EWM28221.1, cds2383 (CDS) Nannochloropsis gaditana

Overview
NameEWM28221.1
Unique Namecds2383
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:272524..273624 -
Alignment locationCM002459.1:272276..272368 -

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Properties
Property NameValue
Protein idEWM28221.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g22.9152.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:272524..273624 -
CM002459.1supercontigCM002459.1:272276..272368 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28221.1 vs. NCBI_GenBank
Match: gi|585110566|gb|EWM28221.1| (hypothetical protein Naga_100004g22 [Nannochloropsis gaditana])

HSP 1 Score: 818.15 bits (2112), Expect = 0.000e+0
Identity = 397/397 (100.00%), Postives = 397/397 (100.00%), Query Frame = 0 
Query:    1 MTRYLAWPRRLVYGSWRHGQGSAFATCNKPCLRFNRIRRLAMVCIRPSHSFSKPISLWLQDQLFKRFTSRQVLPFPTPTHVQVEATEPQIKPSRGSHVDGKQVGLSEAAETEEKQGKWSSPGGYEPFPWGSAPEAEVSAFGPQEKSMFQRLRYYLSTLVVREMLAKKVAMHTNAVKRDVFRSLSGSTRFAFIQAVRAIFEGTCKTPEPTWKLTYHDARSPSSEWELGYPPLSAMMEPKLASLYENLVSSFRAKDLEVRYELESIRVLSLAGFRAIVGLREAQEKPERSSVNIGALSLVFGKPVTVPSESERKEPVPISILYRMAVTFRCRELFTVRNSGTGEVLQGEDRMKEVDHVARFEVKVDEEKKAPFEWILVDIDDQLEGNEYFKDMLESKKP 397
            MTRYLAWPRRLVYGSWRHGQGSAFATCNKPCLRFNRIRRLAMVCIRPSHSFSKPISLWLQDQLFKRFTSRQVLPFPTPTHVQVEATEPQIKPSRGSHVDGKQVGLSEAAETEEKQGKWSSPGGYEPFPWGSAPEAEVSAFGPQEKSMFQRLRYYLSTLVVREMLAKKVAMHTNAVKRDVFRSLSGSTRFAFIQAVRAIFEGTCKTPEPTWKLTYHDARSPSSEWELGYPPLSAMMEPKLASLYENLVSSFRAKDLEVRYELESIRVLSLAGFRAIVGLREAQEKPERSSVNIGALSLVFGKPVTVPSESERKEPVPISILYRMAVTFRCRELFTVRNSGTGEVLQGEDRMKEVDHVARFEVKVDEEKKAPFEWILVDIDDQLEGNEYFKDMLESKKP
Sbjct:    1 MTRYLAWPRRLVYGSWRHGQGSAFATCNKPCLRFNRIRRLAMVCIRPSHSFSKPISLWLQDQLFKRFTSRQVLPFPTPTHVQVEATEPQIKPSRGSHVDGKQVGLSEAAETEEKQGKWSSPGGYEPFPWGSAPEAEVSAFGPQEKSMFQRLRYYLSTLVVREMLAKKVAMHTNAVKRDVFRSLSGSTRFAFIQAVRAIFEGTCKTPEPTWKLTYHDARSPSSEWELGYPPLSAMMEPKLASLYENLVSSFRAKDLEVRYELESIRVLSLAGFRAIVGLREAQEKPERSSVNIGALSLVFGKPVTVPSESERKEPVPISILYRMAVTFRCRELFTVRNSGTGEVLQGEDRMKEVDHVARFEVKVDEEKKAPFEWILVDIDDQLEGNEYFKDMLESKKP 397
[Close]
BLAST of EWM28221.1 vs. NCBI_GenBank
Match: gi|585110633|gb|EWM28288.1| (hypothetical protein Naga_100004g21 [Nannochloropsis gaditana])

HSP 1 Score: 175.252 bits (443), Expect = 7.538e-47
Identity = 93/228 (40.79%), Postives = 142/228 (62.28%), Query Frame = 0 
Query:  162 EMLAKKVAMHTNAVKRDVFRSLSGSTRFAFIQAVRAIFEGTCKTPEPTWKLTYHDARSPSSEWELGYPPLSAMMEPKLASLYENLVSSFRAKDLEVRYELESIRVLSLAGFRAIVGLREAQEKPERSSV---NIGALSLVFGKPVTVPSESERKEPVPISILYR-------MAVTFRCRELFTVRNSGTGEVLQGEDRMKEVDHVARFEVKVDEEKKAPFEWILVDID 379
            ++L+K++     AV+  +FR +    RFAFIQ VR IF+G CKTP PT + +  D   PSS W++GYPPLSAMM+  L   Y+++++ F+A   EVR ELESI  +++  +R  +G    +  P+R+++       L+    +P+ +           + ++ R       +AVTFRCRELF VRN+ TGEVLQGED ++EVDHVARF+V++D++ +   +W +VDID
Sbjct:  175 KLLSKEMECLPRAVQERLFRYM----RFAFIQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVMTYKDVMARFKANKREVRLELESIVPVAMHDYRMSMG--PPRGSPQRAAMAKHKFFGLTTFSDQPIDIDGPMTDTLAAYVRVMSRNPRIGFHIAVTFRCRELFCVRNTDTGEVLQGEDGIREVDHVARFDVELDQKAQVTQDWRIVDID 396
The following BLAST results are available for this feature:
BLAST of EWM28221.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110566|gb|EWM28221.1|0.000e+0100.00hypothetical protein Naga_100004g22 [Nannochlorops... [more]
gi|585110633|gb|EWM28288.1|7.538e-4740.79hypothetical protein Naga_100004g21 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2391rna2391Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications