EWM28277.1, cds2395 (CDS) Nannochloropsis gaditana

Overview
NameEWM28277.1
Unique Namecds2395
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:301547..302023 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28277.1
Product50s ribosomal protein l20
Orig transcript idgnl|cribi|Naga_100004g36.9208.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:301547..302023 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR005813Ribosomal_L20
Homology
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|585110622|gb|EWM28277.1| (50s ribosomal protein l20 [Nannochloropsis gaditana])

HSP 1 Score: 323.939 bits (829), Expect = 3.654e-112
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MMSSWLGSLVLRRAATVATIRAGSQPDAVYGGIASIPCLLKGPFLQPSRSLANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQR 158
            MMSSWLGSLVLRRAATVATIRAGSQPDAVYGGIASIPCLLKGPFLQPSRSLANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQR
Sbjct:    1 MMSSWLGSLVLRRAATVATIRAGSQPDAVYGGIASIPCLLKGPFLQPSRSLANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQR 158          
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|298712796|emb|CBJ48761.1| (50S ribosomal protein L20P [Ectocarpus siliculosus])

HSP 1 Score: 153.68 bits (387), Expect = 1.625e-45
Identity = 73/106 (68.87%), Postives = 93/106 (87.74%), Query Frame = 0
Query:   53 NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157
            NHRHKKI+K+AKGYRGR+ + F+IA+QRVEKALQ AYRDRK KKREFR LWI+RI A V+Q+GM YS F+   R+A++ LNRKVLA++AV+EPYSF+AVVETV+++
Sbjct:    5 NHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 110          
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|1082292134|gb|OFW80991.1| (50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_34] >gi|1082299231|gb|OFW85575.1| 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_40_8] >gi|1082316675|gb|OFW95008.1| 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26] >gi|1082350369|gb|OFX10544.1| 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_02_FULL_40_19] >gi|1082352113|gb|OFX12091.1| 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_12_FULL_40_11])

HSP 1 Score: 150.214 bits (378), Expect = 4.161e-44
Identity = 69/103 (66.99%), Postives = 89/103 (86.41%), Query Frame = 0
Query:   55 RHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRS 156
            RHKKI+KMAKGYRGR  NCFR+A+++VEKA+QYAYRDRKV+KR+FRSLWIQRI AAV+++G+ YSRFI GL+ A I L+RKVL+DLA+ EP +F  +VE  ++
Sbjct:   13 RHKKILKMAKGYRGRAKNCFRVAIEKVEKAMQYAYRDRKVRKRDFRSLWIQRINAAVREHGLIYSRFISGLKAAQIDLDRKVLSDLAIREPETFGKIVEKAKA 115          
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|796859467|ref|WP_045797523.1| (50S ribosomal protein L20 [Orientia chuto] >gi|788085711|gb|KJV55200.1| ribosomal protein L20 [Orientia chuto str. Fuller])

HSP 1 Score: 149.058 bits (375), Expect = 1.382e-43
Identity = 70/110 (63.64%), Postives = 92/110 (83.64%), Query Frame = 0
Query:   47 PSRSLANHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
             S  ++ +RHKKI+K+AKGYRGR  NCFRIA+Q+VEKALQY+YRDR+ +KR+FR+LWIQRI AAV+QYG+ YS+FI GL++ANIT++RKV+ADLAV    SF  +VE  +
Sbjct:    5 KSGKVSKNRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYGITYSQFISGLKQANITIDRKVMADLAVHNSDSFLHLVELTK 114          
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|740817062|ref|WP_038602345.1| (50S ribosomal protein L20 [Rickettsiales bacterium Ac37b] >gi|675339599|gb|AIL64909.1| Ribosomal protein L20 [Rickettsiales bacterium Ac37b])

HSP 1 Score: 148.673 bits (374), Expect = 1.864e-43
Identity = 68/103 (66.02%), Postives = 92/103 (89.32%), Query Frame = 0
Query:   55 RHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRS 156
            RHKKI+K+AKGYRGR+ NC+RIA+++VEKAL+YAYRDR+ +KR+FR+LWIQRI AAV++YG+ YSRFI G+ ++ IT++RKVLADLAV EP +FK+VVE  ++
Sbjct:   13 RHKKILKLAKGYRGRSKNCYRIAIEKVEKALRYAYRDRRNRKRDFRALWIQRINAAVREYGLVYSRFIDGINKSGITMDRKVLADLAVREPEAFKSVVEQAKA 115          
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|799013388|ref|WP_045912119.1| (50S ribosomal protein L20 [Orientia tsutsugamushi] >gi|788088232|gb|KJV57603.1| ribosomal protein L20 [Orientia tsutsugamushi str. Karp] >gi|788120830|gb|KJV88894.1| ribosomal protein L20 [Orientia tsutsugamushi str. UT76] >gi|788129251|gb|KJV97200.1| ribosomal protein L20 [Orientia tsutsugamushi str. UT76])

HSP 1 Score: 148.673 bits (374), Expect = 2.064e-43
Identity = 70/103 (67.96%), Postives = 88/103 (85.44%), Query Frame = 0
Query:   54 HRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
            +RHKKI+K+AKGYRGR  NCFRIA+Q+VEKALQY+YRDR+ +KR+FR+LWIQRI AAV+QY M YS+FI GL+RANIT++RKV+ADLAV    SF  +VE  +
Sbjct:   12 NRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDMTYSQFINGLKRANITVDRKVMADLAVHNADSFLHLVELTK 114          
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|740680012|ref|WP_038465301.1| (50S ribosomal protein L20 [Candidatus Paracaedibacter acanthamoebae] >gi|674213844|gb|AIK96685.1| 50S ribosomal protein L20 [Candidatus Paracaedibacter acanthamoebae])

HSP 1 Score: 147.517 bits (371), Expect = 5.481e-43
Identity = 71/109 (65.14%), Postives = 89/109 (81.65%), Query Frame = 0
Query:   49 RSLANH-RHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
            R +  H RHKKI+KMAKGYRGR+  CFR A+QRVEK LQYAYRDR+ KKR FR+LWIQRI A V++YG+NYS F+ GL +A I ++RKVLA LA+S P +FK++VETV+
Sbjct:    6 RGVTTHARHKKIIKMAKGYRGRSGTCFRPAIQRVEKGLQYAYRDRRAKKRTFRALWIQRINAGVREYGLNYSTFMGGLIKAGIDMDRKVLAGLAMSNPETFKSIVETVQ 114          
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|497988117|ref|WP_010302273.1| (50S ribosomal protein L20 [Candidatus Odyssella thessalonicensis])

HSP 1 Score: 147.517 bits (371), Expect = 5.982e-43
Identity = 71/109 (65.14%), Postives = 91/109 (83.49%), Query Frame = 0
Query:   49 RSLANH-RHKKIVKMAKGYRGRTN-CFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
            R +  H RHKKI+KMAKGYRGR++ CFR A+QRVEK LQYAYRDR+VKKR FR+LWIQRI A V++YG+NYS F+ GL +A I ++RK+LA LA+S P +FK++VETV+
Sbjct:    6 RGVTTHARHKKIIKMAKGYRGRSSTCFRPAIQRVEKGLQYAYRDRRVKKRNFRALWIQRINAGVREYGLNYSTFMGGLIKAGINVDRKILAGLAMSYPETFKSIVETVQ 114          
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|1113384088|gb|OJW47248.1| (50S ribosomal protein L20 [Alphaproteobacteria bacterium 41-28])

HSP 1 Score: 146.747 bits (369), Expect = 1.272e-42
Identity = 66/99 (66.67%), Postives = 86/99 (86.87%), Query Frame = 0
Query:   55 RHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVE 152
            RHKK++K+AKGYRGR+ NCFRIA+QRVEKALQYAYRDR+ +KR+FR LWIQRI A  +++G+ YS+FI GL +A I ++RKVLADLAV EP +FK++V+
Sbjct:   13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111          
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|799026516|ref|WP_045915985.1| (50S ribosomal protein L20 [Orientia tsutsugamushi] >gi|788085900|gb|KJV55377.1| ribosomal protein L20 [Orientia tsutsugamushi str. Kato PP])

HSP 1 Score: 146.747 bits (369), Expect = 1.367e-42
Identity = 69/103 (66.99%), Postives = 88/103 (85.44%), Query Frame = 0
Query:   54 HRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
            +RHKKI+K+AKGYRGR  NCFRIA+Q+VEKALQY+YRDR+ +KR+FR+LWIQRI AAV+QY + YS+FI GL+RANIT++RKV+ADLAV    SF  +VE  +
Sbjct:   12 NRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDITYSQFINGLKRANITVDRKVMADLAVHNADSFVHLVELTK 114          
The following BLAST results are available for this feature:
BLAST of EWM28277.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110622|gb|EWM28277.1|3.654e-112100.0050s ribosomal protein l20 [Nannochloropsis gaditan... [more]
gi|298712796|emb|CBJ48761.1|1.625e-4568.8750S ribosomal protein L20P [Ectocarpus siliculosus... [more]
gi|1082292134|gb|OFW80991.1|4.161e-4466.9950S ribosomal protein L20 [Alphaproteobacteria bac... [more]
gi|796859467|ref|WP_045797523.1|1.382e-4363.6450S ribosomal protein L20 [Orientia chuto] >gi|788... [more]
gi|740817062|ref|WP_038602345.1|1.864e-4366.0250S ribosomal protein L20 [Rickettsiales bacterium... [more]
gi|799013388|ref|WP_045912119.1|2.064e-4367.9650S ribosomal protein L20 [Orientia tsutsugamushi]... [more]
gi|740680012|ref|WP_038465301.1|5.481e-4365.1450S ribosomal protein L20 [Candidatus Paracaedibac... [more]
gi|497988117|ref|WP_010302273.1|5.982e-4365.1450S ribosomal protein L20 [Candidatus Odyssella th... [more]
gi|1113384088|gb|OJW47248.1|1.272e-4266.6750S ribosomal protein L20 [Alphaproteobacteria bac... [more]
gi|799026516|ref|WP_045915985.1|1.367e-4266.9950S ribosomal protein L20 [Orientia tsutsugamushi]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2403rna2403Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications