rna2402, rna2402 (mRNA) Nannochloropsis gaditana

Overview
Namerna2402
Unique Namerna2402
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1820
Alignment locationCM002459.1:299298..301201 +

Link to JBrowse

Properties
Property NameValue
ProductWD40 repeat containing protein
Orig transcript idgnl|cribi|Naga_100004g35.9144.mrna
Orig protein idgnl|cribi|Naga_100004g35.9144
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:299298..301201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g35gene2296Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2402rna2402-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28213.1cds2394Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2402 ID=rna2402|Name=rna2402|organism=Nannochloropsis gaditana|type=mRNA|length=1820bp
GGGAACACGAGGTATTTCAAATCGCCGGCATCGCCCATGCACCGTTGCCG
CTACCTAGAAGGGCTTATGGGCGAGTCGACAATATTACCTTCCTCAAGGC
ATGCAACTGACTACAATCGTGTAATTGATATCCAGATAGTACACTCAGGT
GCTAGGAATCTTTCCAACAGGAGGCGAGGCTCTGACGCTCTCGTACCAGC
GTCTTGGAGCATTCCCTAGGCAACCTTGATAGCAGTACGATTCTTCAGGA
AATAAGAGCAAAGACGTAACCAGACCAATTACTTTATCCACACTTTCTGC
GGAGCACACCATGATATCGCCTAACATATCTCCAAAAGATTTGACGCTTT
ATGAGAGATTGCGGCGACTTGATTATCATCCCAAGACAAAAGATGATTTC
AAAGTCCGGACGGCTTACGGCGGGGCCACGTCGGTCGTAGCGTTAGCCTG
TATGATATTTCTTTTCTTCACGGAGCTCAAGTATTCCATGGAGAAGGAGA
TTGTGGACCATATGTACGTCAATTCCTCCCGGGATACCCGCCTTTTGTTC
AATTTTAATCTGACCTTTCCGTCCGTGTCGTGCTCACTTTTGAGTGCCGA
CGCCTTGGACCCGTTGGGTAACAAGCAAGAGGGAGTGGAAAGCCACGTAT
TCAAGACTCGTCTCGACTCGATGGGGAATCCGATCGCTGCCAAGACATGG
CATAAGCTTGGGGACACTTTCACGGAGGAAGACTTATTGCTGAAACATGA
GGAAGATAGCAGAGCTCAACTCGAGGAGGAAGAGGAGCAGGAGGAGAAGT
TGGGGGAAGAAGGAGATGGACAACAAGTTGGAGAGGATGGAAAGCCGAGA
GGACGAAACTTGAAACGGCGAAAGTGCGGGGACTGCTACGGCGCCGGGGA
GCCCGGACAATGCTGCAACACATGTGCCGAAGTCAAGCAGGCCTATGACT
CCAAGGGGTGGGCGTTCATAGGCTTAAATGTAGAGCAATGCAAGCAAGAG
AATCTGCAAGTTTCATTTGGAGACGGGGCGGAGGAGGGCTGCAATATTCA
CGGATCTTTGCTGCTAACGCACGACAGTGGCAACGTGCATTTCGCCCCGG
GCGAGCAACTGCGGCAGTCGGGGGCATTGAATGTCGCCGATTTAGTGACG
TTTACATTCTTACAATTCAATGTCTCCCATGAAATTCACCATCTTTCCCT
TGGCGAAGAGTTCCCAGGATTCCGCTCACCGCTTAGTAACCAAAAACGGA
GCGTCGCGGACGGCTACGGGATGTACCAATATTACTTGAAGGTGGTGCCC
ACTATTTACAAGCATTTGAGTCAACCTCCTACAGTTTCCAATCAATACGC
AGTCTCGGAGCACATTCGGCATATAAATCCGGGAAGCAATCGAGGGCTAC
CTGGGGTGTGGTTTTTCTACGACACCTCACCCGTGCATGTGGAATTCCAA
GAGCGGCGGAAAGGGCTTTTACCATTTTTAACCAGCGTCTGTGCCATTGT
TGGCGGCGTGTTTTCCGTTTTTGGGGTCGTCGATGGAGTGGTTCATAACT
TGATGAAAAACGGGTTGCCTACTGGGAAGATGGGAGGGGCTCCGGGAAGT
TAAAGACTCTTGACACAACAAGAAAGAAAATGGAAGGTAGCATTTAGAGT
TGTGTATGAAAGATATAAAGAGAGTACACGGACCTGATAAGTGTATCGTT
GCGTCATGCAAAGCGAAGGGGGCGGTAGCAAAGCGCAAGGCAAGGCAAGC
GGGTCTTACCAGTCCGTGGGTCATGCGTTCTTGGGAAAGAAAAATACATG
CAGTGAAACCATAAAATGGA
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protein sequence of rna2402

