EWM28213.1, cds2394 (CDS) Nannochloropsis gaditana

Overview
NameEWM28213.1
Unique Namecds2394
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:300051..301064 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28213.1
ProductWD40 repeat containing protein
Orig transcript idgnl|cribi|Naga_100004g35.9144.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:300051..301064 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR019775WD40_repeat_CS
IPR015943WD40/YVTN_repeat-like_dom
IPR001680WD40_repeat
IPR020472G-protein_beta_WD-40_rep
Homology
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|585110558|gb|EWM28213.1| (WD40 repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0
Query:    1 MSSAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI 337
            MSSAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI
Sbjct:    1 MSSAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI 337          
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|552820858|ref|XP_005845694.1| (hypothetical protein CHLNCDRAFT_36454 [Chlorella variabilis] >gi|307105342|gb|EFN53592.1| hypothetical protein CHLNCDRAFT_36454 [Chlorella variabilis])

HSP 1 Score: 361.303 bits (926), Expect = 1.226e-121
Identity = 178/337 (52.82%), Postives = 220/337 (65.28%), Query Frame = 0
Query:    1 MSSAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI 337
            M S+VVLATAGYDH IRFWEA +G+C R+++Y DSQVN L+IT DK  +AA GNPH+RL+EV  N NP P++SY+GH  NV AVGFQ+DGKW+Y+ SEDGTVK+WD RA GCQR  E                           S  AVN+VVLHPNQ EL++GDQ G +RVWDL +N C  E +PE    VRS++VA D SL+ A NN    YVW    GS       P H   ++ H  ++LKC  SPD ++L TTS+DKT KLWN+  + ++ TL  HQRWVWD  FS D++YLVTA SD   RLWDL TGD +R Y G + A T  ALND+ I
Sbjct:    1 MGSSVVLATAGYDHTIRFWEATSGICYRTLQYADSQVNKLEITADKTLIAAAGNPHIRLYEVNSN-NPQPIISYDGHTSNVTAVGFQKDGKWMYSGSEDGTVKIWDLRAPGCQREYE---------------------------SRAAVNTVVLHPNQGELISGDQHGNIRVWDLTANACSCELVPEVGTAVRSLTVAMDGSLVVAANNSGTCYVWRAMRGSYLTTHFEPLH--KLRAHQGYVLKCMLSPDVRQLATTSSDKTVKLWNLDGFTLDRTLAGHQRWVWDCVFSVDAAYLVTASSDCTARLWDLSTGDAIRIYSGHHKACTTCALNDSAI 307          
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|926791647|ref|XP_013904297.1| (G protein beta subunit-like protein [Monoraphidium neglectum] >gi|761975301|gb|KIZ05278.1| G protein beta subunit-like protein [Monoraphidium neglectum])

HSP 1 Score: 353.214 bits (905), Expect = 2.241e-118
Identity = 174/335 (51.94%), Postives = 219/335 (65.37%), Query Frame = 0
Query:    3 SAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI 337
            S+VVLATAGYDH IRFWEA +G+C R+++Y DSQVN L+IT +KQ++AA GN  VRLFEV  N +P PV+SY+GH GNV AVGFQ+D KW+YT  EDGTV++WD R  GCQR                            + S  AVN+VVLHPNQ EL++GDQ G +RVWDL +N C  E +PE    VRS++VA D S+I AGNN    YVW    G+       P H   ++ H   +LKC  SPD Q+L TTS+DKT KLWN+  + ++ TL  H RWVWDA FS D++YLVTA SD   RLWDL +G+ +RTY G + A+ C ALND+ I
Sbjct:    2 SSVVLATAGYDHTIRFWEATSGICYRTLQYTDSQVNKLEITAEKQYVAAAGNSQVRLFEVNSN-DPQPVMSYDGHAGNVTAVGFQKDSKWMYTGGEDGTVRVWDLRTPGCQR---------------------------EYGSRAAVNTVVLHPNQGELISGDQTGHIRVWDLTANACSCELVPEVGTAVRSLTVALDGSMIVAGNNHGTCYVWRMLRGTTLTTHFEPLH--KLRAHGSHVLKCLISPDVQQLATTSSDKTVKLWNLDGFGLDRTLTGHTRWVWDAVFSVDAAYLVTASSDATARLWDLSSGEAIRTYSGHHKAIVCCALNDSAI 306          
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|673016760|ref|XP_008862341.1| (hypothetical protein H310_01098 [Aphanomyces invadans] >gi|574481544|gb|ETW08536.1| hypothetical protein H310_01098 [Aphanomyces invadans])

HSP 1 Score: 351.288 bits (900), Expect = 1.040e-117
Identity = 174/333 (52.25%), Postives = 213/333 (63.96%), Query Frame = 0
Query:    3 SAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDA 335
            S VVLA+AGYDH IRFWEA TG C R+++YPDSQVNCLQITPDK+++ A GNPH+RLFE+  N NPNPV SY+GH GNV ++GFQ+ GKW+Y+ SEDGT+K+WD RA GCQR  E S                             VNSV LHPNQAEL++ DQ G +RVWDL SN C  +  P+    VR+V ++ DAS + A NN    +V  Y   S   Y  R         H  ++LK   SP++Q L T S+DKT K+WN     + HTL+ HQRWVWD AFSA SSYLVTA SDH  RLWDL TGD +R Y G + A  CVAL+D+
Sbjct:    2 SGVVLASAGYDHTIRFWEAATGTCTRTVKYPDSQVNCLQITPDKKYIVAAGNPHIRLFEINSN-NPNPVRSYDGHSGNVTSIGFQKHGKWMYSGSEDGTIKIWDLRAQGCQRNYECS---------------------------APVNSVTLHPNQAELISADQNGNIRVWDLTSNTCSTKFSPDSENAVRTVDISKDASTLVAANNHGMCFV--YTPKSSQNYVLR----HSWSAHNEYILKARISPNAQYLATCSSDKTVKIWNTVDMTLLHTLQGHQRWVWDCAFSAVSSYLVTASSDHTARLWDLSTGDSIRQYNGHHKAAICVALDDS 300          
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|760445781|ref|XP_011399959.1| (LST8-like protein [Auxenochlorella protothecoides] >gi|675354563|gb|KFM27003.1| LST8-like protein [Auxenochlorella protothecoides])

HSP 1 Score: 350.517 bits (898), Expect = 2.855e-117
Identity = 172/337 (51.04%), Postives = 220/337 (65.28%), Query Frame = 0
Query:    1 MSSAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI 337
            M S+VVLATAGYDH IRFWEA +G+C R++++PDSQVN L+IT DK  +AA GNPHVRLF V  +ANP PV+S++ H  NV AVGFQ+DGKW+YT SEDGTV++WD RA GCQR  E                           S  AVN+VVLHP Q EL++GDQ G +RVWDL +N C  E +PE +V VRS+++A D SL+ A NN    YVW    GS  +    P H   +K H  ++LKCA SPD + L TTS+D+T +LWN+  + +E TL  H RWVWD  FS D++YLVTA +D   RLWDL +G+ +R Y G +  V   ALND+ +
Sbjct:    1 MGSSVVLATAGYDHTIRFWEATSGICYRTLQFPDSQVNKLEITADKTLIAAAGNPHVRLFSVA-SANPQPVLSFDQHSANVTAVGFQKDGKWMYTGSEDGTVRIWDMRAPGCQREYE---------------------------SRAAVNTVVLHPQQGELISGDQHGNIRVWDLTANACSCELVPELNVGVRSLTIAVDGSLMVAANNSGTCYVWRAMRGSGLSTHFEPLH--KLKAHGGYILKCALSPDVRHLATTSSDRTVRLWNLDGFSLERTLTGHSRWVWDCVFSVDAAYLVTAGTDCTARLWDLASGEAIRVYSGHHKGVVACALNDSAV 307          
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|302842255|ref|XP_002952671.1| (hypothetical protein VOLCADRAFT_81959 [Volvox carteri f. nagariensis] >gi|300262015|gb|EFJ46224.1| hypothetical protein VOLCADRAFT_81959 [Volvox carteri f. nagariensis])

HSP 1 Score: 350.132 bits (897), Expect = 3.322e-117
Identity = 171/335 (51.04%), Postives = 219/335 (65.37%), Query Frame = 0
Query:    3 SAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI 337
            S+VVLATAGYDH IRFWEA +G C R+++Y +SQVN L+IT DK  +AA GNP +R+F+V  N +PNP+++Y+GH GNV AVGF +DGKW+Y+  EDGTV++WDTR+  CQRT E                           S  AVNSVVLHPNQ EL++GDQ G +RVWDL ++ C  E +PE    VRS++VA D ++I A NN    YVW    G+       P H   +K H+  +LKC  SPD Q+L TTSADKT KLWN+  + ++ TL  H RWVWD  FS D++YLVTA SD   RLWDL +G+ +RTY G + AV C ALND+ I
Sbjct:    2 SSVVLATAGYDHTIRFWEATSGCCYRTLQYAESQVNKLEITADKTRIAAAGNPQIRVFDVNSN-DPNPLLTYDGHAGNVTAVGFHKDGKWMYSGGEDGTVRVWDTRSQVCQRTYE---------------------------SRAAVNSVVLHPNQGELISGDQTGHIRVWDLTASACSCELVPEIGTAVRSLTVALDGTMIVAANNNGTCYVWRMMRGASLTTHFEPLH--KLKAHSNIILKCLISPDCQQLATTSADKTVKLWNLDGFTLDRTLVGHTRWVWDCVFSVDAAYLVTAASDMTARLWDLSSGEAIRTYSGHHKAVVCCALNDSAI 306          
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|698777612|ref|XP_009821850.1| (hypothetical protein H257_00724 [Aphanomyces astaci] >gi|574123975|gb|ETV89450.1| hypothetical protein H257_00724 [Aphanomyces astaci])

HSP 1 Score: 348.977 bits (894), Expect = 1.041e-116
Identity = 175/333 (52.55%), Postives = 216/333 (64.86%), Query Frame = 0
Query:    3 SAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDA 335
            S VVLATAGYDH IRFWEA +G C R+++YPDSQVNCLQITPDK+++ A GNPH+RLFE+  N NPNPV SY+GH GNV ++GFQ+ GKW+++ SEDG++K+WD RA GCQR  E S                             VNSV LHPNQAELV+ DQ G +RVWDL SN C  +  P+G   VR+V VA DAS + A NN    +   Y   S D Y  R +     + H  ++LK   SP++Q L T S+DKT K+WN+    + HTL+ HQRWVWD AFSA SSYLVTA SD   RLWDL TGD +R Y G + A  CVAL+D+
Sbjct:    2 SGVVLATAGYDHTIRFWEAASGTCTRTVKYPDSQVNCLQITPDKKYIVAAGNPHIRLFEINTN-NPNPVRSYDGHSGNVTSIGFQKHGKWMFSGSEDGSIKIWDLRAQGCQRNYECS---------------------------APVNSVTLHPNQAELVSADQNGCIRVWDLTSNTCSTKFSPDGENAVRTVDVAKDASTLIAANNHGTCFA--YTPKSSDNYELRTSW----QAHNEYVLKARVSPNAQYLATCSSDKTVKVWNMADMSLLHTLQGHQRWVWDCAFSAVSSYLVTASSDQTARLWDLSTGDTIRQYNGHHKAAICVALDDS 300          
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|1183352695|gb|ORX80649.1| (WD40 repeat-like protein [Anaeromyces robustus])

HSP 1 Score: 347.051 bits (889), Expect = 5.940e-116
Identity = 169/340 (49.71%), Postives = 216/340 (63.53%), Query Frame = 0
Query:    2 SSAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLW----NVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI 337
            S+ VVLATAGYDH IRFWEA +G+C R++++PDSQVN L I+PDK++LAA GNPHVRL+EV  N NPNPV S++GH GNV A+ +Q  G+W+ T SEDGT+K+WD RA G QR  E                             V VN V++HPNQ ELV+ DQ G ++VWDL  N C HE LPE  VP RSVS+A D S++   NN+ N YVW  +E       +    VQ V  H++++ KC  SPD++ L T SAD T K+W    N  ++ +   L  HQRWVWD +FSADS+YL+T  SDH  RLWDL T + +RTY G   AV CVAL+D  +
Sbjct:    7 STEVVLATAGYDHTIRFWEALSGICLRTVQHPDSQVNRLAISPDKRYLAAAGNPHVRLYEVQTN-NPNPVASFDGHTGNVTAIAYQSAGRWIVTGSEDGTIKIWDVRAPGVQRDYE---------------------------LKVPVNDVIIHPNQGELVSCDQSGSIKVWDLSENLCTHELLPEEDVPARSVSMAADGSMLICSNNKGNFYVWKMKEKGD---LTELEAVQKVNAHSKYITKCVLSPDTKSLATCSADNTVKIWENLNNDGQFSLTKKLIGHQRWVWDCSFSADSAYLITGSSDHTARLWDLNTSETIRTYNGHQKAVVCVALHDVSL 315          
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|1183326928|gb|ORX56688.1| (WD40 repeat-like protein [Piromyces finnis])

HSP 1 Score: 347.051 bits (889), Expect = 6.625e-116
Identity = 169/340 (49.71%), Postives = 217/340 (63.82%), Query Frame = 0
Query:    2 SSAVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETLPEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGSPDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLW----NVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQI 337
            S+ VVLATAGYDH IRFWEA +G+C R++++PDSQVN L I+PDK++LAA GNPHVRL+EV  N NPNPVV+++GH GNV A+ +Q  G+W+ T SEDGT+K+WD RA G QR  E                             V VN V++HPNQ ELV+ DQ G ++VWDL  N C HE LPE  VP RSVS+A D S++   NN+ N YVW  +E       +    VQ V  H++++ KC  SPD++ L T SAD T K+W    N  ++ +   L  HQRWVWD +FSADS+YL+T  SDH  RLWDL T + +RTY G   AV CVAL+D  +
Sbjct:    7 STEVVLATAGYDHTIRFWEALSGICLRTVQHPDSQVNRLAISPDKRYLAAAGNPHVRLYEVQTN-NPNPVVNFDGHTGNVTAIAYQSAGRWIVTGSEDGTIKIWDVRAPGVQRDYE---------------------------LKVPVNDVIIHPNQGELVSCDQSGSIKVWDLSENLCTHELLPEEDVPARSVSMAADGSMLICSNNKGNFYVWKMKEKGD---LTELEAVQKVNAHSKYITKCVLSPDTRSLATCSADNTVKIWENVNNDGQFSLTKKLVGHQRWVWDCSFSADSAYLITGSSDHTARLWDLNTSETIRTYNGHQKAVVCVALHDVSL 315          
BLAST of EWM28213.1 vs. NCBI_GenBank
Match: gi|223999095|ref|XP_002289220.1| (WD40-repeat protein [Thalassiosira pseudonana CCMP1335] >gi|220974428|gb|EED92757.1| WD40-repeat protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 346.28 bits (887), Expect = 1.662e-115
Identity = 169/344 (49.13%), Postives = 227/344 (65.99%), Query Frame = 0
Query:    4 AVVLATAGYDHKIRFWEAPTGVCARSIRYPDSQVNCLQITPDKQFLAAGGNPHVRLFEVGGNANPNPVVSYEGHVGNVMAVGFQQDGKWLYTASEDGTVKLWDTRASGCQRTLENSTATSSSSSGGGGGAGGASGSGHHHTSMVAVNSVVLHPNQAELVTGDQEGRVRVWDLGSNRCVHETL---------PEGSVPVRSVSVANDASLIAAGNNQANLYVWHYQEGS---PDAYFSRPAHVQPVKTHARFLLKCAFSPDSQRLVTTSADKTAKLWNVRKWEVEHTLKDHQRWVWDAAFSADSSYLVTACSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDA 335
            +V+LATAG+D KIRFWEAP+GVC+R +RY DSQVNCL+ITPDKQ+LAAGGNPH+RLFE+  ++N NP+++ EGH GNV ++GFQ++G++LY+ SEDG+VKLWD R+    R+ +                           S   VNSV LHPNQAE+++GDQ G +++WDLGS++C+++ +         P+G V ++SV V+ DA  + A NN A ++ W+  + +    D  F RP           +LL    SPDS  LVTTS+DKT +LW+ R W++  TL  H +WVWDA FSADSSYLVTA SD   RLW+LRTG  VR Y   + AVTCVALND+
Sbjct:   10 SVILATAGHDDKIRFWEAPSGVCSRILRYADSQVNCLEITPDKQYLAAGGNPHIRLFEINNSSNQNPILTLEGHTGNVTSLGFQRNGRYLYSGSEDGSVKLWDLRSPTYSRSFD---------------------------SKGPVNSVALHPNQAEIISGDQNGSIKIWDLGSSKCINDIIPDAQSSSTSPQGRVAIQSVDVSGDARTLVAANNHAEVFAWNPSDTTNMQNDEPF-RPVAKFRAHPLGAYLLHARISPDSLSLVTTSSDKTVRLWDTRTWQLTQTLSQHNKWVWDAVFSADSSYLVTASSDRTARLWNLRTGTPVRQYTDHDYAVTCVALNDS 325          
The following BLAST results are available for this feature:
BLAST of EWM28213.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110558|gb|EWM28213.1|0.000e+0100.00WD40 repeat containing protein [Nannochloropsis ga... [more]
gi|552820858|ref|XP_005845694.1|1.226e-12152.82hypothetical protein CHLNCDRAFT_36454 [Chlorella v... [more]
gi|926791647|ref|XP_013904297.1|2.241e-11851.94G protein beta subunit-like protein [Monoraphidium... [more]
gi|673016760|ref|XP_008862341.1|1.040e-11752.25hypothetical protein H310_01098 [Aphanomyces invad... [more]
gi|760445781|ref|XP_011399959.1|2.855e-11751.04LST8-like protein [Auxenochlorella protothecoides]... [more]
gi|302842255|ref|XP_002952671.1|3.322e-11751.04hypothetical protein VOLCADRAFT_81959 [Volvox cart... [more]
gi|698777612|ref|XP_009821850.1|1.041e-11652.55hypothetical protein H257_00724 [Aphanomyces astac... [more]
gi|1183352695|gb|ORX80649.1|5.940e-11649.71WD40 repeat-like protein [Anaeromyces robustus][more]
gi|1183326928|gb|ORX56688.1|6.625e-11649.71WD40 repeat-like protein [Piromyces finnis][more]
gi|223999095|ref|XP_002289220.1|1.662e-11549.13WD40-repeat protein [Thalassiosira pseudonana CCMP... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2402rna2402Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications