rna2403, rna2403 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2403
Unique Name	rna2403
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1904
Alignment location	CM002459.1:301352..302082 +

Link to JBrowse

Properties


Property Name	Value
Product	50s ribosomal protein l20
Orig transcript id	gnl\|cribi\|Naga_100004g36.9208.mrna
Orig protein id	gnl\|cribi\|Naga_100004g36.9208
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:301352..302082 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g36	gene2297	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2403	rna2403-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28277.1	cds2395	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:301352..302082+
coding sequence from alignment at CM002459.1:301352..302082+

mRNA sequence

>rna2403 ID=rna2403|Name=rna2403|organism=Nannochloropsis gaditana|type=mRNA|length=1904bp
TGCTCCGCAGAAAGTGTGGATAAAGTAATTGGTCTGGTTACGTCTTTGCT
CTTATTTCCTGAAGAATCGTACTGCTATCAAGGTTGCCTAGGGAATGCTC
CAAGACGCTGGTACGAGAGCGTCAGAGCCTCGCCTCCTGTTGGAAAGATT
CCTAGCACCTGAGTGTACTATCTGGATATCAATTACACGATTGTAGTCAG
TTGCATGCCTTGAGGAAGGTAATATTGTCGACTCGCCCATAAGCCCTTCT
AGGTAGCGGCAACGGTGCATGGGCGATGCCGGCGATTTGAAATACCTCGT
GTTCCCATTTACCCTAACCGTGGACAATCACGTCGACGACATGAGGACAC
CTCAATTTTGACATATCATAACGCTATCCTGTACTACGAAGGGCGGTTCT
CCTCTCGAGATTATTTTCGGTGGAAAGATTTGAAAAGGGAGAGTGCCGTG
TTGGGTGGTCGTGATGGAAAAGGGAACAATTAGGCCGTCACATACCTATT
ATATGACTACGTGCGCAGATGCAGACTCGCATGGCACCTCGCGACGTTTG
CATTTTATTTGACATATGTGGCGTTCTTACTCCTATGTCATATACCACCC
AACATATCCATGGTGTACCCAGGCTCGAGCGCGGGTGTAGACTTCAGATC
TGCGGCTCTGATGCCCGTATTAATCTGCATTGACACCGCCGGACCCCAAT
TTTGCTACGCCCACCGACACAAATATTAAAGGACACCTTATCCTGCTTGA
GAAATGTCATCGGCCGTGGTCCTGGCAACCGCAGGCTACGATCATAAGAT
CCGATTCTGGGAGGCTCCTACGGGTGTCTGTGCCCGCTCTATTCGGTATC
CCGACTCGCAGGTCAATTGCCTTCAAATCACGCCCGATAAACAATTCCTG
GCAGCAGGTGGGAACCCTCACGTACGGCTATTTGAGGTAGGTGGAAATGC
CAATCCCAACCCAGTGGTTAGCTACGAAGGACATGTGGGAAATGTCATGG
CGGTTGGGTTTCAGCAGGACGGCAAATGGCTGTACACAGCTTCCGAGGAT
GGAACCGTCAAATTGTGGGATACTAGAGCTTCTGGATGTCAGCGAACGTT
GGAGAACTCAACCGCGACAAGCTCTAGCAGCAGTGGGGGGGGAGGCGGAG
CTGGCGGGGCCAGTGGAAGCGGGCACCATCATACCTCCATGGTGGCAGTC
AACTCTGTAGTACTGCATCCTAATCAAGCGGAGCTTGTCACGGGAGATCA
AGAGGGTCGCGTTCGAGTATGGGATTTAGGAAGCAACCGCTGCGTCCATG
AGACACTCCCTGAAGGTAGCGTCCCCGTACGCTCTGTCTCAGTTGCGAAT
GACGCATCTTTGATTGCCGCAGGAAATAATCAGGCTAATTTATACGTCTG
GCACTATCAGGAAGGCTCTCCCGATGCCTACTTCAGCCGACCTGCGCATG
TTCAGCCCGTGAAAACGCACGCACGATTCCTACTGAAATGTGCTTTTTCT
CCTGATTCTCAACGCTTGGTCACTACCTCAGCAGATAAAACCGCCAAGCT
TTGGAACGTAAGAAAGTGGGAAGTTGAGCATACACTTAAAGATCATCAGC
GGTGGGTATGGGATGCAGCTTTTTCAGCGGACTCGTCGTATCTAGTCACA
GCTTGCTCAGATCACCATCCCCGACTGTGGGATTTGAGGACAGGAGACCT
TGTCCGGACTTACCAAGGCTCCAACTTAGCAGTAACTTGTGTGGCACTGA
ACGATGCACAGATATAGAGAGGAAGGAGTGGATGATGTTGTTATTTATTT
GATAAATGGCCTGCGGGGCTTCTGTAAATACTTTGCTCATTTGCAAGAAG
AGGCACACTGAATTGCCAAAAGAACAACCGGGCACAAGAGCCCAAGAAAC
ACGA

protein sequence of rna2403

>rna2403-protein ID=rna2403-protein|Name=rna2403|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MMSSWLGSLVLRRAATVATIRAGSQPDAVYGGIASIPCLLKGPFLQPSRS
LANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRS
LWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAV
VETVRSQR

mRNA from alignment at CM002459.1:301352..302082+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2403 ID=rna2403|Name=rna2403|organism=Nannochloropsis gaditana|type=mRNA|length=731bp|location=Sequence derived from alignment at CM002459.1:301352..302082+ (Nannochloropsis gaditana)
CGCCCGACGACGAATTTCAACACGTATATCTTGCCAACTCCAGGTCAATT
GATCGTCACACCAAATAGTGTGCACAACCTCGATGCCAACCAAACACTAC
TCATTATCCTTTTTGAACCTGCTCGGggtcccgctctctcctcattcccc
tctcctgctctgCTTTCCTAAGCCCTCtagccctgctcctccattATGAT
GTCTTCGTGGCTGGGTAGTCTCGTATTGCGTCGCGCCGCCACGGTGGCCA
CTATACGGGCGGGTTCACAACCTGACGCTGTGTATGGTGGAATTGCTTCA
ATCCCCTGCCTTTTGAAAGGCCCCTTTCTTCAACCATCGCGGTCCCTGGC
CAACCATCGGCATAAGAAAATCGTCAAAATGGCAAAAGGCTACCGAGGAC
GGACCAATTGCTTTCGTATTGCAGTGCAACGTGTCGAAAAAGCATTGCAG
TACGCATATCGAGACCGTAAAGTTAAAAAGAGGGAATTCCGCTCCCTCTG
GATTCAACGGATTGGTGCCGCTGTCCAACAGTACGGCATGAACTACTCCC
GCTTTATCCCTGGATTGCGGCGTGCAAACATCACACTCAATCGCAAGGTT
CTGGCAGACCTGGCGGTTTCGGAACCTTATTCATTCAAAGCGGTTGTTGA
GACTGTTCGAAGCCAGAGATGACGCGGAGATCGGGACCTGACCATGTACA
TGAAAAGAACAAAGACAACAGCAATAGCACT

Coding sequence (CDS) from alignment at CM002459.1:301352..302082+

>rna2403 ID=rna2403|Name=rna2403|organism=Nannochloropsis gaditana|type=CDS|length=477bp|location=Sequence derived from alignment at CM002459.1:301352..302082+ (Nannochloropsis gaditana)
ATGATGTCTTCGTGGCTGGGTAGTCTCGTATTGCGTCGCGCCGCCACGGT
GGCCACTATACGGGCGGGTTCACAACCTGACGCTGTGTATGGTGGAATTG
CTTCAATCCCCTGCCTTTTGAAAGGCCCCTTTCTTCAACCATCGCGGTCC
CTGGCCAACCATCGGCATAAGAAAATCGTCAAAATGGCAAAAGGCTACCG
AGGACGGACCAATTGCTTTCGTATTGCAGTGCAACGTGTCGAAAAAGCAT
TGCAGTACGCATATCGAGACCGTAAAGTTAAAAAGAGGGAATTCCGCTCC
CTCTGGATTCAACGGATTGGTGCCGCTGTCCAACAGTACGGCATGAACTA
CTCCCGCTTTATCCCTGGATTGCGGCGTGCAAACATCACACTCAATCGCA
AGGTTCTGGCAGACCTGGCGGTTTCGGAACCTTATTCATTCAAAGCGGTT
GTTGAGACTGTTCGAAGCCAGAGATGA

Synonyms

Publications