EWM28277.1, cds2395 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|585110622|gb|EWM28277.1| (50s ribosomal protein l20 [Nannochloropsis gaditana]) HSP 1 Score: 323.939 bits (829), Expect = 3.654e-112 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query: 1 MMSSWLGSLVLRRAATVATIRAGSQPDAVYGGIASIPCLLKGPFLQPSRSLANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQR 158
MMSSWLGSLVLRRAATVATIRAGSQPDAVYGGIASIPCLLKGPFLQPSRSLANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQR
Sbjct: 1 MMSSWLGSLVLRRAATVATIRAGSQPDAVYGGIASIPCLLKGPFLQPSRSLANHRHKKIVKMAKGYRGRTNCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQR 158
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|298712796|emb|CBJ48761.1| (50S ribosomal protein L20P [Ectocarpus siliculosus]) HSP 1 Score: 153.68 bits (387), Expect = 1.625e-45 Identity = 73/106 (68.87%), Postives = 93/106 (87.74%), Query Frame = 0
Query: 53 NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157
NHRHKKI+K+AKGYRGR+ + F+IA+QRVEKALQ AYRDRK KKREFR LWI+RI A V+Q+GM YS F+ R+A++ LNRKVLA++AV+EPYSF+AVVETV+++
Sbjct: 5 NHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 110
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|1082292134|gb|OFW80991.1| (50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_34] >gi|1082299231|gb|OFW85575.1| 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_40_8] >gi|1082316675|gb|OFW95008.1| 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_01_FULL_40_26] >gi|1082350369|gb|OFX10544.1| 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_02_FULL_40_19] >gi|1082352113|gb|OFX12091.1| 50S ribosomal protein L20 [Alphaproteobacteria bacterium RIFCSPLOWO2_12_FULL_40_11]) HSP 1 Score: 150.214 bits (378), Expect = 4.161e-44 Identity = 69/103 (66.99%), Postives = 89/103 (86.41%), Query Frame = 0
Query: 55 RHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRS 156
RHKKI+KMAKGYRGR NCFR+A+++VEKA+QYAYRDRKV+KR+FRSLWIQRI AAV+++G+ YSRFI GL+ A I L+RKVL+DLA+ EP +F +VE ++
Sbjct: 13 RHKKILKMAKGYRGRAKNCFRVAIEKVEKAMQYAYRDRKVRKRDFRSLWIQRINAAVREHGLIYSRFISGLKAAQIDLDRKVLSDLAIREPETFGKIVEKAKA 115
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|796859467|ref|WP_045797523.1| (50S ribosomal protein L20 [Orientia chuto] >gi|788085711|gb|KJV55200.1| ribosomal protein L20 [Orientia chuto str. Fuller]) HSP 1 Score: 149.058 bits (375), Expect = 1.382e-43 Identity = 70/110 (63.64%), Postives = 92/110 (83.64%), Query Frame = 0
Query: 47 PSRSLANHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
S ++ +RHKKI+K+AKGYRGR NCFRIA+Q+VEKALQY+YRDR+ +KR+FR+LWIQRI AAV+QYG+ YS+FI GL++ANIT++RKV+ADLAV SF +VE +
Sbjct: 5 KSGKVSKNRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYGITYSQFISGLKQANITIDRKVMADLAVHNSDSFLHLVELTK 114
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|740817062|ref|WP_038602345.1| (50S ribosomal protein L20 [Rickettsiales bacterium Ac37b] >gi|675339599|gb|AIL64909.1| Ribosomal protein L20 [Rickettsiales bacterium Ac37b]) HSP 1 Score: 148.673 bits (374), Expect = 1.864e-43 Identity = 68/103 (66.02%), Postives = 92/103 (89.32%), Query Frame = 0
Query: 55 RHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRS 156
RHKKI+K+AKGYRGR+ NC+RIA+++VEKAL+YAYRDR+ +KR+FR+LWIQRI AAV++YG+ YSRFI G+ ++ IT++RKVLADLAV EP +FK+VVE ++
Sbjct: 13 RHKKILKLAKGYRGRSKNCYRIAIEKVEKALRYAYRDRRNRKRDFRALWIQRINAAVREYGLVYSRFIDGINKSGITMDRKVLADLAVREPEAFKSVVEQAKA 115
