rna2401, rna2401 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2401
Unique Name	rna2401
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2229
Alignment location	CM002459.1:297784..299603 -

Link to JBrowse

Properties


Property Name	Value
Product	endoplasmic reticulum-golgi intermediate compartment protein 3
Orig transcript id	gnl\|cribi\|Naga_100004g34.9181.mrna
Orig protein id	gnl\|cribi\|Naga_100004g34.9181
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:297784..299603 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g34	gene2295	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28250.1	cds2393	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2401	rna2401-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:297784..299603-
coding sequence from alignment at CM002459.1:297784..299603-

mRNA sequence

>rna2401 ID=rna2401|Name=rna2401|organism=Nannochloropsis gaditana|type=mRNA|length=2229bp
ATGCGCGGATTTCTCTTCGTGTGTCCTTTGTGGACAACCTGCCTGCTGTA
TGTTTCGTGCCTCATCCATGTCAATGTTGAAGGTTTTAAACTCTTCCCAA
CTGCAGTATCGATATCTTTCAAGGCTGCCCCAAAACATAGAAGTGTCGGC
ATCATCGCGAGCAGCAGCCCCAATATTGAAACTACCACCAACCATACCGC
CAGGAAAGTCCTTGTCATTGGTAGTGGCGGTCGTGAGTTTGCATTGACAC
AAGCTTTGCTACGTCTTTCTTCTCCTGAAGCAATCTATGTGGCTCCCGGG
AATGCCGGCACGCAGCAGCTTTCTCCGCCAGTGGTCGTCAATGTCCCCGA
ACTCAAACCTAACGATTTCAAAGGGATCACGGATTTTGCTCAAAAGCATG
GGATTGAGATAGTAGTGGTAGGCCCTGAAGACCCCTTAACGAATGGCTTG
CAGGATTTTTTGCGGGAGTCAAACATTCCTTGCTTCGGACCCAGTGCTGC
GGCGGCTCGATTGGAAGGAAGCAAGGCTTGGGCTAAAGCCTTCATGAACC
GCCACCAGATTCCCACGGCGAGACACGCGACTTTCTCCGACCTTACCGCT
GCCCTAGAGTACGTAGAGCATCAAACATTGCCGATGGTGGTAAAGGCATC
GGGACTGGCTGGAGGAAAAGGTGTGACGATAGCCCACTCCCGGGAGGACG
CCAGGAAGGCCTTGGAGGCGATCATGGGGACGACCCCTGTCTTTGGCCCG
GCCGCCGGGGCGGAGGTAGTGATCGAGGAGTATTTGGTAGGCGATGAGGT
GTCGGCCATCGCGTTTTGTGACGGGGACAGCGTGGCGGCCTGTCTTCCCT
TCGCGCGTGACTACAAGCGGCTGGAGGAGCACGACTCGGGCCCAAACACG
GGAGGAATGGGCTCCTTTGCGCCCGTGACTGACTTGACTACAGACATCGC
TGCTAGCATACAGAACATTTTAGTCACAACCGTGAAGGGAATGAGGGAGG
AGGGACACCCTTATCATGGCGTTCTGTACGGCGGTCTCATCATCACGAAG
GGAGGCGCAGCGGAAGACGGGAGGGAAGAGGTGAAGGTGCTGGAGTTCAA
CTGTCGCTTTGGGGATCCAGAGGCGCAGTCAATTCTACCATTATTGTCGG
ATAAAGTTGATTTGGCCAAGCTCATGCTGCAATGTGCGCAAGGAGGCCGA
TTCGGCGACACAACTGGCAGGCTCGCCGCGAGCACCCCTAGGGACTTGAC
GACGAAGAATAATACTTTTGCTGCCACAGTCATAGCCGCCTCCGAGGGCT
ATCCCACAGCCACGGGATCCATAAAACCTCACATTATCCACGGGCTGCCG
CTGGCTTGTCGCGTCCCCGGGGTTTGTAGCGTGGCGCAAGCAGGAACCGC
CCGCCTGGTCTTGGCCAATGGAGCACGGGTCGTTACCGTGTCAGGCGGGC
GCGTACTGGGAGTGACAGGGGAAGCAACAACGCTGCGCCTAGCGCTCCTG
CATGCATATCATGGCTTGAGTGAGATCCGCTTTCAAGGAATGCGGTGCAG
GACGGATATTGGCGCCCAAGCCGTGAGGTCTCAGCCTGTGCGCGTCGCGA
TATTAGGTTCTTCGAGAGGTACGAGTGTCTCCAAGATACTAACGGGCAAG
CGAGGGGTGTTCGAAGTGGTATTGGTCATGTCGGATACACAAGACGCAAA
TGGGATACTGTCAAAAGCTCAAGCGGCCCATGTACCCGATTGCCGTTTTC
TTGGCGCGGACAGTGGGGGGAATGGAGACTCGGAGATGGCACGGGATACT
CTGGAGGAAAAAATTGAGGTTGCCATGGAGGAGTCTAAGGCAGAAATCCT
CCTCTTAAATGGATACAGGCGTATATTATCCCCGCGCTTGTGTCGCGTAC
TGAGAGGCCGTTGCTTAAACATCCATCCTTCCCTGCTGCCAGACTTTGGT
GGACATTTCGATTTAGCGGTACATCAAGCTGTTTTGGACGCAGGACGAAC
AAGCAGTGGGTGCTCTGTCCATTTTGTGACTGAAAATGTCGACCAAGGAC
CTGTCTTGATACAAAAAACGTGCTCGGTAGAACCTGGCTTCGATACTGCA
GCCACACTCAAGGCGAAGGTCCAGGAGTTGGAGGAGAGAGCCTGGGAGGA
AGCTGTAAGAGTTTACCAAGAGGATCTGCCCAGTATTGCGCGCGCCATTC
TATCCATGAGTGATCCAAAGACGTTTTGA

protein sequence of rna2401

>rna2401-protein ID=rna2401-protein|Name=rna2401|organism=Nannochloropsis gaditana|type=polypeptide|length=430bp
MISPNISPKDLTLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIF
LFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALD
PLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDS
RAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQ
CCNTCAEVKQAYDSKGWAFIGLNVEQCKQENLQVSFGDGAEEGCNIHGSL
LLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEE
FPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSE
HIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGV
FSVFGVVDGVVHNLMKNGLPTGKMGGAPGS

mRNA from alignment at CM002459.1:297784..299603-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2401 ID=rna2401|Name=rna2401|organism=Nannochloropsis gaditana|type=mRNA|length=1820bp|location=Sequence derived from alignment at CM002459.1:297784..299603- (Nannochloropsis gaditana)
GGGAACACGAGGTATTTCAAATCGCCGGCATCGCCCATGCACCGTTGCCG
CTACCTAGAAGGGCTTATGGGCGAGTCGACAATATTACCTTCCTCAAGGC
ATGCAACTGACTACAATCGTGTAATTGATATCCAGATAGTACACTCAGGT
GCTAGGAATCTTTCCAACAGGAGGCGAGGCTCTGACGCTCTCGTACCAGC
GTCTTGGAGCATTCCCTAGGCAACCTTGATAGCAGTACGATTCTTCAGGA
AATAAGAGCAAAGACGTAACCAGACCAATTACTTTATCCACACTTTCTGC
GGAGCACACCATGATATCGCCTAACATATCTCCAAAAGATTTGACGCTTT
ATGAGAGATTGCGGCGACTTGATTATCATCCCAAGACAAAAGATGATTTC
AAAGTCCGGACGGCTTACGGCGGGGCCACGTCGGTCGTAGCGTTAGCCTG
TATGATATTTCTTTTCTTCACGGAGCTCAAGTATTCCATGGAGAAGGAGA
TTGTGGACCATATGTACGTCAATTCCTCCCGGGATACCCGCCTTTTGTTC
AATTTTAATCTGACCTTTCCGTCCGTGTCGTGCTCACTTTTGAGTGCCGA
CGCCTTGGACCCGTTGGGTAACAAGCAAGAGGGAGTGGAAAGCCACGTAT
TCAAGACTCGTCTCGACTCGATGGGGAATCCGATCGCTGCCAAGACATGG
CATAAGCTTGGGGACACTTTCACGGAGGAAGACTTATTGCTGAAACATGA
GGAAGATAGCAGAGCTCAACTCGAGGAGGAAGAGGAGCAGGAGGAGAAGT
TGGGGGAAGAAGGAGATGGACAACAAGTTGGAGAGGATGGAAAGCCGAGA
GGACGAAACTTGAAACGGCGAAAGTGCGGGGACTGCTACGGCGCCGGGGA
GCCCGGACAATGCTGCAACACATGTGCCGAAGTCAAGCAGGCCTATGACT
CCAAGGGGTGGGCGTTCATAGGCTTAAATGTAGAGCAATGCAAGCAAGAG
AATCTGCAAGTTTCATTTGGAGACGGGGCGGAGGAGGGCTGCAATATTCA
CGGATCTTTGCTGCTAACGCACGACAGTGGCAACGTGCATTTCGCCCCGG
GCGAGCAACTGCGGCAGTCGGGGGCATTGAATGTCGCCGATTTAGTGACG
TTTACATTCTTACAATTCAATGTCTCCCATGAAATTCACCATCTTTCCCT
TGGCGAAGAGTTCCCAGGATTCCGCTCACCGCTTAGTAACCAAAAACGGA
GCGTCGCGGACGGCTACGGGATGTACCAATATTACTTGAAGGTGGTGCCC
ACTATTTACAAGCATTTGAGTCAACCTCCTACAGTTTCCAATCAATACGC
AGTCTCGGAGCACATTCGGCATATAAATCCGGGAAGCAATCGAGGGCTAC
CTGGGGTGTGGTTTTTCTACGACACCTCACCCGTGCATGTGGAATTCCAA
GAGCGGCGGAAAGGGCTTTTACCATTTTTAACCAGCGTCTGTGCCATTGT
TGGCGGCGTGTTTTCCGTTTTTGGGGTCGTCGATGGAGTGGTTCATAACT
TGATGAAAAACGGGTTGCCTACTGGGAAGATGGGAGGGGCTCCGGGAAGT
TAAAGACTCTTGACACAACAAGAAAGAAAATGGAAGGTAGCATTTAGAGT
TGTGTATGAAAGATATAAAGAGAGTACACGGACCTGATAAGTGTATCGTT
GCGTCATGCAAAGCGAAGGGGGCGGTAGCAAAGCGCAAGGCAAGGCAAGC
GGGTCTTACCAGTCCGTGGGTCATGCGTTCTTGGGAAAGAAAAATACATG
CAGTGAAACCATAAAATGGA

Coding sequence (CDS) from alignment at CM002459.1:297784..299603-

>rna2401 ID=rna2401|Name=rna2401|organism=Nannochloropsis gaditana|type=CDS|length=1293bp|location=Sequence derived from alignment at CM002459.1:297784..299603- (Nannochloropsis gaditana)
ATGATATCGCCTAACATATCTCCAAAAGATTTGACGCTTTATGAGAGATT
GCGGCGACTTGATTATCATCCCAAGACAAAAGATGATTTCAAAGTCCGGA
CGGCTTACGGCGGGGCCACGTCGGTCGTAGCGTTAGCCTGTATGATATTT
CTTTTCTTCACGGAGCTCAAGTATTCCATGGAGAAGGAGATTGTGGACCA
TATGTACGTCAATTCCTCCCGGGATACCCGCCTTTTGTTCAATTTTAATC
TGACCTTTCCGTCCGTGTCGTGCTCACTTTTGAGTGCCGACGCCTTGGAC
CCGTTGGGTAACAAGCAAGAGGGAGTGGAAAGCCACGTATTCAAGACTCG
TCTCGACTCGATGGGGAATCCGATCGCTGCCAAGACATGGCATAAGCTTG
GGGACACTTTCACGGAGGAAGACTTATTGCTGAAACATGAGGAAGATAGC
AGAGCTCAACTCGAGGAGGAAGAGGAGCAGGAGGAGAAGTTGGGGGAAGA
AGGAGATGGACAACAAGTTGGAGAGGATGGAAAGCCGAGAGGACGAAACT
TGAAACGGCGAAAGTGCGGGGACTGCTACGGCGCCGGGGAGCCCGGACAA
TGCTGCAACACATGTGCCGAAGTCAAGCAGGCCTATGACTCCAAGGGGTG
GGCGTTCATAGGCTTAAATGTAGAGCAATGCAAGCAAGAGAATCTGCAAG
TTTCATTTGGAGACGGGGCGGAGGAGGGCTGCAATATTCACGGATCTTTG
CTGCTAACGCACGACAGTGGCAACGTGCATTTCGCCCCGGGCGAGCAACT
GCGGCAGTCGGGGGCATTGAATGTCGCCGATTTAGTGACGTTTACATTCT
TACAATTCAATGTCTCCCATGAAATTCACCATCTTTCCCTTGGCGAAGAG
TTCCCAGGATTCCGCTCACCGCTTAGTAACCAAAAACGGAGCGTCGCGGA
CGGCTACGGGATGTACCAATATTACTTGAAGGTGGTGCCCACTATTTACA
AGCATTTGAGTCAACCTCCTACAGTTTCCAATCAATACGCAGTCTCGGAG
CACATTCGGCATATAAATCCGGGAAGCAATCGAGGGCTACCTGGGGTGTG
GTTTTTCTACGACACCTCACCCGTGCATGTGGAATTCCAAGAGCGGCGGA
AAGGGCTTTTACCATTTTTAACCAGCGTCTGTGCCATTGTTGGCGGCGTG
TTTTCCGTTTTTGGGGTCGTCGATGGAGTGGTTCATAACTTGATGAAAAA
CGGGTTGCCTACTGGGAAGATGGGAGGGGCTCCGGGAAGTTAA

Synonyms

Publications