EWM28250.1, cds2393 (CDS) Nannochloropsis gaditana

Overview
NameEWM28250.1
Unique Namecds2393
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:298001..299293 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28250.1
Productendoplasmic reticulum-golgi intermediate compartment protein 3
Orig transcript idgnl|cribi|Naga_100004g34.9181.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:298001..299293 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR012936Erv_C
Homology
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|585110595|gb|EWM28250.1| (endoplasmic reticulum-golgi intermediate compartment protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 896.73 bits (2316), Expect = 0.000e+0
Identity = 430/430 (100.00%), Postives = 430/430 (100.00%), Query Frame = 0
Query:    1 MISPNISPKDLTLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLNVEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLMKNGLPTGKMGGAPGS 430
            MISPNISPKDLTLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLNVEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLMKNGLPTGKMGGAPGS
Sbjct:    1 MISPNISPKDLTLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLNVEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLMKNGLPTGKMGGAPGS 430          
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|676381695|ref|XP_009034126.1| (hypothetical protein AURANDRAFT_2571, partial [Aureococcus anophagefferens] >gi|323454843|gb|EGB10712.1| hypothetical protein AURANDRAFT_2571, partial [Aureococcus anophagefferens])

HSP 1 Score: 297.36 bits (760), Expect = 4.685e-94
Identity = 169/410 (41.22%), Postives = 221/410 (53.90%), Query Frame = 0
Query:   13 LYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMG-----NPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQ-CCNTCAEVKQAYDSKGWAFIGLNVEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFR----------------SPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGV 400
            +  +LR +D +PKTKD+F+VRT  GG +S+ A+   I L  +ELK+S+     D ++VNSS    L   F L FP  +C LL+ DA D  G   EGV+ HV KTRLD+ G     N  AA + HK+GDT T E+ L   +E                             KP         CGDCYGA +  + CC TC +V+ AY  +GW F    V QC  E  + +    ++EGC+I G+L L   SGN H APG  L+ SG     DLV  TF +FNVSH +  L  G +                     S L  + R++ DGYGM+QYYLKVVPT+YK+L        QY+V+EH+RH+ PGS +GLPGV+FFY+ SP+  EF ERR G L  LT + AIVGGV
Sbjct:    4 VMAKLRNMDMYPKTKDEFRVRTMQGGVSSLFAVVVAIILVRSELKHSLAVSTHDRLFVNSSHGDGLSVRFELEFPRANCELLAIDANDESGQPLEGVQQHVIKTRLDTNGRRVLVNRKAANSVHKVGDTATSEEHLAAPDE----------------------------AKPE------VACGDCYGAQDDERPCCATCDDVRSAYRKRGWTFHEHTVAQCAGELAEAALDLDSDEGCSIKGTLELPAVSGNFHVAPGRHLQTSGLFKGMDLVQLTFDKFNVSHTVKQLRFGPDERSLEPARASRKVVGPDVDLSSQLDGESRTLGDGYGMHQYYLKVVPTVYKNLGGKTRELWQYSVTEHVRHVAPGSGKGLPGVFFFYEVSPLCAEFVERRNGWLALLTGLAAIVGGV 379          
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|1173953369|gb|OQS00917.1| (golgi family protein [Achlya hypogyna])

HSP 1 Score: 297.36 bits (760), Expect = 6.902e-94
Identity = 156/408 (38.24%), Postives = 228/408 (55.88%), Query Frame = 0
Query:   12 TLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGL-NVEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADG-YGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLMKN 417
            TL+ +L+  D +PKT ++FKVRT  GG  SV A   + +LF +EL Y ++ + VD MYV+  R+  L  NF++ FP + C ++S +  D  G  Q  V  ++ K RLD+ G  + +  W  +  T T   +  K +E     L    +   +   E                     CG+CYGAGEPG+CCNTC +VK AY  + WA   L NV QC  ++L+        EGC I G L +   +G  +FAP  ++ QSG L   D++  TF  F+ SH IH L+ G+E+P  ++PL+ + + +  G  G YQY+LKVV T Y  L+    VSNQY+ +EH   + P   +GLPG+ F Y+ SP+    ++ +KG L FLTSVCAIVGGVF+V G+VD  ++NL+ +
Sbjct:    3 TLWTKLKGFDANPKTLEEFKVRTTQGGFFSVCAFVLIFYLFVSELNYHLDIDTVDKMYVDGQRNVNLSINFDIEFPRMPCQIVSIEHADLAGRVQLDVIDNIHKVRLDAQGTSLCSDCWALIASTLTGNSIGEKIKESIGGALTNASQLAVQTEAE--------------------SCGNCYGAGEPGECCNTCQDVKNAYIRRNWALPSLHNVVQCMNDDLEAILKGEINEGCRISGHLDVAKVAGKFYFAP-SKIFQSGYLIADDVLDSTFKVFDNSHTIHMLTFGQEYPNMKNPLNKRVKHLGAGKRGAYQYFLKVVSTDYSFLNGAEIVSNQYSATEHFLQMTPTGQKGLPGITFAYEFSPIKFRIEQTQKGWLQFLTSVCAIVGGVFTVMGLVDAAMYNLVSS 389          
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|669155406|ref|XP_008613265.1| (hypothetical protein SDRG_09129 [Saprolegnia diclina VS20] >gi|530734900|gb|EQC33142.1| hypothetical protein SDRG_09129 [Saprolegnia diclina VS20])

HSP 1 Score: 295.049 bits (754), Expect = 2.731e-93
Identity = 155/408 (37.99%), Postives = 230/408 (56.37%), Query Frame = 0
Query:   12 TLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGL-NVEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGY-GMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHNLMKN 417
            +++++++  D +PKT ++FKVRT  GG  S+ A   M +LFF+EL Y +  + VD MYV+ +R+  L  NF++ FP + C ++S +  D  G  Q  V  ++ KTRLD  GN I  K    +G                          E +L  + DG                 KCG+CYGAG+PG+CCNTC +VK AY  + WA   L NV QC   +L+       +EGC I G L +   +G  +FAP  ++ QSG L   D++  TF  F+ SH IH L+ G+E+P  ++PL+ + + +A+G  G YQY+LKVV T Y  L+     SNQY+ +EH   + P   +GLP + F Y+ SP+    ++ +KGL+PFLTSVCAIVGGVF+V G+VD  ++N++ +
Sbjct:    3 SMWQKIKGFDANPKTLEEFKVRTTQGGLFSLCAFILMAYLFFSELAYHLAVDTVDKMYVDGTRNVNLSINFDIAFPRMPCQIVSIEHADLAGRVQLDVIDNIHKTRLDLQGNAIGEKIKETIGGALV---------------------NESQLAVQSDGS----------------KCGNCYGAGDPGECCNTCEDVKSAYVRRNWALPSLHNVVQCMNADLESILKGDIKEGCRITGHLDVAKVAGKFYFAP-SKIFQSGYLVADDVLDSTFKVFDNSHTIHALTFGQEYPNMKNPLNARVKHLAEGTRGAYQYFLKVVSTDYSFLNGDEIKSNQYSATEHFLEMTPTGQKGLPRITFAYEFSPIKFRIEQTQKGLVPFLTSVCAIVGGVFTVMGLVDAAMYNVISS 372          
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|219111025|ref|XP_002177264.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411799|gb|EEC51727.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 286.96 bits (733), Expect = 1.029e-89
Identity = 156/419 (37.23%), Postives = 239/419 (57.04%), Query Frame = 0
Query:   11 LTLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQE---GVESHVFKTRLDSMGNP----IAAKTWHKLGDTF-TEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLN-VEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQS--GALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRG------LPGVWFFYDTSPVHVEFQE-RRKGLLPFLTSVCAIVGGVFSVFGVVDGVV 411
            + L +RL+R D H     +F+V T  G   S+V L  + +L   +  ++ +  + + ++VN+S  + +   F+++ P V CS LS DA DP G KQ      + HV+K R+  + N     +  ++  +LG T  TE+DL +K EE   A+   E   E                           CGDCYGAGE G+CC +C +VK+AY  +GW+    + V QC++E+      +   EGCN+HG + L+   GN+H APG     +  G +N+ D +  +F Q+NVSH+IH L  G+++P     L  + R++ DGYGMYQYY +VVPT Y  L+     ++QY+V+EH+RH++PGSNRG      +PG++FFY+ SP+HV+  E  +KG + FLTSVCAIVGGV ++ G++D V+
Sbjct:    1 MDLKDRLKRFDTHSPVSKEFRVYTVQGAVLSIVTLVFVGYLVTADFFFNFQVTLQEKVHVNASSPSGIELEFDVSLPDVPCSKLSIDANDPNGQKQSLHLDTDHHVWKHRITLLPNGHRQLLGERSKLELGSTLLTEKDLEVKAEELQNAKDNSESRTEMT------------------------PCGDCYGAGEEGECCKSCEDVKRAYKRRGWSLRDTSGVSQCRRES---GIAEAEGEGCNVHGVVALSSGGGNLHIAPGRDTEANFPGGMNIFDALLQSFHQWNVSHQIHKLRFGKDYPAGVYQLDGETRTITDGYGMYQYYFQVVPTRYTFLNGTTIQTHQYSVTEHLRHVSPGSNRGYSLNSRMPGIFFFYEVSPLHVDIMEVYQKGWIAFLTSVCAIVGGVVTIAGLIDHVI 392          
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|1210519469|dbj|GAX21593.1| (hypothetical protein FisN_29Hh026 [Fistulifera solaris])

HSP 1 Score: 285.419 bits (729), Expect = 3.989e-89
Identity = 158/411 (38.44%), Postives = 230/411 (55.96%), Query Frame = 0
Query:   12 TLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQE---GVESHVFKTRLD-----SMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLN-VEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQ----LRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQE-RRKGLLPFLTSVCAIVGGVFSVFGVVD 408
            TL ERL+++D H    ++F+V T  G   SV  +  +++L +TE+ ++ +  +   ++VN++    L   F++T  SV CS LS DA DP G         E HV+K R++     +  N I ++   +LG T                 L + E  E K+ E  +  Q   D            C  CYGAG+  +CCNTC +V++AY  KGWA   L+ + QC+Q        +G  EGCN+HG + L    GN+H APGE     L +  ++++ DL+   F ++NV+H IH L  G E P     L  QKR V D +GMYQYYL+++PT YK  +     +NQY+V+EH+RH+ PGSNRGLPGV+FFY+ SP+HVE  E  RKG + F+TSVCA+VGGV +  G++D
Sbjct:    4 TLKERLKKIDTHSSVSNEFRVYTVSGAVLSVTTVCFILYLVWTEITFNFQTTVQQRVHVNATSPRGLEMEFDITLHSVKCSQLSIDAQDPSGQSMSLHLDKEHHVWKHRVEIADDGAKFNVIGSRNKIELGST-----------------LLDMETVEYKIAENSELMQDENDND----------CLSCYGAGDEDECCNTCEDVQRAYKRKGWALPDLSTIAQCRQSP---QTDEGEHEGCNVHGKVALDSGGGNLHLAPGEDMANGLTRPASVSLFDLLLLKFHEWNVTHTIHKLRFGPEHPDAIYQLEGQKRVVKDSHGMYQYYLQIIPTQYKFQNGTTIQTNQYSVTEHLRHVPPGSNRGLPGVFFFYEVSPLHVEITEGYRKGWIAFVTSVCAVVGGVVTTMGLLD 384          
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|1072231880|gb|OEU16612.1| (DUF1692-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 285.034 bits (728), Expect = 5.014e-89
Identity = 157/414 (37.92%), Postives = 233/414 (56.28%), Query Frame = 0
Query:   15 ERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQE---GVESHVFKTRL--DSMGNP--IAAKTWHKLGDTFTEEDL--LLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLN-VEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQ----SGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEF-QERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHN 413
            E LR+ D H     +F+V T +G   SVV +  + +L FTE+ Y+ +  + + ++VN++  T L   F+++ P V CS+L  DA DP G  Q        HV+K R+  D  G    +  K   + G T  EE L  L       +   ++EEE                         K   CG C+GAGE G+CC+TC +VK+AY  KGW     + ++QC++E   V   +G  EGCN+HG + L    G+ H APG ++      S   ++ +++  TF QFN++H +H +  G+ FPG ++ L    R +ADGYGMYQYY K+VPT+ K  +     +NQY+V+EH+RH+NPG  RGLPGV+FFY+ SP+HVE  ++ RKG L F TSVCAIVGGV +  G++D ++++