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|799013388|ref|WP_045912119.1| (50S ribosomal protein L20 [Orientia tsutsugamushi] >gi|788088232|gb|KJV57603.1| ribosomal protein L20 [Orientia tsutsugamushi str. Karp] >gi|788120830|gb|KJV88894.1| ribosomal protein L20 [Orientia tsutsugamushi str. UT76] >gi|788129251|gb|KJV97200.1| ribosomal protein L20 [Orientia tsutsugamushi str. UT76]) HSP 1 Score: 148.673 bits (374), Expect = 2.064e-43 Identity = 70/103 (67.96%), Postives = 88/103 (85.44%), Query Frame = 0
Query: 54 HRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
+RHKKI+K+AKGYRGR NCFRIA+Q+VEKALQY+YRDR+ +KR+FR+LWIQRI AAV+QY M YS+FI GL+RANIT++RKV+ADLAV SF +VE +
Sbjct: 12 NRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDMTYSQFINGLKRANITVDRKVMADLAVHNADSFLHLVELTK 114
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|740680012|ref|WP_038465301.1| (50S ribosomal protein L20 [Candidatus Paracaedibacter acanthamoebae] >gi|674213844|gb|AIK96685.1| 50S ribosomal protein L20 [Candidatus Paracaedibacter acanthamoebae]) HSP 1 Score: 147.517 bits (371), Expect = 5.481e-43 Identity = 71/109 (65.14%), Postives = 89/109 (81.65%), Query Frame = 0
Query: 49 RSLANH-RHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
R + H RHKKI+KMAKGYRGR+ CFR A+QRVEK LQYAYRDR+ KKR FR+LWIQRI A V++YG+NYS F+ GL +A I ++RKVLA LA+S P +FK++VETV+
Sbjct: 6 RGVTTHARHKKIIKMAKGYRGRSGTCFRPAIQRVEKGLQYAYRDRRAKKRTFRALWIQRINAGVREYGLNYSTFMGGLIKAGIDMDRKVLAGLAMSNPETFKSIVETVQ 114
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|497988117|ref|WP_010302273.1| (50S ribosomal protein L20 [Candidatus Odyssella thessalonicensis]) HSP 1 Score: 147.517 bits (371), Expect = 5.982e-43 Identity = 71/109 (65.14%), Postives = 91/109 (83.49%), Query Frame = 0
Query: 49 RSLANH-RHKKIVKMAKGYRGRTN-CFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
R + H RHKKI+KMAKGYRGR++ CFR A+QRVEK LQYAYRDR+VKKR FR+LWIQRI A V++YG+NYS F+ GL +A I ++RK+LA LA+S P +FK++VETV+
Sbjct: 6 RGVTTHARHKKIIKMAKGYRGRSSTCFRPAIQRVEKGLQYAYRDRRVKKRNFRALWIQRINAGVREYGLNYSTFMGGLIKAGINVDRKILAGLAMSYPETFKSIVETVQ 114
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|1113384088|gb|OJW47248.1| (50S ribosomal protein L20 [Alphaproteobacteria bacterium 41-28]) HSP 1 Score: 146.747 bits (369), Expect = 1.272e-42 Identity = 66/99 (66.67%), Postives = 86/99 (86.87%), Query Frame = 0
Query: 55 RHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVE 152
RHKK++K+AKGYRGR+ NCFRIA+QRVEKALQYAYRDR+ +KR+FR LWIQRI A +++G+ YS+FI GL +A I ++RKVLADLAV EP +FK++V+
Sbjct: 13 RHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111
BLAST of EWM28277.1 vs. NCBI_GenBank
Match: gi|799026516|ref|WP_045915985.1| (50S ribosomal protein L20 [Orientia tsutsugamushi] >gi|788085900|gb|KJV55377.1| ribosomal protein L20 [Orientia tsutsugamushi str. Kato PP]) HSP 1 Score: 146.747 bits (369), Expect = 1.367e-42 Identity = 69/103 (66.99%), Postives = 88/103 (85.44%), Query Frame = 0
Query: 54 HRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVR 155
+RHKKI+K+AKGYRGR NCFRIA+Q+VEKALQY+YRDR+ +KR+FR+LWIQRI AAV+QY + YS+FI GL+RANIT++RKV+ADLAV SF +VE +
Sbjct: 12 NRHKKILKLAKGYRGRAKNCFRIAIQKVEKALQYSYRDRRNRKRQFRALWIQRINAAVRQYDITYSQFINGLKRANITVDRKVMADLAVHNADSFVHLVELTK 114 The following BLAST results are available for this feature:
BLAST of EWM28277.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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