EWM28288.1, cds2382 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28288.1 vs. NCBI_GenBank
Match: gi|585110633|gb|EWM28288.1| (hypothetical protein Naga_100004g21 [Nannochloropsis gaditana]) HSP 1 Score: 892.108 bits (2304), Expect = 0.000e+0 Identity = 433/433 (100.00%), Postives = 433/433 (100.00%), Query Frame = 0
Query: 1 MIRNLAPALRPRCTVIRPSGSDTSRCKGGRSCNRPLRRAWRSLSSFPPTSPLVASITGKAERQHKWRSPRRACSHNLSSSPSSRSAASSTLKASEKIEASASSRLSGGGGEAAAASPVDITFIDDNASQKPLPVQEVAFPWRPAPRRPAAPRYASYGEWFTQILFQATLRGTFNKLLSKEMECLPRAVQERLFRYMRFAFIQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVMTYKDVMARFKANKREVRLELESIVPVAMHDYRMSMGPPRGSPQRAAMAKHKFFGLTTFSDQPIDIDGPMTDTLAAYVRVMSRNPRIGFHIAVTFRCRELFCVRNTDTGEVLQGEDGIREVDHVARFDVELDQKAQVTQDWRIVDIDGWTQAREGEVEEDEEEKGEPSGDRREGGGAQERGKDD 433
MIRNLAPALRPRCTVIRPSGSDTSRCKGGRSCNRPLRRAWRSLSSFPPTSPLVASITGKAERQHKWRSPRRACSHNLSSSPSSRSAASSTLKASEKIEASASSRLSGGGGEAAAASPVDITFIDDNASQKPLPVQEVAFPWRPAPRRPAAPRYASYGEWFTQILFQATLRGTFNKLLSKEMECLPRAVQERLFRYMRFAFIQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVMTYKDVMARFKANKREVRLELESIVPVAMHDYRMSMGPPRGSPQRAAMAKHKFFGLTTFSDQPIDIDGPMTDTLAAYVRVMSRNPRIGFHIAVTFRCRELFCVRNTDTGEVLQGEDGIREVDHVARFDVELDQKAQVTQDWRIVDIDGWTQAREGEVEEDEEEKGEPSGDRREGGGAQERGKDD
Sbjct: 1 MIRNLAPALRPRCTVIRPSGSDTSRCKGGRSCNRPLRRAWRSLSSFPPTSPLVASITGKAERQHKWRSPRRACSHNLSSSPSSRSAASSTLKASEKIEASASSRLSGGGGEAAAASPVDITFIDDNASQKPLPVQEVAFPWRPAPRRPAAPRYASYGEWFTQILFQATLRGTFNKLLSKEMECLPRAVQERLFRYMRFAFIQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVMTYKDVMARFKANKREVRLELESIVPVAMHDYRMSMGPPRGSPQRAAMAKHKFFGLTTFSDQPIDIDGPMTDTLAAYVRVMSRNPRIGFHIAVTFRCRELFCVRNTDTGEVLQGEDGIREVDHVARFDVELDQKAQVTQDWRIVDIDGWTQAREGEVEEDEEEKGEPSGDRREGGGAQERGKDD 433
BLAST of EWM28288.1 vs. NCBI_GenBank
Match: gi|585110566|gb|EWM28221.1| (hypothetical protein Naga_100004g22 [Nannochloropsis gaditana]) HSP 1 Score: 177.563 bits (449), Expect = 9.731e-48 Identity = 102/272 (37.50%), Postives = 157/272 (57.72%), Query Frame = 0
Query: 139 FPWRPAPRRPAAPRYASYGEWFTQI-LFQATLRGTFNKLLSKEMECLPRAVQERLFRYM----RFAFIQGVRGIFDGQCKTPRPTLEFSREDPTPPSSTWDMGYPPLSAMMDEALVMTYKDVMARFKANKREVRLELESIVPVAMHDYRMSMG--PPRGSPQRAAMAKHKFFGLTTFSDQPIDIDGPMTDTLAAYVRVMSRNPRIGFHIAVTFRCRELFCVRNTDTGEVLQGEDGIREVDHVARFDVELDQKAQVTQDWRIVDIDGWTQARE 403
FPW AP + F ++ + +TL ++L+K++ AV+ +FR + RFAFIQ VR IF+G CKTP PT + + D PSS W++GYPPLSAMM+ L Y+++++ F+A EVR ELESI +++ +R +G + P+R+++ L+ +P+ + + ++ R +AVTFRCRELF VRN+ TGEVLQGED ++EVDHVARF+V++D++ + +W +VDID + E
Sbjct: 127 FPWGSAPEAEVSAFGPQEKSMFQRLRYYLSTL--VVREMLAKKVAMHTNAVKRDVFRSLSGSTRFAFIQAVRAIFEGTCKTPEPTWKLTYHDARSPSSEWELGYPPLSAMMEPKLASLYENLVSSFRAKDLEVRYELESIRVLSLAGFRAIVGLREAQEKPERSSV---NIGALSLVFGKPVTVPSESERKEPVPISILYR-------MAVTFRCRELFTVRNSGTGEVLQGEDRMKEVDHVARFEVKVDEEKKAPFEWILVDIDDQLEGNE 386 The following BLAST results are available for this feature:
BLAST of EWM28288.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 2
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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