rna2391, rna2391 (mRNA) Nannochloropsis gaditana

Overview
Namerna2391
Unique Namerna2391
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1302
Alignment locationCM002459.1:272276..273624 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g22.9152.mrna
Orig protein idgnl|cribi|Naga_100004g22.9152
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:272276..273624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g22gene2285Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2391rna2391-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28221.1cds2383Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2391 ID=rna2391|Name=rna2391|organism=Nannochloropsis gaditana|type=mRNA|length=1302bp
ATGATCCGCAACCTAGCACCAGCCTTGCGGCCCAGATGTACTGTCATCCG
CCCGTCAGGTTCGGATACAAGCAGGTGCAAAGGCGGCCGCAGCTGCAACA
GGCCTCTTCGTCGGGCATGGCGCAGCCTGTCTTCTTTCCCTCCCACGTCT
CCGCTGGTGGCCTCCATCACGGGAAAAGCGGAGAGGCAACATAAATGGCG
CAGTCCACGACGAGCGTGTTCCCACAATTTATCGTCTTCTCCTTCCTCGC
GATCGGCGGCATCCTCTACTTTGAAGGCCTCTGAGAAGATAGAGGCCAGC
GCATCTTCACGCCTAAGTGGCGGGGGAGGGGAAGCTGCGGCAGCGTCTCC
GGTGGACATCACCTTCATAGACGACAATGCTTCTCAAAAACCATTGCCTG
TCCAGGAAGTTGCGTTCCCATGGCGCCCGGCGCCCCGTCGGCCTGCTGCA
CCACGCTATGCGTCTTACGGGGAGTGGTTCACCCAAATTTTGTTTCAGGC
CACCCTCCGCGGTACTTTCAACAAACTGCTATCCAAGGAAATGGAATGCC
TTCCTCGCGCCGTCCAAGAGCGTCTCTTCCGCTATATGCGCTTTGCCTTC
ATTCAGGGAGTGCGCGGGATTTTCGATGGGCAATGTAAAACGCCACGGCC
CACGTTGGAATTCTCTCGGGAAGACCCCACGCCTCCTTCCTCCACCTGGG
ATATGGGCTATCCACCCCTTTCCGCCATGATGGACGAGGCGCTGGTCATG
ACTTACAAAGACGTTATGGCGCGTTTCAAAGCGAACAAGCGGGAGGTGCG
TCTGGAGCTGGAGAGCATCGTCCCTGTTGCCATGCACGACTACCGCATGT
CGATGGGCCCTCCGCGAGGCTCCCCCCAACGCGCAGCCATGGCCAAGCAC
AAGTTCTTTGGTTTGACTACCTTCTCAGACCAGCCAATAGACATTGACGG
ACCCATGACGGACACCCTGGCCGCTTACGTGCGGGTCATGTCCCGGAACC
CTCGGATAGGATTTCACATCGCCGTTACATTCCGGTGTCGGGAGCTCTTT
TGTGTCCGTAACACCGATACAGGGGAGGTGTTGCAAGGGGAGGACGGGAT
CAGGGAAGTGGACCACGTGGCGCGGTTCGACGTGGAGTTGGACCAGAAAG
CGCAGGTGACGCAAGACTGGCGCATCGTGGACATCGACGGGTGGACGCAG
GCGAGGGAAGGGGAGGTTGAAGAGGACGAGGAGGAAAAAGGGGAGCCGTC
GGGAGATAGGAGGGAGGGTGGCGGAGCGCAGGAACGTGGGAAGGATGATT
GA
back to top

protein sequence of rna2391

>rna2391-protein ID=rna2391-protein|Name=rna2391|organism=Nannochloropsis gaditana|type=polypeptide|length=397bp
MTRYLAWPRRLVYGSWRHGQGSAFATCNKPCLRFNRIRRLAMVCIRPSHS
FSKPISLWLQDQLFKRFTSRQVLPFPTPTHVQVEATEPQIKPSRGSHVDG
KQVGLSEAAETEEKQGKWSSPGGYEPFPWGSAPEAEVSAFGPQEKSMFQR
LRYYLSTLVVREMLAKKVAMHTNAVKRDVFRSLSGSTRFAFIQAVRAIFE
GTCKTPEPTWKLTYHDARSPSSEWELGYPPLSAMMEPKLASLYENLVSSF
RAKDLEVRYELESIRVLSLAGFRAIVGLREAQEKPERSSVNIGALSLVFG
KPVTVPSESERKEPVPISILYRMAVTFRCRELFTVRNSGTGEVLQGEDRM
KEVDHVARFEVKVDEEKKAPFEWILVDIDDQLEGNEYFKDMLESKKP
back to top

mRNA from alignment at CM002459.1:272276..273624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2391 ID=rna2391|Name=rna2391|organism=Nannochloropsis gaditana|type=mRNA|length=1349bp|location=Sequence derived from alignment at CM002459.1:272276..273624- (Nannochloropsis gaditana)
ATGACGCGTTATTTAGCATGGCCAAGGCGGCTCGTCTATGGTAGCTGGAG
ACACGGTCAAGGCAGCGCTTTCGCCACATGTAACAAGCCTTGCCTTCGCT
TCAACCGCATACGGCGTTTAGCAATGGTATGCATAAGACCCTCTCATTCT
TTTTCCAAGCCAATCTCTTTATGGCTCCAAGACCAGCTCTTCAAGAGGTT
TACTTCACGTCAAGTCCTGCCCTTTCCTACGCCCACGCATGTTCAAGTCG
AAGCCACCGAACCACAAATCAAGCCTAGTAGGGGTAGTCACGTAGATGGG
AAGCAAGTGGGGTTATCAGAAGCTGCTGAGACGGAGGAAAAGCAGGGAAA
ATGGTCATCACCTGGTGGATACGAGCCATTTCCATGGGGGTCAGCGCCCG
AGGCTGAGGTATCGGCTTTCGGGCCTCAGGAAAAATCTATGTTCCAGCGA
TTGAGATACTACCTGTCCACTTTAGTCGTGCGAGAAATGCTAGCAAAGAA
GGTGGCAATGCACACGAATGCTGTGAAGAGAGACGTGTTTCGATCCCTCA
GTGGGTCTACACGCTTCGCCTTCATCCAAGCGGTTCGCGCCATTTTCGAA
GGCACGTGTAAGACGCCCGAGCCGACGTGGAAGCTCACATACCATGATGC
CCGCTCTCCGTCCTCGGAATGGGAACTCGGCTACCCTCCTCTCTCTGCCA
TGATGGAGCCTAAACTTGCCAGCTTGTACGAAAACCTGGTCTCTAGCTTT
CGCGCCAAAGACCTGGAAGTGCGGTATGAGCTGGAGAGCATCCGGGTACT
CAGTTTGGCGGGGTTTCGAGCAATAGTTGGATTGCGAGAGGCCCAGGAGA
AGCCGGAACGGTCATCGGTGAACATTGGGGCGCTGTCGCTGGTTTTCGGG
AAGCCAGTCACCGTGCCCTCGGAGTCAGAGAGGAAAGAACCTGTGCCTAT
TAGCATTTTGTACCGCATGGCCGTCACTTTCCGCTGTCGCGAGCTCTTCA
CGGTACGAAACTCGGGGACAGGGGAAGTGCTGCAGGGGGAAGACAGGATG
AAAGAAGTGGACCATGTGGCCCGCTTTGAGGTAAAGGTCGACGAAGAAAA
GGTAAGAGGGAGCGAGGGGGATGATGGTAATGGGGTTAGACATCCGGTTG
GGCGAAATTATGCGATATGTCGCTCTAGCTCTGTCATTTTACCGTGAAAC
GACGGGGTCCTCACGATATCATGGACATGCCTGCATGCCCCCCACCATGA
TTACAGAAAGCACCGTTCGAGTGGATTCTGGTAGACATCGACGATCAGCT
GGAGGGGAATGAGTATTTCAAAGATATGCTTGAAAGCAAAAAGCCGTAA
back to top

Coding sequence (CDS) from alignment at CM002459.1:272276..273624-

>rna2391 ID=rna2391|Name=rna2391|organism=Nannochloropsis gaditana|type=CDS|length=2388bp|location=Sequence derived from alignment at CM002459.1:272276..273624- (Nannochloropsis gaditana)
AAAGCACCGTTCGAGTGGATTCTGGTAGACATCGACGATCAGCTGGAGGG
GAATGAGTATTTCAAAGATATGCTTGAAAGCAAAAAGCCGTAAATGACGC
GTTATTTAGCATGGCCAAGGCGGCTCGTCTATGGTAGCTGGAGACACGGT
CAAGGCAGCGCTTTCGCCACATGTAACAAGCCTTGCCTTCGCTTCAACCG
CATACGGCGTTTAGCAATGGTATGCATAAGACCCTCTCATTCTTTTTCCA
AGCCAATCTCTTTATGGCTCCAAGACCAGCTCTTCAAGAGGTTTACTTCA
CGTCAAGTCCTGCCCTTTCCTACGCCCACGCATGTTCAAGTCGAAGCCAC
CGAACCACAAATCAAGCCTAGTAGGGGTAGTCACGTAGATGGGAAGCAAG
TGGGGTTATCAGAAGCTGCTGAGACGGAGGAAAAGCAGGGAAAATGGTCA
TCACCTGGTGGATACGAGCCATTTCCATGGGGGTCAGCGCCCGAGGCTGA
GGTATCGGCTTTCGGGCCTCAGGAAAAATCTATGTTCCAGCGATTGAGAT
ACTACCTGTCCACTTTAGTCGTGCGAGAAATGCTAGCAAAGAAGGTGGCA
ATGCACACGAATGCTGTGAAGAGAGACGTGTTTCGATCCCTCAGTGGGTC
TACACGCTTCGCCTTCATCCAAGCGGTTCGCGCCATTTTCGAAGGCACGT
GTAAGACGCCCGAGCCGACGTGGAAGCTCACATACCATGATGCCCGCTCT
CCGTCCTCGGAATGGGAACTCGGCTACCCTCCTCTCTCTGCCATGATGGA
GCCTAAACTTGCCAGCTTGTACGAAAACCTGGTCTCTAGCTTTCGCGCCA
AAGACCTGGAAGTGCGGTATGAGCTGGAGAGCATCCGGGTACTCAGTTTG
GCGGGGTTTCGAGCAATAGTTGGATTGCGAGAGGCCCAGGAGAAGCCGGA
ACGGTCATCGGTGAACATTGGGGCGCTGTCGCTGGTTTTCGGGAAGCCAG
TCACCGTGCCCTCGGAGTCAGAGAGGAAAGAACCTGTGCCTATTAGCATT
TTGTACCGCATGGCCGTCACTTTCCGCTGTCGCGAGCTCTTCACGGTACG
AAACTCGGGGACAGGGGAAGTGCTGCAGGGGGAAGACAGGATGAAAGAAG
TGGACCATGTGGCCCGCTTTGAGGTAAAGGTCGACGAAGAAAAGAAAGCA
CCGTTCGAGTGGATTCTGGTAGACATCGACGATCAGCTGGAGGGGAATGA
GTATTTCAAAGATATGCTTGAAAGCAAAAAGCCGTAAATGACGCGTTATT
TAGCATGGCCAAGGCGGCTCGTCTATGGTAGCTGGAGACACGGTCAAGGC
AGCGCTTTCGCCACATGTAACAAGCCTTGCCTTCGCTTCAACCGCATACG
GCGTTTAGCAATGGTATGCATAAGACCCTCTCATTCTTTTTCCAAGCCAA
TCTCTTTATGGCTCCAAGACCAGCTCTTCAAGAGGTTTACTTCACGTCAA
GTCCTGCCCTTTCCTACGCCCACGCATGTTCAAGTCGAAGCCACCGAACC
ACAAATCAAGCCTAGTAGGGGTAGTCACGTAGATGGGAAGCAAGTGGGGT
TATCAGAAGCTGCTGAGACGGAGGAAAAGCAGGGAAAATGGTCATCACCT
GGTGGATACGAGCCATTTCCATGGGGGTCAGCGCCCGAGGCTGAGGTATC
GGCTTTCGGGCCTCAGGAAAAATCTATGTTCCAGCGATTGAGATACTACC
TGTCCACTTTAGTCGTGCGAGAAATGCTAGCAAAGAAGGTGGCAATGCAC
ACGAATGCTGTGAAGAGAGACGTGTTTCGATCCCTCAGTGGGTCTACACG
CTTCGCCTTCATCCAAGCGGTTCGCGCCATTTTCGAAGGCACGTGTAAGA
CGCCCGAGCCGACGTGGAAGCTCACATACCATGATGCCCGCTCTCCGTCC
TCGGAATGGGAACTCGGCTACCCTCCTCTCTCTGCCATGATGGAGCCTAA
ACTTGCCAGCTTGTACGAAAACCTGGTCTCTAGCTTTCGCGCCAAAGACC
TGGAAGTGCGGTATGAGCTGGAGAGCATCCGGGTACTCAGTTTGGCGGGG
TTTCGAGCAATAGTTGGATTGCGAGAGGCCCAGGAGAAGCCGGAACGGTC
ATCGGTGAACATTGGGGCGCTGTCGCTGGTTTTCGGGAAGCCAGTCACCG
TGCCCTCGGAGTCAGAGAGGAAAGAACCTGTGCCTATTAGCATTTTGTAC
CGCATGGCCGTCACTTTCCGCTGTCGCGAGCTCTTCACGGTACGAAACTC
GGGGACAGGGGAAGTGCTGCAGGGGGAAGACAGGATGAAAGAAGTGGACC
ATGTGGCCCGCTTTGAGGTAAAGGTCGACGAAGAAAAG
back to top
Synonyms
Publications