rna2390, rna2390 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2390
Unique Name	rna2390
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2468
Alignment location	CM002459.1:269984..271487 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g21.9219.mrna
Orig protein id	gnl\|cribi\|Naga_100004g21.9219
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:269984..271487 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g21	gene2284	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2390	rna2390-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28288.1	cds2382	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:269984..271487-
coding sequence from alignment at CM002459.1:269984..271487-

mRNA sequence

>rna2390 ID=rna2390|Name=rna2390|organism=Nannochloropsis gaditana|type=mRNA|length=2468bp
AGACAAGGAATTAAATGGCCCCGGCCCTTCTAAACTTCAATTACATCGTT
TTTGGACGAGGAGAAAGCGTTTCTTTCATCCACGTGATATACACGCATGC
TCCACAACAGGATACGCAAAGAGGGATATGCATTTTTGCCAGCCATCCGT
TCCTCCCAGTGGTTCAGATAACTGGAGGCTACGGCCACGCTCCAGGCCTG
GCATGGCACATCGACAGCCCTTTCATGTCAGATTTTTCATATCAGTGGCG
GCCTGTGCGGCTTGGACGGGTAGATACTCGAGCGTACAAGGTTTTGCGCC
ACCTGCAAGGCCACTACACACAAAAATTGAGGGGATGCACTGTCACGTCC
AGCCTCTGTCCACCGCTCAGAGTTTTTCCGTGCACCGTGAGCAACCACAC
CTGGACCGGACACCAAAAAGAAAATTGACCCTTCTGACAATGGCTCGAGG
CAACAGTGGCGGAAGAAGCACGGGGAAGGGTAAACAGCGGGGCAGGAAAG
ACACCACAGCGCCGGGTAGCCCGCCATCATCAGACTCCTCCTTTCCGAGC
AGCACCCGCGGCGATTTTGAGGAGGAGGGCAGCGGGGACATTGACGACGA
TGTCGATGCCCTGATGGACGACGAGGGGGACGACTACGTCTTCAATCCTG
CAGACTTTCCCCTACTGGAAGGGGAAATCGATTTCTTCGGCGACTTGGAT
GGCTTGGAGGAAACGGAGGAATCTCGCGTCCTGCCAGGCGCTCAGCCACT
GGATACATCGGGAGGTATCACGCCTAAGAAGAAGGCAGTAAAACTGCCGG
TGCTTGCCGTGATTGGGCGGCCCAACGTTGGGAAATCTACGATCGTGAAT
CGGCTCTGCCGGACCATGAGCACGGAGCCGGACGCCATAGTCTACGACTA
CGAGGGCGTGACTCGCGACAGGATATATCGGAAAGCGGAATGGAACGGCC
GAGTCTTCGAGGTGGTGGACACGGGGGGGCTGATCTTCGACGAAGACCAG
GACAACTTGTTCGCCCCCCAAATCCGCGAACAGGCTCTTCTGGCTCTGGA
GGAGTCGGTGGCGGCCATTTTGGTGGTGGACGGGCAGGTGGGGGTCACCA
CCTTGGACGAGGAAGTCGCCAAATTTCTCCGGCTCCAGAAGAACAAGCCG
ATCTTCGTGGCCGTGAACAAGTGCGAGACGCCCAACATGGGGGAGGCCAT
GGCCAGCATGTTCTGGAAACTGGGTCTGGGCGAGCCGTTCCCGGTCAGCG
GACTGCACGGGACCGGGGTGGCGGAGATGTTGGAGAGGATGCTGCCGCAC
ATCTACGAGGTGGAGGAAGCGGAGCGGGAGGAGGCAATCAAGGTGGCGAT
CGTGGGGAGACCGAACGTGGGAAAGTCCTCGTTGCTGAACCGGCTCTATG
GGAAGGAGCGCGCGATCGTCTCAGACGTGGCAGGCACCACACGGGATGCG
GTAGACGCCTTGGTGGAGGTGAATGGGAAGAGCTACCGCTTCATCGACAC
GGCGGGGATCCGACGCCGGAAGAAAGTCGAGTACGGGAACGAGTTCCTGA
TGGTGAATCGGGCCTTGAAAGCCGTGCGGCGGGCGGACGTGGTCTTGCTC
GTGGTGGATGTGGTGGAGGGAATCAACGACCAGGACAAGATCCTGGCGCA
GCGCATCGCGGAAGACGGGCGGGCCTGCGTCATTGTCGCCAACAAGTGGG
ACGCAGTGGAAAAGGATGACAGGACATTCAACGAGGCGGTCGTGTACGTC
AAGGAAGAGCTGTTCGCGGTGAGTTGGGCGGACGTGCTCTTCACTTCGGC
CTTGACCGGCCAGCGATGCCACAAGATCTTCGACGCCATCGATAAAGCCT
CGGCTGCCCACCGTCAACGGGTGAAGACGAGCATTTTGAACGAGGTTTTG
GGGGAGGCGCTGGTCTGGCAACGCCCTCCCACCGTGAAAAGCTCTCAACA
GGGACGTGTCTATTACTGCAATCAAGTGGCGACGGAACCCCCCTCCGTGG
TGGTTTTCTGCAACAACCCCAAGCTTTTCCCTGACTCCTACAAGCGGTAT
CTCGACCGCAAATTCCGCGAGAGCTTGGACTTGACGGGCACGCCAATCCG
GTGGTATTTCAGGGGGAAAAAACTCCGACAACTTGCCAAGCAAGGGAGTC
CGGTGCCGTACGGGATGCCTGGAAGTTGAAGGAGGGAGGGAGTGAGTGAG
TAAGTGAGGGAGGGAGGGAGGTGGGTTGGTGGTGAAGGAGGACAGTGTGA
CGAAGGTTTGTGTAATATTTATGGGGAGATGAGATGAAGAAGTGAAAGCG
ACAAGTAAAAGTCAGAGCGAGCGCCCGATTTTTTTTCCTTCAGAATATAG
CAAGACGCATGGAAGACGCGCTCGTTCGAACTCAGGCTTGTAGTAGTCGC
ATTTCTCTCTACATTCCACTAGATAGACTCTCCGCGATCAATTCGACCGC
AACGACATGTCTTCCACC

protein sequence of rna2390

>rna2390-protein ID=rna2390-protein|Name=rna2390|organism=Nannochloropsis gaditana|type=polypeptide|length=433bp
MIRNLAPALRPRCTVIRPSGSDTSRCKGGRSCNRPLRRAWRSLSSFPPTS
PLVASITGKAERQHKWRSPRRACSHNLSSSPSSRSAASSTLKASEKIEAS
ASSRLSGGGGEAAAASPVDITFIDDNASQKPLPVQEVAFPWRPAPRRPAA
PRYASYGEWFTQILFQATLRGTFNKLLSKEMECLPRAVQERLFRYMRFAF
IQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVM
TYKDVMARFKANKREVRLELESIVPVAMHDYRMSMGPPRGSPQRAAMAKH
KFFGLTTFSDQPIDIDGPMTDTLAAYVRVMSRNPRIGFHIAVTFRCRELF
CVRNTDTGEVLQGEDGIREVDHVARFDVELDQKAQVTQDWRIVDIDGWTQ
AREGEVEEDEEEKGEPSGDRREGGGAQERGKDD

mRNA from alignment at CM002459.1:269984..271487-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2390 ID=rna2390|Name=rna2390|organism=Nannochloropsis gaditana|type=mRNA|length=1504bp|location=Sequence derived from alignment at CM002459.1:269984..271487- (Nannochloropsis gaditana)
ATGATCCGCAACCTAGCACCAGCCTTGCGGCCCAGATGTACTGTCATCCG
CCCGTCAGGTTCGGATACAAGCAGGTGCAAAGGCGGCCGCAGCTGCAACA
GGCCTCTTCGTCGGGCATGGCGCAGCCTGTCTTCTTTCCCTCCCACGTCT
CCGCTGGTGGCCTCCATCACGGGAAAAGCGGAGAGGCAACATAAATGGCG
CAGTCCACGACGAGCGTGTTCCCACAATTTATCGTCTTCTCCTTCCTCGC
GATCGGCGGCATCCTCTACTTTGAAGGCCTCTGAGAAGATAGAGGCCAGC
GCATCTTCACGCCTAAGTGGCGGGGGAGGGGAAGCTGCGGCAGCGTCTCC
GGTGGACATCACCTTCATAGACGACAATGCTTCTCAAAAACCATTGCCTG
TCCAGGAAGTTGCGTTCCCATGGCGCCCGGCGCCCCGTCGGCCTGCTGCA
CCACGCTATGCGTCTTACGGGGAGTGGTTCACCCAAATTTTGTTTCAGGC
CACCCTCCGCGGTACTTTCAACAAACTGCTATCCAAGGAAATGGAATGCC
TTCCTCGCGCCGTCCAAGAGCGTCTCTTCCGCTATATGCGCTTTGCCTTC
ATTCAGGGAGTGCGCGGGATTTTCGATGGGCAATGTAAAACGCCACGGCC
CACGTTGGAATTCTCTCGGGAAGACCCCACGCCTCCTTCCTCCACCTGGG
ATATGGGCTATCCACCCCTTTCCGCCATGATGGACGAGGCGCTGGTCATG
ACTTACAAAGACGTTATGGCGCGTTTCAAAGCGAACAAGCGGGAGGTGCG
TCTGGAGCTGGAGAGCATCGTCCCTGTTGCCATGCACGACTACCGCATGT
CGATGGGCCCTCCGCGAGGCTCCCCCCAACGCGCAGCCATGGCCAAGCAC
AAGTTCTTTGGTTTGACTACCTTCTCAGACCAGCCAATAGACATTGACGG
ACCCATGACGGACACCCTGGCCGCTTACGTGCGGGTCATGTCCCGGAACC
CTCGGATAGGATTTCACATCGCCGTTACATTCCGGTGTCGGGAGCTCTTT
TGTGTCCGTAACACCGATACAGGGGAGGTGTTGCAAGGGGAGGACGGGAT
CAGGGAAGTGGACCACGTGGCGCGGTTCGACGTGGAGTTGGACCAGAAAG
CGCAGGTGATGTTTAGGGAGAGAAAGGGGCGGCGGGGACGGGGGAGGGTT
ACGAGGTTTGTGTGTCAGTATGAGGCCAGTGTGTGCGCAAATCGTCACGG
ACGTGCCCATCATTTGATCTTTACTTGTAAGAGTGGGTGTGTATTTGATA
TCCCTTTCCCTGCCATCCAAGGTTCTGACGGTACCCGCTCTCTTCTCCTT
TCCCCAGGTGACGCAAGACTGGCGCATCGTGGACATCGACGGGTGGACGC
AGGCGAGGGAAGGGGAGGTTGAAGAGGACGAGGAGGAAAAAGGGGAGCCG
TCGGGAGATAGGAGGGAGGGTGGCGGAGCGCAGGAACGTGGGAAGGATGA
TTGA

