGCTGTCATTTCCCCCCTCCT
CGATGCCTATTGGCAGGTCCGAAGTGACGGGGGCGGCGGTGGCGCTTACG
TCTTTGGAGGCCTTTTACTTCGGTGCGGTGGGAAAATTCGTCGCCACGAT
CGTGTCTTACCCGTTGCAGGTGGCACAGAGTCGGTTGCGGCAGCAGTCTC
AGAAAAGTGAGACCGACGGGAATAATGCTACCACTTCGAAAGAGGAAGGA
AAAACAGACTGGGAGAGGGAGCTTTTGGCGCAGAGTGCAAATCACTACAC
AGGCACGCTAGACTGCCTTCTGGATCTGTGGAGGAGAAAGGGAGTGGCTG
GCCTCTTTCAAGGTGTGGAGTCGAAGCTTTTGCAGACCGTAGTGACGAGT
GCATTTATGTTTCTGGCCTACGAAAACATATTCAAGGTCACCAAGGGTGT
GTTAGATGTGACCGATAGAAAGGGGCTCGGGGGAAAGCTACATAACGAAT
GAATGGCATCAAGAGAGGATAGTGCTGGCGTGAAGACCTGCCCCATGCCT
GTGCGACCTCCGCAGCCGGCTGCGACTTCAGAAATCCTGGAGTCGAACAG
TCCGATCACAGTGCTTTCCATGCCAAGCCCTTTGAGAGACCATGAATTGC
GCCCTCCGGCAGCTAAACTTGCTGTGACGCGACCCGCGCTATTGCCTGAG
GGTAACCACCCCGTGAATGAGAAGTCGTCTCCTGGAGAGCAGAACACGGC
TACCATGGGTCGAGAGAGTTTGATACACGCGCTAGCGGGCGGTTTGGGAT
CCGCCCTTGCTCTTGCCTTGACATACCCCTTGGACCAAGTTCGTACATTT
CAACAAGTGAACGACACCCCCGAGGATGACGAGTACATTAACCACGGAGG
GAGTAGCCCATTATTGAATCAGGAGACTTGCCCGGCGACATCATTAGCCC
GCTTGGCCTTTCTTTTCCGACCCTATCGGACTGCCTCCGTGATGGTTCAA
AGACATGGAGCTGGCGCACTGTACCGCGGGATGGTCCCTGTGCTTATATC
GATGGGGCTCAGCAACGCCGTTTTTTTTTTCGTCAGCAACCTCTTAAAGG
CAATACTTTCTCGATACCGACAGCGGACGGGAAAATCCTTGGGGTATTTC
GGCCATCTTGCCACCGGCACGATCGCTGGAGTGTTGAACGTCGTGCTAAC
GACTCCACTGTGGGTCGCGGGCATGCGCGCGAAGCTCAGCAGCGCGCAAG
GCTGGAATATTCTGACGATCATGGCCAAAATTTGGAAAGATGAAGGTGTC
ATGGCTTTGTGGAGTGGAATGATTCCGTCCCTGCTCCTCGTCTGCAACCC
AGTCCTGCAGCATTTCGTCTACGATGTGCTAAAACGCCGCACCCTGGCCA
CGCGCCGTGTGAGAAGCTCCCAGCTGTCATTTCCCCCCTCCTCGATGCCT
ATTGGCAGGTCCGAAGTGACGGGGGCGGCGGTGGCGCTTACGTCTTTGGA
GGCCTTTTACTTCGGTGCGGTGGGAAAATTCGTCGCCACGATCGTGTCTT
ACCCGTTGCAGGTGGCACAGAGTCGGTTGCGGCAGCAGTCTCAGAAAAGT
GAGACCGACGGGAATAATGCTACCACTTCGAAAGAGGAAGGAAAAACAGA
CTGGGAGAGGGAGCTTTTGGCGCAGAGTGCAAATCACTACACAGGCACGC
TAGACTGCCTTCTGGATCTGTGGAGGAGAAAGGGAGTGGCTGGCCTCTTT
CAAGGTGTGGAGTCGAAGCTTTTGCAGACCGTAGTGACGAGTGCATTTAT
GTTTCTGGCCTACGAAAACATATTCAAGGTCACCAAGGGTGTGTTAGATG
TGACCGATAGAAAGGGGCTCGGGGGAAAGCTACATAACGAATGAATGGCA
TCAAGAGAGGATAGTGCTGGCGTGAAGACCTGCCCCATGCCTGTGCGACC
TCCGCAGCCGGCTGCGACTTCAGAAATCCTGGAGTCGAACAGTCCGATCA
CAGTGCTTTCCATGCCAAGCCCTTTGAGAGACCATGAATTGCGCCCTCCG
GCAGCTAAACTTGCTGTGACGCGACCCGCGCTATTGCCTGAGGGTAACCA
CCCCGTGAATGAGAAGTCGTCTCCTGGAGAGCAG

Synonyms

Publications