|
|
Properties
| Property Name | Value |
|---|
| Product | dna polymerase kappa |
| Orig transcript id | gnl|cribi|Naga_100321g4.7989.mrna |
| Orig protein id | gnl|cribi|Naga_100321g4.7989 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:601487..604563 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna240 ID=rna240|Name=rna240|organism=Nannochloropsis gaditana|type=mRNA|length=1556bp
TTTCGATAATCTTGTCAGCTTACTCTCTGCGATGTGAAGAACAACATGCT
GACTATTTGCCATCGTGTCATCGCCCTTTTCCCTCTCTCCACAGAAAGGA
CGCTGAGCATCTGCGTTCATTGTAAATACGACTTTTTACAAAACAGAAGG
ATTTGGGGCACTAGAGGATTCCTAACATTGATATTGACAGGGCCTCTTTT
TATAACCGCATGACCGCCGCCTATCCTCCTATCGCCTAATATGACCATGG
GCGGAGCTTTCACTCACATTCTCCGCTCCAGCTGGGTTTCAAACCTGCTA
TGGACCGGCGGCGGCCTTCTGGCATTGGGCTTGGGCACGCTGTATTATTT
TCAAGACAATTTGCTGTACCATCCCTCCATCCCAGGCATGCCCAAGTCTC
CCCGAGAGAACCCCCCCGGATATCGCTCTCCGGCCGAACACGGCATCCAC
AACTTTGAAGAGCACTTCCTCAAAACTGAAGATGGCGCAACTATTCACGC
TTGGCTCTTGCTTCAACCTGACTCAGCCAGCATCCCCACGGTCGTGTACT
TTCACGGGAACGCGGGGAACATGGGCTTCCGTCTTCCACACGGCAGCAAT
CTGTACAAACAATGCCGGGTGAATGTGATGATGGTGGATTATAGAGGTTA
CGGCTCCAGTAAAGGTACGCCAAGCGAGGAAGGCCTCAAGGCGGACGGAC
GCGCGGTCCTGACCACCCTGCGTGCCCATCGGCGGGTGGCGCCCGATCAG
ATCGTGCTTTACGGCAAATCACTGGGAGGAGCCGTTGCTTTGGCCTTGGC
TGAGGAGCGCCCGGATGAAGTTCTGGCAGTGGTATTGGAAAACACTTTTT
TGAGCATTCCAGCCATGGTCGACGTGCTCATGCCCCTAGTCAAGATCTTC
AAAGGGCTGATCCTGCGGATCGGTTGGCGCAACGACAGGCGCGTGAGCCA
GCTGGCCCACCCCATCCTCTTTATGTCCGGCCTCGCCGACGAGCTAGTTC
CTCCGTCGCACATGCGTCAGCTCAAAGAGCTGGCGGTTCGCTCTGTCTGG
GCTCAGTTGTATACCGTCGCAGACGGCCAACACAACGATACGTGGTTTCG
GGGCGGCATCGCTTACTACCGCAACTTCCGGGACTTCCTTGGAAAGGTAG
CGGAGTTGGTTGCAGAAGGCAAAGCGGGAAGCAAGGCTACCAACGCTCAG
AATGTATGTGCGTCGACCAGCTCCGTGACGGCAAACGTAGGTGGAGAAGG
TCTGCAAGAGGGTATAGCAGGGGGAAGCATTCCAGTCATGCCTCCTGCCT
CGCTTTACAACGTCCCTAGTACCGCGGCTTCCGTCGATTTAAAGACCAAG
AAAAGCGATTGAAGAAGTACTCGTTGTGTGGGAGGAGTGTAGGTCAGCAA
GTGAAACAATCTCCGCAAATGCTAGTTCGCGTGTGAATCATGTATAAAGC
CAAATGAAAAAATTATCAGCTGACTCTCGCTTGTAATTCGGCTCACACAT
CATATTTATTGGGCTTTCTGATTACATCGTGGTGGGGCGTCGCGAGTTTG
ACCCGA back to topprotein sequence of rna240 >rna240-protein ID=rna240-protein|Name=rna240|organism=Nannochloropsis gaditana|type=polypeptide|length=826bp
MAGKNASMEDIVGNDADEEDFFFTQTQEDGDEVWESDMEDARGRNTSSAS
PSALGANSDTVIQRSGHTKHCLSSAEKKVVHSEQNTSALPLPDGADAVIS
RTSPSHSFPRSTSGPQKTASTCYVAALDSTRHTRHFYTFLGDKAGMDEKK
RSREEVERIVHEASKNSKFFLAQQRNDLKVQERIQVMQSKLNMLSEPLRR
SLEAEADRELAAAEKAYRTWRQVCVVVDLDAFFTSVEERDEPALREVPFA
VGGGVISTANYEARKYGVRSAMPLFIARKLCPQLLVRSTRFEAYQTVAEQ
TRAIFRDYDPRFRAGSLDEAYLDLTAYVHAAVGDQGGEPPTPEEKPGTPL
FAPVTALSSGFRGVEDNEGEGGAAWGAMGVDEEEEEVRERAIQEREASYW
GVAERVVEEIRRRIHGVTGVTASAGIATSFCLAKMASNENKPNGQFRVGD
VASFLRDAPVRKVSGIGRITERCLVAGLDVQTCFQLWAKRALLYHVYTPQ
TARWLLCKSVGLDGGGLVDPEEGPGGQRTGRKGISRERTFAALSRKEDLL
EKLRLICDSLAADMAREGLKAKNLTLKLKSSDFAVTTRAKNCAFYVSTSQ
ELYQHALSLLLPQLPVTLRLMGVRASHFQPKPQAPPKGQGCLEAYVATGL
EAAMAERPPSGSAKRVASPSSLGRPPRLGESGSFSTGPPLLVVDADLLSP
AGGGKEATRATVTKQVPVYTCPLCNQRLSVVLSELNRHVDSCLRESDPYF
LEKEMPEESKKGDVHRAGTKPCDAEDKATANKKSRRSENVNCSSRGGKKK
KLPPARPDAKPLEHFFGSNSRRPTTM back to topmRNA from alignment at CM002455.1:601487..604563- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna240 ID=rna240|Name=rna240|organism=Nannochloropsis gaditana|type=mRNA|length=3077bp|location=Sequence derived from alignment at CM002455.1:601487..604563- (Nannochloropsis gaditana)
AGCACAAACGACAATTTATAGAATCGTGGGTAGGACTGCACCAATCTGCC
CGTATGTAATTTTATTGGCAAACTGTTTCCGCTGCTTCTCCTGGCTTCAT
GCTGATCCAAAGCCCGGAAAAGTGGACGCAATTTTGATCTAAAGCGGGCA
TAGCGTTGACCTGTGTGTTGAAAAACAAATTTTGCTCAATCCTCGTCGGT
GTGTTAGCTCGCGCCTTTCCACAACATGAGTCAAAGCCCAAGAAAGCTGT
CGATGTCTCAGTCACCCACATCGCTGAAAAGGACCTCGAGTCCTCAAGCG
AGGGCCTGCGCGCTGGCGCTTTGCCGGATTGATGTCAGGAATCCAATTTA
AAGCATAACATCATTTTCGCACGATGCGTAGGAGTGGCCAGGAGTAGGAG
TGGCCAGGATCTTGTCATGACTGCAGGCACCCGCGAGTTTTCGCTTCAGG
GGCGATGACGACGGGCAAAGCCGACCTCCTGCCTGTGTTACAGTACCGGG
AGAGGGTTAGGCTTTAAAAGCACTCGCATTTCTTGAACGACATTGGTCAG
TACGACACGGCCATGGCGGGGAAAAATGCTAGCATGGAAGATATTGTCGG
AAATGACGCGGACGAAGAGGATTTTTTTTTCACGCAGACGCAGGAGGATG
GAGACGAGGTGTGGGAATCGGATATGGAGGACGCCCGCGGCCGCAACACT
TCATCCGCCTCACCATCTGCATTGGGTGCAAATTCAGATACTGTTATACA
AAGATCCGGGCATACGAAACATTGTCTATCAAGCGCGGAAAAGAAAGTGG
TCCATTCTGAGCAAAACACTTCTGCCCTCCCTCTTCCTGACGGTGCGGAT
GCTGTCATTTCCCGCACCTCACCATCCCACTCATTTCCTCGCAGTACCTC
TGGCCCGCAGAAGACGGCTAGTACATGTTATGTGGCAGCGCTGGATAGCA
CGAGGCATACAAGGCATTTCTACACCTTTCTTGGTGACAAGGCGGGCATG
GACGAGAAGAAGCGATCGAGGGAGGAGGTCGAACGCATCGTGCACGAAGC
TTCCAAGAACAGTAAGTTCTTTCTTGCTCAACAAAGAAATGACCTCAAGG
TTCAAGAGCGGATTCAGGTGATGCAATCCAAGCTGAATATGTTGTCAGAG
CCGCTCCGTCGTAGCCTGGAGGCAGAGGCGGACAGAGAGTTGGCGGCGGC
GGAGAAAGCGTATCGAACTTGGCGCCAGGTCTGCGTCGTGGTCGACTTGG
ACGCATTCTTCACCTCCGTGGAAGAGCGGGACGAGCCAGCTCTGAGGGAG
GTCCCTTTTGCCGTCGGTGGCGGCGTCATCTCCACGGCCAATTACGAGGC
CAGAAAATACGGCGTGCGGAGCGCCATGCCGCTCTTCATCGCCCGGAAGC
TCTGTCCCCAGCTCTTGGTTCGCTCTACGCGCTTCGAGGCCTATCAGACG
GTGGCGGAGCAAACGCGGGCAATTTTTCGGGACTATGACCCTCGCTTCCG
CGCCGGGAGTCTGGACGAGGCGTATCTGGACCTGACAGCCTACGTGCACG
CGGCGGTAGGCGACCAGGGCGGGGAGCCTCCGACGCCGGAGGAGAAGCCC
GGCACGCCCTTGTTCGCCCCCGTGACGGCTTTGTCGAGTGGCTTCCGGGG
TGTAGAGGACAATGAGGGGGAGGGAGGAGCGGCTTGGGGCGCCATGGGAG
TGGATGAGGAAGAAGAGGAAGTGCGAGAGAGGGCAATACAAGAGAGGGAG
GCATCCTATTGGGGAGTTGCGGAGAGGGTCGTGGAGGAGATACGTCGGCG
CATCCATGGGGTGACAGGCGTGACTGCCAGTGCCGGCATTGCGACGAGCT
TCTGTCTGGCCAAAATGGCGTCCAACGAGAACAAACCGAACGGACAGTTT
CGAGTCGGAGACGTGGCAAGCTTCTTGAGGGACGCGCCAGTGCGTAAAGT
GAGCGGAATAGGGCGCATCACGGAAAGGTGTCTGGTCGCTGGCCTGGACG
TGCAGACATGCTTCCAGTTGTGGGCCAAGCGGGCCCTCCTCTACCATGTC
TACACGCCACAGACCGCCCGCTGGCTCCTCTGCAAGAGCGTCGGCCTTGA
CGGGGGGGGGCTTGTTGATCCGGAGGAGGGGCCCGGTGGACAGAGGACTG
GGCGGAAGGGGATCAGCCGGGAGCGAACCTTCGCGGCCCTGAGTCGGAAA
GAGGACCTGTTGGAGAAGCTCCGACTGATTTGCGATTCCCTCGCTGCGGA
CATGGCCCGAGAGGGACTCAAAGCCAAGAACCTCACGCTCAAACTCAAGA
GCAGCGACTTTGCCGTGACCACCAGGGCGAAGAATTGCGCATTCTACGTC
TCCACATCTCAAGAGCTGTACCAGCACGCGCTCTCCCTCCTCTTGCCGCA
GCTGCCTGTCACCCTCCGGCTCATGGGGGTCCGTGCCTCCCACTTTCAGC
CCAAGCCTCAGGCGCCTCCCAAAGGCCAAGGGTGCCTGGAGGCCTATGTG
GCCACGGGCCTCGAGGCTGCAATGGCCGAGAGACCACCCTCGGGGTCTGC
GAAAAGAGTCGCGTCTCCATCTTCACTGGGGAGGCCGCCGCGGTTAGGAG
AGAGCGGGTCGTTTTCCACCGGGCCGCCGCTTCTTGTTGTGGACGCTGAC
CTCCTATCCCCTGCAGGGGGAGGAAAAGAGGCGACGCGGGCCACGGTGAC
GAAGCAAGTTCCTGTCTATACGTGCCCTCTGTGTAACCAGCGCCTGTCTG
TGGTCCTGTCAGAATTAAACAGGCATGTCGATTCCTGCCTTCGGGAGTCG
GACCCGTACTTTCTGGAAAAAGAGATGCCGGAAGAATCGAAGAAAGGAGA
TGTACATCGAGCGGGAACCAAGCCATGCGATGCAGAGGATAAGGCCACAG
CCAACAAAAAGTCCAGGCGGTCTGAAAATGTAAATTGTAGCAGCAGGGGG
GGGAAGAAAAAAAAACTACCGCCGGCGCGGCCTGATGCCAAGCCTCTCGA
GCACTTCTTCGGGTCAAACTCGCGACGCCCCACCACGATGTAATCAGAAA
GCCCAATAAATATGATGTGTGAGCCGA back to topCoding sequence (CDS) from alignment at CM002455.1:601487..604563- >rna240 ID=rna240|Name=rna240|organism=Nannochloropsis gaditana|type=CDS|length=2481bp|location=Sequence derived from alignment at CM002455.1:601487..604563- (Nannochloropsis gaditana)
ATGGCGGGGAAAAATGCTAGCATGGAAGATATTGTCGGAAATGACGCGGA
CGAAGAGGATTTTTTTTTCACGCAGACGCAGGAGGATGGAGACGAGGTGT
GGGAATCGGATATGGAGGACGCCCGCGGCCGCAACACTTCATCCGCCTCA
CCATCTGCATTGGGTGCAAATTCAGATACTGTTATACAAAGATCCGGGCA
TACGAAACATTGTCTATCAAGCGCGGAAAAGAAAGTGGTCCATTCTGAGC
AAAACACTTCTGCCCTCCCTCTTCCTGACGGTGCGGATGCTGTCATTTCC
CGCACCTCACCATCCCACTCATTTCCTCGCAGTACCTCTGGCCCGCAGAA
GACGGCTAGTACATGTTATGTGGCAGCGCTGGATAGCACGAGGCATACAA
GGCATTTCTACACCTTTCTTGGTGACAAGGCGGGCATGGACGAGAAGAAG
CGATCGAGGGAGGAGGTCGAACGCATCGTGCACGAAGCTTCCAAGAACAG
TAAGTTCTTTCTTGCTCAACAAAGAAATGACCTCAAGGTTCAAGAGCGGA
TTCAGGTGATGCAATCCAAGCTGAATATGTTGTCAGAGCCGCTCCGTCGT
AGCCTGGAGGCAGAGGCGGACAGAGAGTTGGCGGCGGCGGAGAAAGCGTA
TCGAACTTGGCGCCAGGTCTGCGTCGTGGTCGACTTGGACGCATTCTTCA
CCTCCGTGGAAGAGCGGGACGAGCCAGCTCTGAGGGAGGTCCCTTTTGCC
GTCGGTGGCGGCGTCATCTCCACGGCCAATTACGAGGCCAGAAAATACGG
CGTGCGGAGCGCCATGCCGCTCTTCATCGCCCGGAAGCTCTGTCCCCAGC
TCTTGGTTCGCTCTACGCGCTTCGAGGCCTATCAGACGGTGGCGGAGCAA
ACGCGGGCAATTTTTCGGGACTATGACCCTCGCTTCCGCGCCGGGAGTCT
GGACGAGGCGTATCTGGACCTGACAGCCTACGTGCACGCGGCGGTAGGCG
ACCAGGGCGGGGAGCCTCCGACGCCGGAGGAGAAGCCCGGCACGCCCTTG
TTCGCCCCCGTGACGGCTTTGTCGAGTGGCTTCCGGGGTGTAGAGGACAA
TGAGGGGGAGGGAGGAGCGGCTTGGGGCGCCATGGGAGTGGATGAGGAAG
AAGAGGAAGTGCGAGAGAGGGCAATACAAGAGAGGGAGGCATCCTATTGG
GGAGTTGCGGAGAGGGTCGTGGAGGAGATACGTCGGCGCATCCATGGGGT
GACAGGCGTGACTGCCAGTGCCGGCATTGCGACGAGCTTCTGTCTGGCCA
AAATGGCGTCCAACGAGAACAAACCGAACGGACAGTTTCGAGTCGGAGAC
GTGGCAAGCTTCTTGAGGGACGCGCCAGTGCGTAAAGTGAGCGGAATAGG
GCGCATCACGGAAAGGTGTCTGGTCGCTGGCCTGGACGTGCAGACATGCT
TCCAGTTGTGGGCCAAGCGGGCCCTCCTCTACCATGTCTACACGCCACAG
ACCGCCCGCTGGCTCCTCTGCAAGAGCGTCGGCCTTGACGGGGGGGGGCT
TGTTGATCCGGAGGAGGGGCCCGGTGGACAGAGGACTGGGCGGAAGGGGA
TCAGCCGGGAGCGAACCTTCGCGGCCCTGAGTCGGAAAGAGGACCTGTTG
GAGAAGCTCCGACTGATTTGCGATTCCCTCGCTGCGGACATGGCCCGAGA
GGGACTCAAAGCCAAGAACCTCACGCTCAAACTCAAGAGCAGCGACTTTG
CCGTGACCACCAGGGCGAAGAATTGCGCATTCTACGTCTCCACATCTCAA
GAGCTGTACCAGCACGCGCTCTCCCTCCTCTTGCCGCAGCTGCCTGTCAC
CCTCCGGCTCATGGGGGTCCGTGCCTCCCACTTTCAGCCCAAGCCTCAGG
CGCCTCCCAAAGGCCAAGGGTGCCTGGAGGCCTATGTGGCCACGGGCCTC
GAGGCTGCAATGGCCGAGAGACCACCCTCGGGGTCTGCGAAAAGAGTCGC
GTCTCCATCTTCACTGGGGAGGCCGCCGCGGTTAGGAGAGAGCGGGTCGT
TTTCCACCGGGCCGCCGCTTCTTGTTGTGGACGCTGACCTCCTATCCCCT
GCAGGGGGAGGAAAAGAGGCGACGCGGGCCACGGTGACGAAGCAAGTTCC
TGTCTATACGTGCCCTCTGTGTAACCAGCGCCTGTCTGTGGTCCTGTCAG
AATTAAACAGGCATGTCGATTCCTGCCTTCGGGAGTCGGACCCGTACTTT
CTGGAAAAAGAGATGCCGGAAGAATCGAAGAAAGGAGATGTACATCGAGC
GGGAACCAAGCCATGCGATGCAGAGGATAAGGCCACAGCCAACAAAAAGT
CCAGGCGGTCTGAAAATGTAAATTGTAGCAGCAGGGGGGGGAAGAAAAAA
AAACTACCGCCGGCGCGGCCTGATGCCAAGCCTCTCGAGCACTTCTTCGG
GTCAAACTCGCGACGCCCCACCACGATGTAA back to top
|