Coding sequence (CDS) from alignment at CM002459.1:269984..271487-

>rna2390 ID=rna2390|Name=rna2390|organism=Nannochloropsis gaditana|type=CDS|length=2604bp|location=Sequence derived from alignment at CM002459.1:269984..271487- (Nannochloropsis gaditana)
GTGACGCAAGACTGGCGCATCGTGGACATCGACGGGTGGACGCAGGCGAG
GGAAGGGGAGGTTGAAGAGGACGAGGAGGAAAAAGGGGAGCCGTCGGGAG
ATAGGAGGGAGGGTGGCGGAGCGCAGGAACGTGGGAAGGATGATTGAATG
ATCCGCAACCTAGCACCAGCCTTGCGGCCCAGATGTACTGTCATCCGCCC
GTCAGGTTCGGATACAAGCAGGTGCAAAGGCGGCCGCAGCTGCAACAGGC
CTCTTCGTCGGGCATGGCGCAGCCTGTCTTCTTTCCCTCCCACGTCTCCG
CTGGTGGCCTCCATCACGGGAAAAGCGGAGAGGCAACATAAATGGCGCAG
TCCACGACGAGCGTGTTCCCACAATTTATCGTCTTCTCCTTCCTCGCGAT
CGGCGGCATCCTCTACTTTGAAGGCCTCTGAGAAGATAGAGGCCAGCGCA
TCTTCACGCCTAAGTGGCGGGGGAGGGGAAGCTGCGGCAGCGTCTCCGGT
GGACATCACCTTCATAGACGACAATGCTTCTCAAAAACCATTGCCTGTCC
AGGAAGTTGCGTTCCCATGGCGCCCGGCGCCCCGTCGGCCTGCTGCACCA
CGCTATGCGTCTTACGGGGAGTGGTTCACCCAAATTTTGTTTCAGGCCAC
CCTCCGCGGTACTTTCAACAAACTGCTATCCAAGGAAATGGAATGCCTTC
CTCGCGCCGTCCAAGAGCGTCTCTTCCGCTATATGCGCTTTGCCTTCATT
CAGGGAGTGCGCGGGATTTTCGATGGGCAATGTAAAACGCCACGGCCCAC
GTTGGAATTCTCTCGGGAAGACCCCACGCCTCCTTCCTCCACCTGGGATA
TGGGCTATCCACCCCTTTCCGCCATGATGGACGAGGCGCTGGTCATGACT
TACAAAGACGTTATGGCGCGTTTCAAAGCGAACAAGCGGGAGGTGCGTCT
GGAGCTGGAGAGCATCGTCCCTGTTGCCATGCACGACTACCGCATGTCGA
TGGGCCCTCCGCGAGGCTCCCCCCAACGCGCAGCCATGGCCAAGCACAAG
TTCTTTGGTTTGACTACCTTCTCAGACCAGCCAATAGACATTGACGGACC
CATGACGGACACCCTGGCCGCTTACGTGCGGGTCATGTCCCGGAACCCTC
GGATAGGATTTCACATCGCCGTTACATTCCGGTGTCGGGAGCTCTTTTGT
GTCCGTAACACCGATACAGGGGAGGTGTTGCAAGGGGAGGACGGGATCAG
GGAAGTGGACCACGTGGCGCGGTTCGACGTGGAGTTGGACCAGAAAGCGC
AGGTGACGCAAGACTGGCGCATCGTGGACATCGACGGGTGGACGCAGGCG
AGGGAAGGGGAGGTTGAAGAGGACGAGGAGGAAAAAGGGGAGCCGTCGGG
AGATAGGAGGGAGGGTGGCGGAGCGCAGGAACGTGGGAAGGATGATTGAA
TGATCCGCAACCTAGCACCAGCCTTGCGGCCCAGATGTACTGTCATCCGC
CCGTCAGGTTCGGATACAAGCAGGTGCAAAGGCGGCCGCAGCTGCAACAG
GCCTCTTCGTCGGGCATGGCGCAGCCTGTCTTCTTTCCCTCCCACGTCTC
CGCTGGTGGCCTCCATCACGGGAAAAGCGGAGAGGCAACATAAATGGCGC
AGTCCACGACGAGCGTGTTCCCACAATTTATCGTCTTCTCCTTCCTCGCG
ATCGGCGGCATCCTCTACTTTGAAGGCCTCTGAGAAGATAGAGGCCAGCG
CATCTTCACGCCTAAGTGGCGGGGGAGGGGAAGCTGCGGCAGCGTCTCCG
GTGGACATCACCTTCATAGACGACAATGCTTCTCAAAAACCATTGCCTGT
CCAGGAAGTTGCGTTCCCATGGCGCCCGGCGCCCCGTCGGCCTGCTGCAC
CACGCTATGCGTCTTACGGGGAGTGGTTCACCCAAATTTTGTTTCAGGCC
ACCCTCCGCGGTACTTTCAACAAACTGCTATCCAAGGAAATGGAATGCCT
TCCTCGCGCCGTCCAAGAGCGTCTCTTCCGCTATATGCGCTTTGCCTTCA
TTCAGGGAGTGCGCGGGATTTTCGATGGGCAATGTAAAACGCCACGGCCC
ACGTTGGAATTCTCTCGGGAAGACCCCACGCCTCCTTCCTCCACCTGGGA
TATGGGCTATCCACCCCTTTCCGCCATGATGGACGAGGCGCTGGTCATGA
CTTACAAAGACGTTATGGCGCGTTTCAAAGCGAACAAGCGGGAGGTGCGT
CTGGAGCTGGAGAGCATCGTCCCTGTTGCCATGCACGACTACCGCATGTC
GATGGGCCCTCCGCGAGGCTCCCCCCAACGCGCAGCCATGGCCAAGCACA
AGTTCTTTGGTTTGACTACCTTCTCAGACCAGCCAATAGACATTGACGGA
CCCATGACGGACACCCTGGCCGCTTACGTGCGGGTCATGTCCCGGAACCC
TCGGATAGGATTTCACATCGCCGTTACATTCCGGTGTCGGGAGCTCTTTT
GTGTCCGTAACACCGATACAGGGGAGGTGTTGCAAGGGGAGGACGGGATC
AGGGAAGTGGACCACGTGGCGCGGTTCGACGTGGAGTTGGACCAGAAAGC
GCAG

Synonyms

Publications