>rna2402-protein ID=rna2402-protein|Name=rna2402|organism=Nannochloropsis gaditana|type=polypeptide|length=337bp
MSSAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLA
AGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDG
TVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVN
SVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVAND
ASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSP
DSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTA
CSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI
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mRNA from alignment at CM002459.1:299298..301201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2402 ID=rna2402|Name=rna2402|organism=Nannochloropsis gaditana|type=mRNA|length=1904bp|location=Sequence derived from alignment at CM002459.1:299298..301201+ (Nannochloropsis gaditana)
TGCTCCGCAGAAAGTGTGGATAAAGTAATTGGTCTGGTTACGTCTTTGCT
CTTATTTCCTGAAGAATCGTACTGCTATCAAGGTTGCCTAGGGAATGCTC
CAAGACGCTGGTACGAGAGCGTCAGAGCCTCGCCTCCTGTTGGAAAGATT
CCTAGCACCTGAGTGTACTATCTGGATATCAATTACACGATTGTAGTCAG
TTGCATGCCTTGAGGAAGGTAATATTGTCGACTCGCCCATAAGCCCTTCT
AGGTAGCGGCAACGGTGCATGGGCGATGCCGGCGATTTGAAATACCTCGT
GTTCCCATTTACCCTAACCGTGGACAATCACGTCGACGACATGAGGACAC
CTCAATTTTGACATATCATAACGCTATCCTGTACTACGAAGGGCGGTTCT
CCTCTCGAGATTATTTTCGGTGGAAAGATTTGAAAAGGGAGAGTGCCGTG
TTGGGTGGtcgtgatggaaaagggaacAATTAGGCCGTCACATACCTATT
ATATGACTACGTGCGCAGATGCAGACTCGCATGGCACCTCGCGACGTTTG
CATTTTATTTGACATATGTGGCGTTCTTACTCCTATGTCATATACCACCC
AACATATCCATGGTGTACCCAGGCTCGAGCGCGGGTGTAGACTTCAGATC
TGCGGCTCTGATGCCCGTATTAATCTGCATTGACACCGCCGGACCCCAAT
TTTGCTACGCCCACCGACACAAATATTAAAGGACACCTTATCCTGCTTGA
GAAATGTCATCGGCCGTGGTCCTGGCAACCGCAGGCTACGATCATAAGAT
CCGATTCTGGGAGGCTCCTACGGGTGTCTGTGCCCGCTCTATTCGGTATC
CCGACTCGCAGGTCAATTGCCTTCAAATCACGCCCGATAAACAATTCCTG
GCAGCAGGTGGGAACCCTCACGTACGGCTATTTGAGGTAGGTGGAAATGC
CAATCCCAACCCAGTGGTTAGCTACGAAGGACATGTGGGAAATGTCATGG
CGGTTGGGTTTCAGCAGGACGGCAAATGGCTGTACACAGCTTCCGAGGAT
GGAACCGTCAAATTGTGGGATACTAGAGCTTCTGGATGTCAGCGAACGTT
GGAGAACTCAACCGCGACAAGCTCTAGCAGcagtggggggggaggcggag
ctggcgGGGCCAGTGGAAGCGGGCACCATCATACCTCCATGGTGGCAGTC
AACTCTGTAGTACTGCATCCTAATCAAGCGGAGCTTGTCACGGGAGATCA
AGAGGGTCGCGTTCGAGTATGGGATTTAGGAAGCAACCGCTGCGTCCATG
AGACACTCCCTGAAGGTAGCGTCCCCGTACGCTCTGTCTCAGTTGCGAAT
GACGCATCTTTGATTGCCGCAGGAAATAATCAGGCTAATTTATACGTCTG
GCACTATCAGGAAGGCTCTCCCGATGCCTACTTCAGCCGACCTGCGCATG
TTCAGCCCGTGAAAACGCACGCACGATTCCTACTGAAATGTGCTTTTTCT
CCTGATTCTCAACGCTTGGTCACTACCTCAGCAGATAAAACCGCCAAGCT
TTGGAACGTAAGAAAGTGGGAAGTTGAGCATACACTTAAAGATCATCAGC
GGTGGGTATGGGATGCAGCTTTTTCAGCGGACTCGTCGTATCTAGTCACA
GCTTGCTCAGATCACCATCCCCGACTGTGGGATTTGAGGACAGGAGACCT
TGTCCGGACTTACCAAGGCTCCAACTTAGCAGTAACTTGTGTGGCACTGA
ACGATGCACAGATAtagagaggaaggagtggaTGATGTTGTTATTTATTT
GATAAATGGCCTGCGGGGCTTCTGTAAATACTTTGCTCATTTGCAAGAAG
AGGCACACTGAATTGCCAAAAGAACAACCGGGCACAAGAGCCCAAGAAAC
ACGA
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Coding sequence (CDS) from alignment at CM002459.1:299298..301201+

>rna2402 ID=rna2402|Name=rna2402|organism=Nannochloropsis gaditana|type=CDS|length=1014bp|location=Sequence derived from alignment at CM002459.1:299298..301201+ (Nannochloropsis gaditana)
ATGTCATCGGCCGTGGTCCTGGCAACCGCAGGCTACGATCATAAGATCCG
ATTCTGGGAGGCTCCTACGGGTGTCTGTGCCCGCTCTATTCGGTATCCCG
ACTCGCAGGTCAATTGCCTTCAAATCACGCCCGATAAACAATTCCTGGCA
GCAGGTGGGAACCCTCACGTACGGCTATTTGAGGTAGGTGGAAATGCCAA
TCCCAACCCAGTGGTTAGCTACGAAGGACATGTGGGAAATGTCATGGCGG
TTGGGTTTCAGCAGGACGGCAAATGGCTGTACACAGCTTCCGAGGATGGA
ACCGTCAAATTGTGGGATACTAGAGCTTCTGGATGTCAGCGAACGTTGGA
GAACTCAACCGCGACAAGCTCTAGCAGcagtggggggggaggcggagctg
gcgGGGCCAGTGGAAGCGGGCACCATCATACCTCCATGGTGGCAGTCAAC
TCTGTAGTACTGCATCCTAATCAAGCGGAGCTTGTCACGGGAGATCAAGA
GGGTCGCGTTCGAGTATGGGATTTAGGAAGCAACCGCTGCGTCCATGAGA
CACTCCCTGAAGGTAGCGTCCCCGTACGCTCTGTCTCAGTTGCGAATGAC
GCATCTTTGATTGCCGCAGGAAATAATCAGGCTAATTTATACGTCTGGCA
CTATCAGGAAGGCTCTCCCGATGCCTACTTCAGCCGACCTGCGCATGTTC
AGCCCGTGAAAACGCACGCACGATTCCTACTGAAATGTGCTTTTTCTCCT
GATTCTCAACGCTTGGTCACTACCTCAGCAGATAAAACCGCCAAGCTTTG
GAACGTAAGAAAGTGGGAAGTTGAGCATACACTTAAAGATCATCAGCGGT
GGGTATGGGATGCAGCTTTTTCAGCGGACTCGTCGTATCTAGTCACAGCT
TGCTCAGATCACCATCCCCGACTGTGGGATTTGAGGACAGGAGACCTTGT
CCGGACTTACCAAGGCTCCAACTTAGCAGTAACTTGTGTGGCACTGAACG
ATGCACAGATAtag
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Synonyms
Publications