Sbjct:    5 ENLRKFDNHSSVSKEFRVYTFHGAVLSVVTVIAITYLVFTEMGYNFKLIMTERVHVNATSPTGLDVEFDISLPLVPCSVLKIDANDPSGQTQSLHLDQRHHVWKHRIKVDDEGEIEFLGDKRKLEQGSTLKEEHLEELFDTMNKEKGVTDDEEE-------------------------KTVDCGSCFGAGEEGECCDTCDDVKRAYTRKGWHIQNPDEIDQCRKEKKNVKEDEG--EGCNVHGLVALDSGGGSFHLAPGREMDHAMDPSDIGSIFEMLLSTFEQFNMTHTVHKIRFGDAFPGNKNQLDGVNRVIADGYGMYQYYFKIVPTLVKFKNGTSIQTNQYSVTEHLRHVNPGGGRGLPGVFFFYEISPLHVEIVEDYRKGYLGFFTSVCAIVGGVVTTMGLLDQILYS 391          
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|1210526334|dbj|GAX14822.1| (hypothetical protein FisN_29Lh026 [Fistulifera solaris])

HSP 1 Score: 282.722 bits (722), Expect = 3.802e-88
Identity = 157/411 (38.20%), Postives = 230/411 (55.96%), Query Frame = 0
Query:   12 TLYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQE---GVESHVFKTRLD-----SMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPGQCCNTCAEVKQAYDSKGWAFIGLNV-EQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQ----LRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPGSNRGLPGVWFFYDTSPVHVEFQE-RRKGLLPFLTSVCAIVGGVFSVFGVVD 408
            TL ERL+++D H    ++F+V T  G   SV  +  +++L +TE+ ++ +  I   ++VN++    L   F++T  SV CS LS DA DP G         E HV+K R++     +  N I ++   +LG T                 L + E  E K+ E  +  +   DG           C  CYGAG+  +CCNTC ++++AY  KGWA   L+   QC+Q        +G  EGCN+HG + L    GN+H APGE     L +  ++++ DL+   F ++NV+H IH L  G E P     L  Q+R V D +GMYQYYL+++PT YK  +     +NQY+V+EH+RH+ PGSNRGLPGV+FFY+ SP+HVE  E  RKG + F+TSVCA+VGGV +  G++D
Sbjct:    4 TLKERLKKIDTHSSVSNEFRVYTVSGAVLSVTTVCFILYLVWTEITFNFQTTIQQRVHVNATSPRGLEMEFDITLHSVKCSQLSIDAQDPSGQSMSLHLDKEHHVWKHRVELADNGAKFNVIGSRNKIELGST-----------------LLDMETIEYKIAENTELIRDDNDGD----------CLSCYGAGDEDECCNTCEDIQRAYKRKGWALPDLSTFAQCRQSP---QADEGEHEGCNVHGKVALDSGGGNLHLAPGEDMTNGLTRPASVSLFDLLLLKFHEWNVTHTIHKLRFGPEHPDAIYQLEGQRRVVKDSHGMYQYYLQIIPTQYKFQNGTTIQTNQYSVTEHLRHVPPGSNRGLPGVFFFYEVSPLHVEITEGYRKGWIAFVTSVCAVVGGVVTTMGLLD 384          
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|405966014|gb|EKC31342.1| (Endoplasmic reticulum-Golgi intermediate compartment protein 3 [Crassostrea gigas])

HSP 1 Score: 279.256 bits (713), Expect = 9.138e-87
Identity = 149/405 (36.79%), Postives = 234/405 (57.78%), Query Frame = 0
Query:   13 LYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPG--QCCNTCAEVKQAYDSKGWAFIGLN-VEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPG-SNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHN 413
             YERLR+ D +PKT +DF+V+T  G   +V++   M+ LF +EL Y + K++   ++V+++R  +L  N ++ FP V C+ LS DA+D  G +Q  V+ H+FK RL++ G         K+ DT                + E+E    E + E GD  +   +     + L   +C  CYGA E G  +CCNTC +V++AY  KGWAF     +EQC +E          +EGC ++G L +    GN HFAPG+  +Q   ++V DL  F   +FN+SH I HLS G+++PG  +PL    +   D   M+QYY+KVVPT Y  +      +NQY+V++H + +  G  + GLPGV+F Y+ SP+ V++ E+++  + FLT VCAI+GG+F+V G++D ++++
Sbjct:    6 FYERLRQFDAYPKTLEDFRVKTFGGALVTVISSLLMVILFISELNYYLTKDVQPELFVDTTRGQKLRINIDIDFPKVPCAYLSIDAMDVSGEQQLDVDHHLFKQRLNADGE--------KIKDT----------------EPEKEGTMYEPIFELGDKSKDAVEAVT--KKLDPDRCESCYGA-ETGDLKCCNTCEDVREAYRKKGWAFNSPEGIEQCNREGWTAKMKAQQKEGCQVYGYLEVNKVQGNFHFAPGKSFQQH-HVHVHDLQAFGGQKFNLSHAIRHLSFGQDYPGIINPLDQTSQISEDEQTMFQYYVKVVPTTYVDVKGKTLYTNQYSVNKHSKTVGNGMGDSGLPGVFFIYELSPMMVKYTEKQRSFMHFLTGVCAIIGGIFTVAGLIDSMIYH 382          
BLAST of EWM28250.1 vs. NCBI_GenBank
Match: gi|762103987|ref|XP_011434519.1| (PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Crassostrea gigas])

HSP 1 Score: 277.715 bits (709), Expect = 2.793e-86
Identity = 145/405 (35.80%), Postives = 233/405 (57.53%), Query Frame = 0
Query:   13 LYERLRRLDYHPKTKDDFKVRTAYGGATSVVALACMIFLFFTELKYSMEKEIVDHMYVNSSRDTRLLFNFNLTFPSVSCSLLSADALDPLGNKQEGVESHVFKTRLDSMGNPIAAKTWHKLGDTFTEEDLLLKHEEDSRAQLEEEEEQEEKLGEEGDGQQVGEDGKPRGRNLKRRKCGDCYGAGEPG--QCCNTCAEVKQAYDSKGWAFIGLN-VEQCKQENLQVSFGDGAEEGCNIHGSLLLTHDSGNVHFAPGEQLRQSGALNVADLVTFTFLQFNVSHEIHHLSLGEEFPGFRSPLSNQKRSVADGYGMYQYYLKVVPTIYKHLSQPPTVSNQYAVSEHIRHINPG-SNRGLPGVWFFYDTSPVHVEFQERRKGLLPFLTSVCAIVGGVFSVFGVVDGVVHN 413
             YERLR+ D +PKT +DF+V+T  G   +V++   M+ LF +EL Y + K++   ++V+++R  +L  N ++ FP V C+ LS DA+D  G +Q  V+ H+FK RL++ G  I                             ++ E ++E+LG++       +  +   + L   +C  CYGA E G  +CCNTC +V++AY  KGWAF     +EQC +E          +EGC ++G L +    GN HFAPG+  +Q   ++V DL  F   +FN+SH I HLS G+++PG  +PL    +   D   M+QYY+KVVPT Y  +      +NQY+V++H + +  G  + GLPGV+F Y+ SP+ V++ E+++  + FLT VCAI+GG+F+V G++D ++++
Sbjct:    6 FYERLRQFDAYPKTLEDFRVKTFGGALVTVISSLLMVILFISELNYYLTKDVQPELFVDTTRGQKLRINIDIDFPKVPCAYLSIDAMDVSGEQQLDVDHHLFKQRLNADGEKI-----------------------------KDTEPEKEELGDKSK-----DAVEAVTKKLDPDRCESCYGA-ETGDLKCCNTCEDVREAYRKKGWAFNSPEGIEQCNREGWTAKMKAQQKEGCQVYGYLEVNKVQGNFHFAPGKSFQQH-HVHVHDLQAFGGQKFNLSHAIRHLSFGQDYPGIINPLDQTSQISEDEQTMFQYYVKVVPTTYVDVKGKTLYTNQYSVNKHSKTVGNGMGDSGLPGVFFIYELSPMMVKYTEKQRSFMHFLTGVCAIIGGIFTVAGLIDSMIYH 374          
The following BLAST results are available for this feature:
BLAST of EWM28250.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110595|gb|EWM28250.1|0.000e+0100.00endoplasmic reticulum-golgi intermediate compartme... [more]
gi|676381695|ref|XP_009034126.1|4.685e-9441.22hypothetical protein AURANDRAFT_2571, partial [Aur... [more]
gi|1173953369|gb|OQS00917.1|6.902e-9438.24golgi family protein [Achlya hypogyna][more]
gi|669155406|ref|XP_008613265.1|2.731e-9337.99hypothetical protein SDRG_09129 [Saprolegnia dicli... [more]
gi|219111025|ref|XP_002177264.1|1.029e-8937.23predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210519469|dbj|GAX21593.1|3.989e-8938.44hypothetical protein FisN_29Hh026 [Fistulifera sol... [more]
gi|1072231880|gb|OEU16612.1|5.014e-8937.92DUF1692-domain-containing protein [Fragilariopsis ... [more]
gi|1210526334|dbj|GAX14822.1|3.802e-8838.20hypothetical protein FisN_29Lh026 [Fistulifera sol... [more]
gi|405966014|gb|EKC31342.1|9.138e-8736.79Endoplasmic reticulum-Golgi intermediate compartme... [more]
gi|762103987|ref|XP_011434519.1|2.793e-8635.80PREDICTED: endoplasmic reticulum-Golgi intermediat... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2401rna2401Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications